Copper in PDB 6ifp: X-Ray Crystal Structure of Pseudoazurin MET16ILE Variant

The structure of X-Ray Crystal Structure of Pseudoazurin MET16ILE Variant, PDB code: 6ifp was solved by C.Sakai, T.Yamaguchi, T.Kohzuma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	33.956, 60.183, 47.988, 90.00, 96.16, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Copper atom in the X-Ray Crystal Structure of Pseudoazurin MET16ILE Variant (pdb code 6ifp). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the X-Ray Crystal Structure of Pseudoazurin MET16ILE Variant, PDB code: 6ifp:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the X-Ray Crystal Structure of Pseudoazurin MET16ILE Variant


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of X-Ray Crystal Structure of Pseudoazurin MET16ILE Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu201 b:9.6 occ:1.00 ND1 A:HIS81 2.0 11.4 1.0 ND1 A:HIS40 2.0 8.5 1.0 SG A:CYS78 2.2 9.0 1.0 SD A:MET86 2.5 9.1 1.0 HB2 A:HIS81 2.8 12.9 1.0 CE1 A:HIS40 2.9 10.0 1.0 CE1 A:HIS81 3.0 14.8 1.0 CG A:HIS81 3.0 13.3 1.0 CG A:HIS40 3.0 7.7 1.0 HA A:HIS40 3.0 9.7 1.0 HE1 A:HIS40 3.1 12.1 1.0 HE1 A:HIS81 3.1 17.7 1.0 HB3 A:HIS40 3.2 9.3 1.0 CB A:CYS78 3.2 7.6 1.0 HB3 A:CYS78 3.2 9.1 1.0 HE1 A:MET86 3.3 16.8 1.0 HB2 A:CYS78 3.3 9.1 1.0 CB A:HIS81 3.4 10.7 1.0 CE A:MET86 3.4 11.2 1.0 CB A:HIS40 3.4 7.7 1.0 HE2 A:MET86 3.5 16.8 1.0 CA A:HIS40 3.7 8.1 1.0 HG2 A:PRO80 3.8 20.1 1.0 HB3 A:HIS81 3.9 12.9 1.0 CG A:MET86 3.9 8.1 1.0 H A:ASN41 4.0 10.1 1.0 HB3 A:MET86 4.0 8.7 1.0 HG2 A:MET86 4.1 9.7 1.0 NE2 A:HIS81 4.1 19.2 1.0 NE2 A:HIS40 4.1 9.6 1.0 CD2 A:HIS40 4.1 9.1 1.0 CD2 A:HIS81 4.1 19.1 1.0 O A:GLY39 4.2 12.1 1.0 H A:HIS81 4.2 13.0 1.0 HE3 A:MET86 4.3 16.8 1.0 HB2 A:MET86 4.3 8.7 1.0 CB A:MET86 4.3 7.2 1.0 HB2 A:HIS40 4.4 9.3 1.0 HB A:ILE16 4.4 10.3 1.0 N A:HIS81 4.5 10.8 1.0 N A:HIS40 4.5 8.6 1.0 CA A:HIS81 4.6 10.1 1.0 HD2 A:PRO80 4.6 12.6 1.0 CA A:CYS78 4.6 7.5 1.0 HG21 A:ILE16 4.6 15.7 1.0 C A:GLY39 4.6 9.8 1.0 N A:ASN41 4.7 8.4 1.0 CG A:PRO80 4.7 16.7 1.0 HG3 A:MET86 4.7 9.7 1.0 C A:HIS40 4.8 8.0 1.0 HB2 A:PRO80 4.9 23.8 1.0 HG23 A:ILE16 4.9 15.7 1.0 HA A:CYS78 4.9 9.0 1.0 HD2 A:HIS40 5.0 10.9 1.0

Copper binding site 2 out of 2 in the X-Ray Crystal Structure of Pseudoazurin MET16ILE Variant


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of X-Ray Crystal Structure of Pseudoazurin MET16ILE Variant within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu201 b:9.4 occ:1.00 ND1 C:HIS40 2.0 8.5 1.0 ND1 C:HIS81 2.0 10.7 1.0 SG C:CYS78 2.2 9.4 1.0 SD C:MET86 2.5 9.1 1.0 HB2 C:HIS81 2.8 13.0 1.0 HA C:HIS40 2.9 9.6 1.0 CE1 C:HIS81 3.0 14.3 1.0 CE1 C:HIS40 3.0 9.2 1.0 CG C:HIS40 3.0 7.9 1.0 CG C:HIS81 3.0 11.8 1.0 CB C:CYS78 3.1 8.6 1.0 HE1 C:HIS40 3.1 11.0 1.0 HE1 C:HIS81 3.1 17.2 1.0 HB3 C:HIS40 3.2 9.3 1.0 HB3 C:CYS78 3.2 10.3 1.0 HB2 C:CYS78 3.2 10.3 1.0 HE1 C:MET86 3.3 15.0 1.0 CB C:HIS81 3.4 10.8 1.0 CE C:MET86 3.4 10.0 1.0 CB C:HIS40 3.4 7.8 1.0 HG23 C:ILE16 3.5 31.4 0.5 HE2 C:MET86 3.5 15.0 1.0 HG22 C:ILE16 3.6 17.0 0.5 CA C:HIS40 3.6 8.0 1.0 HG2 C:PRO80 3.8 13.7 1.0 HB3 C:HIS81 3.8 13.0 1.0 CG C:MET86 3.9 8.1 1.0 H C:ASN41 4.0 10.2 1.0 HG23 C:ILE16 4.0 17.0 0.5 HB3 C:MET86 4.0 9.4 1.0 HG2 C:MET86 4.1 9.7 1.0 NE2 C:HIS81 4.1 18.8 1.0 NE2 C:HIS40 4.1 9.0 1.0 O C:GLY39 4.1 10.9 1.0 HG22 C:ILE16 4.1 31.4 0.5 CD2 C:HIS40 4.1 8.1 1.0 CD2 C:HIS81 4.1 18.6 1.0 CG2 C:ILE16 4.2 20.9 0.5 CG2 C:ILE16 4.2 11.3 0.5 HB2 C:MET86 4.3 9.4 1.0 HE3 C:MET86 4.3 15.0 1.0 CB C:MET86 4.3 7.8 1.0 HG21 C:ILE16 4.3 17.0 0.5 HB2 C:HIS40 4.4 9.3 1.0 HG21 C:ILE16 4.4 31.4 0.5 H C:HIS81 4.4 12.6 1.0 N C:HIS40 4.5 8.5 1.0 CA C:CYS78 4.5 8.3 1.0 C C:GLY39 4.6 8.4 1.0 N C:ASN41 4.6 8.5 1.0 CA C:HIS81 4.6 9.7 1.0 HD2 C:PRO80 4.7 12.7 1.0 HG3 C:MET86 4.7 9.7 1.0 N C:HIS81 4.7 10.5 1.0 CG C:PRO80 4.7 11.4 1.0 C C:HIS40 4.7 8.1 1.0 HA C:CYS78 4.9 10.0 1.0 HD2 C:HIS40 5.0 9.8 1.0

C.Sakai, T.Yamaguchi, T.Kohzuma. X-Ray Crystal Structure of Pseudoazurin MET16LEU Variant To Be Published.