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Copper in PDB 9kwv: Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite
Enzymatic activity of Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite
All present enzymatic activity of Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite:
1.7.2.1;
1.7.2.1;
Protein crystallography data
The structure of Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite, PDB code: 9kwv
was solved by
Y.Fukuda,
M.Lintuluoto,
Y.Hirano,
K.Kusaka,
T.Inoue,
T.Tamada,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 28.84 / 0.99 |
| Space group | H 3 |
| Cell size a, b, c (Å), α, β, γ (°) | 115.371, 115.371, 84.336, 90, 90, 120 |
| R / Rfree (%) | 10.7 / 11.7 |
Other elements in 9kwv:
The structure of Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite also contains other interesting chemical elements:
| Chlorine | (Cl) | 1 atom |
Copper Binding Sites:
The binding sites of Copper atom in the Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite
(pdb code 9kwv). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite, PDB code: 9kwv:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Copper where determined in the Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite, PDB code: 9kwv:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;
Copper binding site 1 out of 6 in 9kwv
Go back to
Copper Binding Sites List in 9kwv
Copper binding site 1 out
of 6 in the Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite within 5.0Å range:
|
Copper binding site 2 out of 6 in 9kwv
Go back to
Copper Binding Sites List in 9kwv
Copper binding site 2 out
of 6 in the Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite within 5.0Å range:
|
Copper binding site 3 out of 6 in 9kwv
Go back to
Copper Binding Sites List in 9kwv
Copper binding site 3 out
of 6 in the Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite within 5.0Å range:
|
Copper binding site 4 out of 6 in 9kwv
Go back to
Copper Binding Sites List in 9kwv
Copper binding site 4 out
of 6 in the Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite within 5.0Å range:
|
Copper binding site 5 out of 6 in 9kwv
Go back to
Copper Binding Sites List in 9kwv
Copper binding site 5 out
of 6 in the Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite within 5.0Å range:
|
Copper binding site 6 out of 6 in 9kwv
Go back to
Copper Binding Sites List in 9kwv
Copper binding site 6 out
of 6 in the Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Structure of A D98N/C135A/G136A Mutant Copper-Containing Nitrite Reductase in Complex with Nitrite within 5.0Å range:
|
Reference:
Y.Fukuda,
M.Lintuluoto,
Y.Hirano,
K.Kusaka,
T.Inoue,
T.Tamada.
Structural Basis of Cuproenzyme Nitrite Reduction at the Level of A Single Hydrogen Atom. J.Biol.Chem. 10290 2025.
ISSN: ESSN 1083-351X
PubMed: 40436316
DOI: 10.1016/J.JBC.2025.110290
Page generated: Mon Jul 14 10:06:26 2025
ISSN: ESSN 1083-351X
PubMed: 40436316
DOI: 10.1016/J.JBC.2025.110290
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