Copper in PDB 9bpb: Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae
Enzymatic activity of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae
All present enzymatic activity of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae:
7.1.1.8;
7.1.1.9;
Other elements in 9bpb:
The structure of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae also contains other interesting chemical elements:
Copper Binding Sites:
The binding sites of Copper atom in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae
(pdb code 9bpb). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the
Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae, PDB code: 9bpb:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
Copper binding site 1 out
of 6 in 9bpb
Go back to
Copper Binding Sites List in 9bpb
Copper binding site 1 out
of 6 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Cu602
b:20.0
occ:1.00
|
ND1
|
a:HIS241
|
2.4
|
30.0
|
1.0
|
NE2
|
a:HIS291
|
2.6
|
29.3
|
1.0
|
NE2
|
a:HIS290
|
2.9
|
31.1
|
1.0
|
CB
|
a:HIS241
|
3.0
|
30.8
|
1.0
|
CG
|
a:HIS241
|
3.0
|
34.6
|
1.0
|
CA
|
a:HIS241
|
3.3
|
39.1
|
1.0
|
CD2
|
a:HIS291
|
3.3
|
26.2
|
1.0
|
CE1
|
a:HIS241
|
3.5
|
32.7
|
1.0
|
CE1
|
a:HIS291
|
3.6
|
36.4
|
1.0
|
CE1
|
a:HIS290
|
3.7
|
32.1
|
1.0
|
CD2
|
a:HIS290
|
3.9
|
36.3
|
1.0
|
CG2
|
a:VAL244
|
4.0
|
21.1
|
1.0
|
CD2
|
a:HIS241
|
4.2
|
33.6
|
1.0
|
O
|
a:HIS241
|
4.2
|
39.3
|
1.0
|
C
|
a:HIS241
|
4.3
|
37.3
|
1.0
|
CG1
|
a:VAL244
|
4.3
|
29.7
|
1.0
|
N
|
a:HIS241
|
4.4
|
26.7
|
1.0
|
NE2
|
a:HIS241
|
4.4
|
39.6
|
1.0
|
CG
|
a:HIS291
|
4.5
|
28.3
|
1.0
|
ND1
|
a:HIS291
|
4.6
|
35.8
|
1.0
|
FE
|
a:HEA603
|
4.7
|
20.0
|
1.0
|
CB
|
a:VAL244
|
4.8
|
23.8
|
1.0
|
O
|
a:VAL287
|
4.9
|
55.4
|
1.0
|
ND1
|
a:HIS290
|
4.9
|
39.7
|
1.0
|
ND
|
a:HEA603
|
4.9
|
20.0
|
1.0
|
C1A
|
a:HEA603
|
4.9
|
20.0
|
1.0
|
|
Copper binding site 2 out
of 6 in 9bpb
Go back to
Copper Binding Sites List in 9bpb
Copper binding site 2 out
of 6 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Cu303
b:20.0
occ:1.00
|
CU1
|
b:CUA303
|
0.0
|
20.0
|
1.0
|
CU2
|
b:CUA303
|
1.7
|
20.0
|
1.0
|
SG
|
b:CYS225
|
2.1
|
32.7
|
1.0
|
SG
|
b:CYS221
|
2.5
|
37.1
|
1.0
|
O
|
b:GLU223
|
2.5
|
39.6
|
1.0
|
ND1
|
b:HIS229
|
2.5
|
32.3
|
1.0
|
CB
|
b:CYS225
|
3.1
|
33.7
|
1.0
|
CE1
|
b:HIS229
|
3.2
|
34.1
|
1.0
|
SD
|
b:MET232
|
3.7
|
51.5
|
1.0
|
CG
|
b:HIS229
|
3.7
|
29.7
|
1.0
|
N
|
b:CYS225
|
3.8
|
32.2
|
1.0
|
C
|
b:GLU223
|
3.8
|
31.3
|
1.0
|
CB
|
b:CYS221
|
3.9
|
37.5
|
1.0
|
CB
|
b:HIS186
|
4.0
|
30.0
|
1.0
|
CA
|
b:CYS225
|
4.1
|
27.0
|
1.0
|
CA
|
b:HIS229
|
4.1
|
36.9
|
1.0
|
CB
|
b:HIS229
|
4.2
|
25.7
|
1.0
|
C
|
b:LEU224
|
4.3
|
32.4
|
1.0
|
CE
|
b:MET232
|
4.3
|
38.0
|
1.0
|
NE2
|
b:HIS229
|
4.4
|
33.8
|
1.0
|
CA
|
b:LEU224
|
4.5
|
21.9
|
1.0
|
O
|
b:HIS229
|
4.6
|
39.3
|
1.0
|
CA
|
b:HIS186
|
4.6
|
37.5
|
1.0
|
N
|
b:LEU224
|
4.6
|
24.2
|
1.0
|
N
|
b:GLU223
|
4.7
|
36.9
|
1.0
|
CD2
|
b:HIS229
|
4.7
|
37.0
|
1.0
|
C
|
b:CYS221
|
4.7
|
34.7
|
1.0
|
CA
|
b:GLU223
|
4.8
|
33.4
|
1.0
|
ND1
|
b:HIS186
|
4.8
|
30.0
|
1.0
|
O
|
b:CYS221
|
4.8
|
38.9
|
1.0
|
C
|
b:HIS229
|
4.9
|
43.9
|
1.0
|
CG
|
b:HIS186
|
4.9
|
30.0
|
1.0
|
C
|
b:SER222
|
4.9
|
47.4
|
1.0
|
CA
|
b:CYS221
|
4.9
|
31.9
|
1.0
|
N
|
b:SER222
|
4.9
|
36.4
|
1.0
|
C
|
b:CYS225
|
5.0
|
31.3
|
1.0
|
|
Copper binding site 3 out
of 6 in 9bpb
Go back to
Copper Binding Sites List in 9bpb
Copper binding site 3 out
of 6 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Cu303
b:20.0
occ:1.00
|
CU2
|
b:CUA303
|
0.0
|
20.0
|
1.0
|
CU1
|
b:CUA303
|
1.7
|
20.0
|
1.0
|
SG
|
b:CYS225
|
2.0
|
32.7
|
1.0
|
SD
|
b:MET232
|
2.5
|
51.5
|
1.0
|
SG
|
b:CYS221
|
2.7
|
37.1
|
1.0
|
CE
|
b:MET232
|
2.8
|
38.0
|
1.0
|
CB
|
b:CYS225
|
3.1
|
33.7
|
1.0
|
CB
|
b:HIS186
|
3.2
|
30.0
|
1.0
|
ND1
|
b:HIS186
|
3.5
|
30.0
|
1.0
|
CG
|
b:HIS186
|
3.8
|
30.0
|
1.0
|
O
|
b:GLU223
|
4.0
|
39.6
|
1.0
|
CB
|
b:CYS221
|
4.0
|
37.5
|
1.0
|
ND1
|
b:HIS229
|
4.1
|
32.3
|
1.0
|
CG
|
b:MET232
|
4.2
|
38.3
|
1.0
|
CA
|
b:HIS186
|
4.3
|
37.5
|
1.0
|
CA
|
b:CYS225
|
4.5
|
27.0
|
1.0
|
N
|
b:CYS225
|
4.7
|
32.2
|
1.0
|
CB
|
b:MET232
|
4.7
|
36.0
|
1.0
|
CE1
|
b:HIS186
|
4.7
|
30.0
|
1.0
|
CA
|
b:HIS229
|
4.8
|
36.9
|
1.0
|
N
|
b:TRP124
|
4.8
|
56.9
|
1.0
|
CE1
|
b:HIS229
|
4.9
|
34.1
|
1.0
|
|
Copper binding site 4 out
of 6 in 9bpb
Go back to
Copper Binding Sites List in 9bpb
Copper binding site 4 out
of 6 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
m:Cu602
b:20.0
occ:1.00
|
ND1
|
m:HIS241
|
2.4
|
30.0
|
1.0
|
NE2
|
m:HIS291
|
2.6
|
29.3
|
1.0
|
NE2
|
m:HIS290
|
2.9
|
31.1
|
1.0
|
CB
|
m:HIS241
|
3.0
|
30.8
|
1.0
|
CG
|
m:HIS241
|
3.0
|
34.6
|
1.0
|
CA
|
m:HIS241
|
3.3
|
39.1
|
1.0
|
CD2
|
m:HIS291
|
3.3
|
26.2
|
1.0
|
CE1
|
m:HIS241
|
3.5
|
32.7
|
1.0
|
CE1
|
m:HIS291
|
3.6
|
36.4
|
1.0
|
CE1
|
m:HIS290
|
3.7
|
32.1
|
1.0
|
CD2
|
m:HIS290
|
3.9
|
36.3
|
1.0
|
CG2
|
m:VAL244
|
4.0
|
21.1
|
1.0
|
CD2
|
m:HIS241
|
4.2
|
33.6
|
1.0
|
O
|
m:HIS241
|
4.2
|
39.3
|
1.0
|
C
|
m:HIS241
|
4.3
|
37.3
|
1.0
|
CG1
|
m:VAL244
|
4.3
|
29.7
|
1.0
|
N
|
m:HIS241
|
4.4
|
26.7
|
1.0
|
NE2
|
m:HIS241
|
4.4
|
39.6
|
1.0
|
CG
|
m:HIS291
|
4.5
|
28.3
|
1.0
|
ND1
|
m:HIS291
|
4.6
|
35.8
|
1.0
|
FE
|
m:HEA603
|
4.7
|
20.0
|
1.0
|
CB
|
m:VAL244
|
4.8
|
23.8
|
1.0
|
O
|
m:VAL287
|
4.9
|
55.4
|
1.0
|
ND1
|
m:HIS290
|
4.9
|
39.7
|
1.0
|
ND
|
m:HEA603
|
4.9
|
20.0
|
1.0
|
C1A
|
m:HEA603
|
4.9
|
20.0
|
1.0
|
|
Copper binding site 5 out
of 6 in 9bpb
Go back to
Copper Binding Sites List in 9bpb
Copper binding site 5 out
of 6 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
n:Cu303
b:20.0
occ:1.00
|
CU1
|
n:CUA303
|
0.0
|
20.0
|
1.0
|
CU2
|
n:CUA303
|
1.7
|
20.0
|
1.0
|
SG
|
n:CYS225
|
2.1
|
32.7
|
1.0
|
SG
|
n:CYS221
|
2.5
|
37.1
|
1.0
|
O
|
n:GLU223
|
2.5
|
39.6
|
1.0
|
ND1
|
n:HIS229
|
2.5
|
32.3
|
1.0
|
CB
|
n:CYS225
|
3.1
|
33.7
|
1.0
|
CE1
|
n:HIS229
|
3.2
|
34.1
|
1.0
|
SD
|
n:MET232
|
3.7
|
51.5
|
1.0
|
CG
|
n:HIS229
|
3.7
|
29.7
|
1.0
|
N
|
n:CYS225
|
3.8
|
32.2
|
1.0
|
C
|
n:GLU223
|
3.8
|
31.3
|
1.0
|
CB
|
n:CYS221
|
3.9
|
37.5
|
1.0
|
CB
|
n:HIS186
|
4.0
|
30.0
|
1.0
|
CA
|
n:CYS225
|
4.1
|
27.0
|
1.0
|
CA
|
n:HIS229
|
4.1
|
36.9
|
1.0
|
CB
|
n:HIS229
|
4.2
|
25.7
|
1.0
|
C
|
n:LEU224
|
4.3
|
32.4
|
1.0
|
CE
|
n:MET232
|
4.3
|
38.0
|
1.0
|
NE2
|
n:HIS229
|
4.4
|
33.8
|
1.0
|
CA
|
n:LEU224
|
4.5
|
21.9
|
1.0
|
O
|
n:HIS229
|
4.6
|
39.3
|
1.0
|
CA
|
n:HIS186
|
4.6
|
37.5
|
1.0
|
N
|
n:LEU224
|
4.6
|
24.2
|
1.0
|
N
|
n:GLU223
|
4.7
|
36.9
|
1.0
|
CD2
|
n:HIS229
|
4.7
|
37.0
|
1.0
|
C
|
n:CYS221
|
4.7
|
34.7
|
1.0
|
CA
|
n:GLU223
|
4.8
|
33.4
|
1.0
|
ND1
|
n:HIS186
|
4.8
|
30.0
|
1.0
|
O
|
n:CYS221
|
4.8
|
38.9
|
1.0
|
C
|
n:HIS229
|
4.9
|
43.9
|
1.0
|
CG
|
n:HIS186
|
4.9
|
30.0
|
1.0
|
C
|
n:SER222
|
4.9
|
47.4
|
1.0
|
CA
|
n:CYS221
|
4.9
|
31.9
|
1.0
|
N
|
n:SER222
|
4.9
|
36.4
|
1.0
|
C
|
n:CYS225
|
5.0
|
31.3
|
1.0
|
|
Copper binding site 6 out
of 6 in 9bpb
Go back to
Copper Binding Sites List in 9bpb
Copper binding site 6 out
of 6 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
n:Cu303
b:20.0
occ:1.00
|
CU2
|
n:CUA303
|
0.0
|
20.0
|
1.0
|
CU1
|
n:CUA303
|
1.7
|
20.0
|
1.0
|
SG
|
n:CYS225
|
2.0
|
32.7
|
1.0
|
SD
|
n:MET232
|
2.5
|
51.5
|
1.0
|
SG
|
n:CYS221
|
2.7
|
37.1
|
1.0
|
CE
|
n:MET232
|
2.8
|
38.0
|
1.0
|
CB
|
n:CYS225
|
3.1
|
33.7
|
1.0
|
CB
|
n:HIS186
|
3.2
|
30.0
|
1.0
|
ND1
|
n:HIS186
|
3.5
|
30.0
|
1.0
|
CG
|
n:HIS186
|
3.8
|
30.0
|
1.0
|
O
|
n:GLU223
|
4.0
|
39.6
|
1.0
|
CB
|
n:CYS221
|
4.0
|
37.5
|
1.0
|
ND1
|
n:HIS229
|
4.1
|
32.3
|
1.0
|
CG
|
n:MET232
|
4.2
|
38.3
|
1.0
|
CA
|
n:HIS186
|
4.3
|
37.5
|
1.0
|
CA
|
n:CYS225
|
4.5
|
27.0
|
1.0
|
N
|
n:CYS225
|
4.7
|
32.2
|
1.0
|
CB
|
n:MET232
|
4.7
|
36.0
|
1.0
|
CE1
|
n:HIS186
|
4.7
|
30.0
|
1.0
|
CA
|
n:HIS229
|
4.8
|
36.9
|
1.0
|
N
|
n:TRP124
|
4.8
|
56.9
|
1.0
|
CE1
|
n:HIS229
|
4.9
|
34.1
|
1.0
|
|
Reference:
M.H.Eldeeb,
Z.Cosner,
J.Mays,
A.Carlstrom,
G.Rodriguez,
J.Berndtsson,
M.Ott,
F.Fontanesi.
Differential Substrate Utilization By Yeast Respiratory Supercomplexes To Be Published.
Page generated: Mon Jul 14 09:45:45 2025
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