Copper in PDB 8s71: Oxidoreductase B From Phytophthora Sojae

The structure of Oxidoreductase B From Phytophthora Sojae, PDB code: 8s71 was solved by S.Banerjee, S.Turella, J.P.Morth, M.Abou Hachem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	53.42 / 2.05
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.067, 106.897, 44.815, 90, 114.1, 90
R / Rfree (%)	16.8 / 23.2

The binding sites of Copper atom in the Oxidoreductase B From Phytophthora Sojae (pdb code 8s71). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Oxidoreductase B From Phytophthora Sojae, PDB code: 8s71:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Oxidoreductase B From Phytophthora Sojae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Oxidoreductase B From Phytophthora Sojae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu301 b:28.7 occ:1.00 NE2 A:HIS120 1.9 23.5 1.0 ND1 A:HIS24 2.0 27.0 1.0 N A:HIS24 2.3 24.3 1.0 O A:HOH453 2.7 43.9 1.0 CE1 A:HIS120 2.9 29.9 1.0 OH A:TYR188 2.9 23.0 1.0 CD2 A:HIS120 2.9 23.4 1.0 CE1 A:HIS24 3.0 30.8 1.0 CG A:HIS24 3.0 30.6 1.0 CA A:HIS24 3.3 25.2 1.0 CB A:HIS24 3.4 24.1 1.0 OD2 B:ASP180 3.8 61.6 1.0 CG B:ASP180 4.0 46.1 1.0 ND1 A:HIS120 4.0 28.1 1.0 OE1 A:GLN186 4.0 25.3 1.0 CZ A:TYR188 4.0 22.1 1.0 CG A:HIS120 4.0 23.0 1.0 NE2 A:HIS24 4.1 27.8 1.0 CD2 A:HIS24 4.1 30.3 1.0 CB B:ASP180 4.2 40.1 1.0 OE1 A:GLN177 4.4 47.1 1.0 O B:HOH519 4.5 35.8 1.0 O A:HOH450 4.5 19.6 1.0 OD1 B:ASP180 4.6 55.1 1.0 CE2 A:TYR188 4.6 20.9 1.0 C A:HIS24 4.6 23.9 1.0 O A:HIS24 4.9 25.9 1.0 CD A:GLN186 4.9 26.9 1.0 O A:HOH472 5.0 25.7 1.0

Copper binding site 2 out of 2 in the Oxidoreductase B From Phytophthora Sojae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Oxidoreductase B From Phytophthora Sojae within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu301 b:27.8 occ:1.00 ND1 B:HIS24 2.0 21.6 1.0 NE2 B:HIS120 2.1 23.4 1.0 OD2 A:ASP180 2.2 32.3 0.5 N B:HIS24 2.3 21.8 1.0 OH B:TYR188 2.8 19.4 1.0 CD2 B:HIS120 3.0 22.2 1.0 CG B:HIS24 3.0 22.3 1.0 CE1 B:HIS24 3.0 23.2 1.0 CG A:ASP180 3.0 33.7 0.5 CE1 B:HIS120 3.1 29.4 1.0 O A:HOH422 3.1 45.4 1.0 CA B:HIS24 3.2 21.9 1.0 OD1 A:ASP180 3.2 33.2 0.5 CB B:HIS24 3.3 21.7 1.0 CZ B:TYR188 4.0 19.6 1.0 OE1 B:GLN186 4.0 25.2 1.0 NE2 B:HIS24 4.1 24.5 1.0 CD2 B:HIS24 4.1 24.4 1.0 CG B:HIS120 4.1 24.2 1.0 CB A:ASP180 4.2 34.8 0.5 ND1 B:HIS120 4.2 23.9 1.0 NE2 B:GLN177 4.2 46.6 1.0 CB A:ASP180 4.4 32.5 0.5 CG A:ASP180 4.4 36.7 0.5 CE2 B:TYR188 4.5 20.4 1.0 O B:HOH452 4.6 19.2 1.0 C B:HIS24 4.6 20.9 1.0 OD2 A:ASP180 4.6 37.4 0.5 CD B:GLN186 4.9 27.4 1.0 O B:HIS24 4.9 21.2 1.0 CE1 B:TYR188 5.0 19.7 1.0

S.Banerjee, S.Turella, J.P.Morth, M.Abou Hachem. Oxidoreductase B From Phytophthora Sojae To Be Published.