Atomistry » Copper » PDB 8gcq-8po9 » 8k9p
Atomistry »
  Copper »
    PDB 8gcq-8po9 »
      8k9p »

Copper in PDB 8k9p: Neutron X-Ray Joint Structure of Pseudoazurin From Alcaligenes Faecalis

Protein crystallography data

The structure of Neutron X-Ray Joint Structure of Pseudoazurin From Alcaligenes Faecalis, PDB code: 8k9p was solved by Y.Fukuda, K.Kurihara, T.Inoue, T.Tamada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.50
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 50.168, 50.168, 98.292, 90, 90, 120
R / Rfree (%) 21.3 / 27.7

Copper Binding Sites:

The binding sites of Copper atom in the Neutron X-Ray Joint Structure of Pseudoazurin From Alcaligenes Faecalis (pdb code 8k9p). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Neutron X-Ray Joint Structure of Pseudoazurin From Alcaligenes Faecalis, PDB code: 8k9p:

Copper binding site 1 out of 1 in 8k9p

Go back to Copper Binding Sites List in 8k9p
Copper binding site 1 out of 1 in the Neutron X-Ray Joint Structure of Pseudoazurin From Alcaligenes Faecalis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Neutron X-Ray Joint Structure of Pseudoazurin From Alcaligenes Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:31.9
occ:0.95
ND1 A:HIS81 2.0 32.3 1.0
ND1 A:HIS40 2.0 31.4 1.0
SG A:CYS78 2.1 32.4 1.0
SD A:MET86 2.7 30.6 1.0
HB2 A:HIS81 2.8 30.2 1.0
CE1 A:HIS81 2.9 32.9 1.0
HA A:HIS40 2.9 33.0 1.0
CE1 A:HIS40 3.0 33.1 1.0
CG A:HIS81 3.0 33.2 1.0
CG A:HIS40 3.0 33.6 1.0
HE1 A:HIS81 3.1 29.2 1.0
HE1 A:HIS40 3.1 37.9 1.0
HB3 A:HIS40 3.2 35.9 1.0
HB3 A:CYS78 3.2 26.0 1.0
CB A:CYS78 3.2 28.6 1.0
HE3 A:MET86 3.2 56.9 1.0
HB2 A:CYS78 3.3 18.6 1.0
HG2 A:PRO80 3.4 33.1 1.0
CB A:HIS40 3.4 31.8 1.0
CB A:HIS81 3.4 32.0 1.0
CE A:MET86 3.4 37.3 1.0
CA A:HIS40 3.6 32.0 1.0
D A:HIS81 3.6 65.9 1.0
HE1 A:MET86 3.7 42.2 1.0
O A:GLY39 3.8 35.0 1.0
HB3 A:HIS81 3.9 33.5 1.0
NE2 A:HIS81 4.1 34.3 1.0
NE2 A:HIS40 4.1 34.5 1.0
CG A:MET86 4.1 28.7 1.0
D A:ASN41 4.1 26.7 1.0
CD2 A:HIS81 4.1 32.2 1.0
CD2 A:HIS40 4.1 35.2 1.0
HG2 A:MET86 4.2 38.0 1.0
HB2 A:HIS40 4.3 22.4 1.0
HE2 A:MET86 4.3 42.3 1.0
HB3 A:MET16 4.3 62.6 1.0
CG A:PRO80 4.3 34.6 1.0
HB3 A:MET86 4.4 37.2 1.0
C A:GLY39 4.4 34.7 1.0
HD2 A:PRO80 4.4 25.5 1.0
N A:HIS40 4.4 35.5 1.0
N A:HIS81 4.4 35.1 1.0
HB2 A:MET86 4.5 38.3 1.0
CA A:HIS81 4.5 31.4 1.0
CA A:CYS78 4.6 28.3 1.0
CB A:MET86 4.6 30.5 1.0
HG3 A:PRO80 4.7 22.9 1.0
N A:ASN41 4.7 31.9 1.0
C A:HIS40 4.8 33.5 1.0
HB2 A:PRO80 4.8 33.8 1.0
DE2 A:HIS81 4.8 38.6 1.0
HG3 A:MET86 4.8 22.2 1.0
DE2 A:HIS40 4.9 37.0 1.0
HA A:CYS78 4.9 23.1 1.0
SD A:MET16 4.9 36.3 1.0
CD A:PRO80 4.9 33.7 1.0
C A:CYS78 5.0 29.4 1.0
HD2 A:HIS40 5.0 51.0 1.0
HD2 A:HIS81 5.0 31.1 1.0

Reference:

Y.Fukuda, M.Lintuluoto, K.Kurihara, K.Hasegawa, T.Inoue, T.Tamada. Overlooked Hydrogen Bond in A Blue Copper Protein Uncovered By Neutron and Sub- Angstrom Ngstrom Resolution X-Ray Crystallography Biochemistry 2024.
ISSN: ISSN 0006-2960
DOI: 10.1021/ACS.BIOCHEM.3C00517
Page generated: Mon Jul 14 09:04:05 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy