Copper in PDB 9ggo: Strand-Swapped Dimer of Engineered Copper Binding SH3-Like Protein

The structure of Strand-Swapped Dimer of Engineered Copper Binding SH3-Like Protein, PDB code: 9ggo was solved by M.Schwan, J.Kopp, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.61 / 2.00
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	56.509, 56.509, 58.778, 90, 90, 120
R / Rfree (%)	20.3 / 22.7

The binding sites of Copper atom in the Strand-Swapped Dimer of Engineered Copper Binding SH3-Like Protein (pdb code 9ggo). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Strand-Swapped Dimer of Engineered Copper Binding SH3-Like Protein, PDB code: 9ggo:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Strand-Swapped Dimer of Engineered Copper Binding SH3-Like Protein


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Strand-Swapped Dimer of Engineered Copper Binding SH3-Like Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu101 b:75.4 occ:1.00 NE2 A:HIS10 2.1 49.0 1.0 NE2 A:HIS13 2.1 52.5 1.0 CE1 A:HIS10 2.9 44.3 1.0 CD2 A:HIS13 3.1 49.4 1.0 CE1 A:HIS13 3.2 56.9 1.0 CD2 A:HIS10 3.2 34.7 1.0 CU A:CU102 3.6 160.3 1.0 CD2 A:HIS50 3.8 48.3 1.0 O A:HOH211 3.9 54.2 1.0 NE2 A:HIS50 4.1 56.3 1.0 ND1 A:HIS10 4.1 47.4 1.0 O A:HOH205 4.2 40.9 1.0 CG A:HIS10 4.2 36.4 1.0 ND1 A:HIS13 4.3 47.0 1.0 CG A:HIS13 4.3 45.2 1.0 O A:THR11 4.5 45.1 1.0

Copper binding site 2 out of 2 in the Strand-Swapped Dimer of Engineered Copper Binding SH3-Like Protein


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Strand-Swapped Dimer of Engineered Copper Binding SH3-Like Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu102 b:160.3 occ:1.00 NE2 A:HIS50 2.1 56.3 1.0 OE1 A:GLU15 2.5 106.5 1.0 CD A:GLU15 2.9 82.7 1.0 CE1 A:HIS50 3.0 49.4 1.0 OE2 A:GLU15 3.1 114.2 1.0 CD2 A:HIS50 3.2 48.3 1.0 CU A:CU101 3.6 75.4 1.0 CE1 A:HIS13 3.7 56.9 1.0 NE2 A:HIS13 4.0 52.5 1.0 CG A:GLU15 4.0 73.2 1.0 ND1 A:HIS50 4.1 46.8 1.0 CG A:HIS50 4.2 42.5 1.0 CD2 A:LEU36 4.8 47.2 1.0 ND1 A:HIS13 4.9 47.0 1.0

F.Haege, M.Schwan, M.R.Conde Gonzalec, J.Huber, S.Germer, M.Macri, J.Kopp, I.Sinning, F.Thomas. Strand-Swapped SH3 Domain Dimer with Superoxide Dismutase Activity Acs Central Science 2025.
DOI: 10.1021/ACSCENTSCI.4C01347