Copper in PDB 6nfq: Copc From Pseudomonas Fluorescens
Protein crystallography data
The structure of Copc From Pseudomonas Fluorescens, PDB code: 6nfq
was solved by
M.J.Maher,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.00 /
2.00
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
77.730,
111.319,
82.222,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22.8 /
26
|
Other elements in 6nfq:
The structure of Copc From Pseudomonas Fluorescens also contains other interesting chemical elements:
Copper Binding Sites:
The binding sites of Copper atom in the Copc From Pseudomonas Fluorescens
(pdb code 6nfq). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the
Copc From Pseudomonas Fluorescens, PDB code: 6nfq:
Jump to Copper binding site number:
1;
2;
3;
Copper binding site 1 out
of 3 in 6nfq
Go back to
Copper Binding Sites List in 6nfq
Copper binding site 1 out
of 3 in the Copc From Pseudomonas Fluorescens
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Copc From Pseudomonas Fluorescens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu201
b:19.4
occ:1.00
|
ND1
|
A:HIS109
|
1.8
|
55.5
|
1.0
|
N
|
A:HIS25
|
2.2
|
52.0
|
1.0
|
ND1
|
A:HIS25
|
2.3
|
52.8
|
1.0
|
OD2
|
A:ASP107
|
2.6
|
56.1
|
1.0
|
CG
|
A:HIS109
|
2.8
|
55.6
|
1.0
|
CE1
|
A:HIS109
|
2.8
|
59.1
|
1.0
|
CA
|
A:HIS25
|
3.0
|
46.6
|
1.0
|
CG
|
A:HIS25
|
3.1
|
50.3
|
1.0
|
CE1
|
A:HIS25
|
3.1
|
50.6
|
1.0
|
CB
|
A:HIS109
|
3.2
|
50.5
|
1.0
|
CG
|
A:ASP107
|
3.3
|
54.9
|
1.0
|
OD1
|
A:ASP107
|
3.4
|
62.0
|
1.0
|
CB
|
A:HIS25
|
3.4
|
47.0
|
1.0
|
NE2
|
A:HIS109
|
3.9
|
60.3
|
1.0
|
CD2
|
A:HIS109
|
3.9
|
58.5
|
1.0
|
NE2
|
A:HIS25
|
4.0
|
53.4
|
1.0
|
CD2
|
A:HIS25
|
4.0
|
50.4
|
1.0
|
C
|
A:HIS25
|
4.4
|
40.6
|
1.0
|
CA
|
A:HIS109
|
4.6
|
46.3
|
1.0
|
OE1
|
A:GLU51
|
4.7
|
57.4
|
1.0
|
OE2
|
A:GLU51
|
4.8
|
59.4
|
1.0
|
CB
|
A:ASP107
|
4.8
|
55.5
|
1.0
|
OG
|
A:SER105
|
4.9
|
56.8
|
1.0
|
O
|
A:HIS25
|
4.9
|
43.1
|
1.0
|
N
|
A:HIS109
|
5.0
|
45.5
|
1.0
|
|
Copper binding site 2 out
of 3 in 6nfq
Go back to
Copper Binding Sites List in 6nfq
Copper binding site 2 out
of 3 in the Copc From Pseudomonas Fluorescens
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Copc From Pseudomonas Fluorescens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu201
b:15.5
occ:1.00
|
ND1
|
B:HIS109
|
2.1
|
41.1
|
1.0
|
OD2
|
B:ASP107
|
2.1
|
49.5
|
1.0
|
N
|
B:HIS25
|
2.1
|
39.1
|
1.0
|
ND1
|
B:HIS25
|
2.3
|
44.6
|
1.0
|
CG
|
B:HIS109
|
2.9
|
36.3
|
1.0
|
CA
|
B:HIS25
|
3.0
|
39.9
|
1.0
|
CE1
|
B:HIS25
|
3.0
|
49.0
|
1.0
|
CB
|
B:HIS109
|
3.0
|
31.0
|
1.0
|
CG
|
B:HIS25
|
3.1
|
46.7
|
1.0
|
CE1
|
B:HIS109
|
3.2
|
38.3
|
1.0
|
CG
|
B:ASP107
|
3.3
|
47.0
|
1.0
|
CB
|
B:HIS25
|
3.5
|
46.3
|
1.0
|
NE2
|
B:HIS25
|
3.9
|
46.0
|
1.0
|
CD2
|
B:HIS25
|
3.9
|
46.3
|
1.0
|
CB
|
B:ASP107
|
4.0
|
44.2
|
1.0
|
CD2
|
B:HIS109
|
4.1
|
37.6
|
1.0
|
NE2
|
B:HIS109
|
4.2
|
38.9
|
1.0
|
OE1
|
B:GLU51
|
4.2
|
38.8
|
1.0
|
OD1
|
B:ASP107
|
4.2
|
68.4
|
1.0
|
C
|
B:HIS25
|
4.4
|
40.5
|
1.0
|
CA
|
B:HIS109
|
4.5
|
31.9
|
1.0
|
N
|
B:HIS109
|
4.9
|
28.9
|
1.0
|
O
|
B:HIS25
|
4.9
|
38.3
|
1.0
|
|
Copper binding site 3 out
of 3 in 6nfq
Go back to
Copper Binding Sites List in 6nfq
Copper binding site 3 out
of 3 in the Copc From Pseudomonas Fluorescens
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Copc From Pseudomonas Fluorescens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu201
b:15.2
occ:1.00
|
ND1
|
C:HIS25
|
1.9
|
43.2
|
1.0
|
N
|
C:HIS25
|
2.2
|
43.6
|
1.0
|
ND1
|
C:HIS109
|
2.3
|
45.5
|
1.0
|
OD2
|
C:ASP107
|
2.4
|
42.8
|
1.0
|
CE1
|
C:HIS25
|
2.7
|
51.2
|
1.0
|
CG
|
C:HIS109
|
2.9
|
42.0
|
1.0
|
CG
|
C:HIS25
|
3.0
|
43.9
|
1.0
|
CB
|
C:HIS109
|
3.1
|
38.8
|
1.0
|
CA
|
C:HIS25
|
3.1
|
37.6
|
1.0
|
CE1
|
C:HIS109
|
3.3
|
49.5
|
1.0
|
CG
|
C:ASP107
|
3.3
|
46.8
|
1.0
|
CB
|
C:HIS25
|
3.4
|
37.2
|
1.0
|
OD1
|
C:ASP107
|
3.5
|
40.7
|
1.0
|
NE2
|
C:HIS25
|
3.9
|
52.0
|
1.0
|
CD2
|
C:HIS25
|
4.0
|
43.3
|
1.0
|
CD2
|
C:HIS109
|
4.0
|
46.2
|
1.0
|
NE2
|
C:HIS109
|
4.2
|
49.3
|
1.0
|
C
|
C:HIS25
|
4.5
|
36.5
|
1.0
|
CA
|
C:HIS109
|
4.5
|
39.6
|
1.0
|
OE2
|
C:GLU51
|
4.5
|
51.7
|
1.0
|
CB
|
C:ASP107
|
4.7
|
42.2
|
1.0
|
N
|
C:HIS109
|
4.9
|
41.1
|
1.0
|
|
Reference:
S.R.Udagedara,
C.J.K.Wijekoon,
Z.Xiao,
A.G.Wedd,
M.J.Maher.
The Crystal Structure of the Copc Protein From Pseudomonas Fluorescens Reveals Amended Classifications For the Copc Protein Family. J. Inorg. Biochem. V. 195 194 2019.
ISSN: ISSN 1873-3344
PubMed: 30981030
DOI: 10.1016/J.JINORGBIO.2019.03.007
Page generated: Mon Jul 14 06:34:15 2025
|