Copper in PDB 6rn5: Ppta From Streptomyces Chartreusis

The structure of Ppta From Streptomyces Chartreusis, PDB code: 6rn5 was solved by S.Werten, N.Rustmeier, W.Hinrichs, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.20 / 2.04
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	49.303, 132.233, 116.398, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 23.7

The structure of Ppta From Streptomyces Chartreusis also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Copper atom in the Ppta From Streptomyces Chartreusis (pdb code 6rn5). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Ppta From Streptomyces Chartreusis, PDB code: 6rn5:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Ppta From Streptomyces Chartreusis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Ppta From Streptomyces Chartreusis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu401 b:31.4 occ:1.00 NE2 A:HIS269 1.9 35.1 1.0 NE2 A:HIS346 2.0 29.4 1.0 CL A:CL403 2.1 33.8 1.0 NE2 A:HIS260 2.2 38.1 1.0 CD2 A:HIS269 2.8 36.5 1.0 CE1 A:HIS346 2.9 33.6 1.0 CE1 A:HIS269 3.0 40.1 1.0 CD2 A:HIS260 3.1 38.4 1.0 CD2 A:HIS346 3.1 28.4 1.0 CE1 A:HIS260 3.2 37.8 1.0 CG A:HIS269 4.0 35.0 1.0 ND1 A:HIS269 4.1 36.5 1.0 ND1 A:HIS346 4.1 31.6 1.0 O A:HOH529 4.2 28.3 1.0 CG A:HIS346 4.2 30.5 1.0 CG A:HIS260 4.3 38.8 1.0 ND1 A:HIS260 4.3 36.2 1.0 CD A:ARG350 4.4 31.7 1.0 O A:ALA257 4.5 39.9 1.0 CG A:ARG350 4.6 27.8 1.0 CB A:PRO268 4.7 53.5 1.0 CB A:ALA326 4.9 26.8 1.0

Copper binding site 2 out of 2 in the Ppta From Streptomyces Chartreusis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Ppta From Streptomyces Chartreusis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu402 b:64.0 occ:0.50 NE2 A:HIS351 2.5 48.5 1.0 O A:HOH612 2.6 33.2 1.0 CD2 A:HIS351 3.0 49.8 1.0 CE1 A:HIS351 3.7 53.9 1.0 CB A:ALA347 3.9 27.0 1.0 O A:HOH585 4.1 47.7 1.0 CG A:HIS351 4.3 44.2 1.0 C A:ALA347 4.6 30.7 1.0 ND1 A:HIS351 4.6 51.3 1.0 N A:ASP348 4.7 27.2 1.0 O A:ALA347 4.8 28.2 1.0 CA A:ALA347 4.9 28.0 1.0

S.Werten, N.H.Rustmeier, M.Gemmer, M.J.Virolle, W.Hinrichs. Structural and Biochemical Analysis of A Phosin From Streptomyces Chartreusis Reveals A Combined Polyphosphate- and Metal-Binding Fold. Febs Lett. V. 593 2019 2019.
ISSN: ISSN 0014-5793
PubMed: 31183865
DOI: 10.1002/1873-3468.13476