Copper in PDB 7qhm: Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
All present enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound):
7.1.1.8;
7.1.1.9;
Other elements in 7qhm:
The structure of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) also contains other interesting chemical elements:
Copper Binding Sites:
The binding sites of Copper atom in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
(pdb code 7qhm). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the
Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound), PDB code: 7qhm:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
Copper binding site 1 out
of 6 in 7qhm
Go back to
Copper Binding Sites List in 7qhm
Copper binding site 1 out
of 6 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu603
b:67.4
occ:1.00
|
N1
|
D:AZI606
|
1.8
|
42.5
|
1.0
|
|
NE2
|
D:HIS315
|
1.8
|
33.6
|
1.0
|
|
N2
|
D:AZI606
|
2.1
|
42.5
|
1.0
|
|
NE2
|
D:HIS314
|
2.1
|
34.0
|
1.0
|
|
ND1
|
D:HIS265
|
2.3
|
32.1
|
1.0
|
|
CE1
|
D:HIS315
|
2.5
|
33.6
|
1.0
|
|
HE1
|
D:HIS315
|
2.5
|
33.6
|
1.0
|
|
HB2
|
D:HIS265
|
2.8
|
32.1
|
1.0
|
|
N3
|
D:AZI606
|
2.9
|
42.5
|
1.0
|
|
CE1
|
D:HIS314
|
3.0
|
34.0
|
1.0
|
|
CD2
|
D:HIS315
|
3.0
|
33.6
|
1.0
|
|
HE1
|
D:HIS314
|
3.1
|
34.0
|
1.0
|
|
CG
|
D:HIS265
|
3.1
|
32.1
|
1.0
|
|
CE1
|
D:HIS265
|
3.2
|
32.1
|
1.0
|
|
CD2
|
D:HIS314
|
3.2
|
34.0
|
1.0
|
|
HD2
|
D:HIS315
|
3.4
|
33.6
|
1.0
|
|
CB
|
D:HIS265
|
3.4
|
32.1
|
1.0
|
|
HE1
|
D:HIS265
|
3.4
|
32.1
|
1.0
|
|
HD2
|
D:HIS314
|
3.5
|
34.0
|
1.0
|
|
ND1
|
D:HIS315
|
3.6
|
33.6
|
1.0
|
|
HA
|
D:HIS265
|
3.7
|
32.1
|
1.0
|
|
CG
|
D:HIS315
|
3.9
|
33.6
|
1.0
|
|
ND1
|
D:HIS314
|
4.1
|
34.0
|
1.0
|
|
HB3
|
D:HIS265
|
4.2
|
32.1
|
1.0
|
|
CA
|
D:HIS265
|
4.2
|
32.1
|
1.0
|
|
CD2
|
D:HIS265
|
4.2
|
32.1
|
1.0
|
|
NE2
|
D:HIS265
|
4.2
|
32.1
|
1.0
|
|
CG
|
D:HIS314
|
4.2
|
34.0
|
1.0
|
|
HG21
|
D:VAL268
|
4.3
|
31.1
|
1.0
|
|
C4D
|
D:HAS602
|
4.3
|
36.5
|
1.0
|
|
HG22
|
D:VAL268
|
4.3
|
31.1
|
1.0
|
|
ND
|
D:HAS602
|
4.3
|
36.5
|
1.0
|
|
HD1
|
D:HIS315
|
4.3
|
33.6
|
1.0
|
|
C3D
|
D:HAS602
|
4.6
|
36.5
|
1.0
|
|
C1D
|
D:HAS602
|
4.6
|
36.5
|
1.0
|
|
FE
|
D:HAS602
|
4.6
|
36.5
|
1.0
|
|
CHA
|
D:HAS602
|
4.6
|
36.5
|
1.0
|
|
C1A
|
D:HAS602
|
4.7
|
36.5
|
1.0
|
|
C2D
|
D:HAS602
|
4.7
|
36.5
|
1.0
|
|
CG2
|
D:VAL268
|
4.7
|
31.1
|
1.0
|
|
NA
|
D:HAS602
|
4.8
|
36.5
|
1.0
|
|
HD1
|
D:HIS314
|
4.8
|
34.0
|
1.0
|
|
HAD1
|
D:HAS602
|
4.9
|
36.5
|
1.0
|
|
HG23
|
D:VAL311
|
4.9
|
36.5
|
1.0
|
|
O
|
D:VAL311
|
5.0
|
36.5
|
1.0
|
|
Copper binding site 2 out
of 6 in 7qhm
Go back to
Copper Binding Sites List in 7qhm
Copper binding site 2 out
of 6 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cu401
b:57.4
occ:1.00
|
ND1
|
E:HIS244
|
1.9
|
28.8
|
1.0
|
|
SD
|
E:MET296
|
2.4
|
33.1
|
1.0
|
|
SG
|
E:CYS289
|
2.4
|
29.1
|
1.0
|
|
SG
|
E:CYS285
|
2.5
|
30.9
|
1.0
|
|
CU2
|
E:CUA402
|
2.6
|
61.3
|
1.0
|
|
CE1
|
E:HIS244
|
2.7
|
28.8
|
1.0
|
|
HE1
|
E:HIS244
|
2.8
|
28.8
|
1.0
|
|
HB3
|
E:CYS289
|
2.9
|
29.1
|
1.0
|
|
HE1
|
E:MET296
|
3.0
|
33.1
|
1.0
|
|
CG
|
E:HIS244
|
3.1
|
28.8
|
1.0
|
|
CE
|
E:MET296
|
3.2
|
33.1
|
1.0
|
|
CB
|
E:CYS289
|
3.2
|
29.1
|
1.0
|
|
HB3
|
E:HIS244
|
3.2
|
28.8
|
1.0
|
|
HE2
|
E:MET296
|
3.4
|
33.1
|
1.0
|
|
HB2
|
E:CYS289
|
3.5
|
29.1
|
1.0
|
|
HA
|
E:HIS244
|
3.5
|
28.8
|
1.0
|
|
CB
|
E:HIS244
|
3.6
|
28.8
|
1.0
|
|
HB2
|
E:CYS285
|
3.6
|
30.9
|
1.0
|
|
CB
|
E:CYS285
|
3.7
|
30.9
|
1.0
|
|
HB3
|
E:CYS285
|
3.9
|
30.9
|
1.0
|
|
NE2
|
E:HIS244
|
3.9
|
28.8
|
1.0
|
|
CG
|
E:MET296
|
4.0
|
33.1
|
1.0
|
|
HE3
|
E:MET296
|
4.0
|
33.1
|
1.0
|
|
HB2
|
E:MET296
|
4.1
|
33.1
|
1.0
|
|
CD2
|
E:HIS244
|
4.1
|
28.8
|
1.0
|
|
CA
|
E:HIS244
|
4.1
|
28.8
|
1.0
|
|
O
|
E:GLU287
|
4.2
|
30.1
|
1.0
|
|
H
|
E:SER245
|
4.2
|
29.7
|
1.0
|
|
HG3
|
E:MET296
|
4.3
|
33.1
|
1.0
|
|
HA
|
E:HIS293
|
4.3
|
29.0
|
1.0
|
|
HD1
|
E:TRP153
|
4.3
|
31.3
|
1.0
|
|
HB3
|
E:MET296
|
4.4
|
33.1
|
1.0
|
|
ND1
|
E:HIS293
|
4.4
|
29.0
|
1.0
|
|
CB
|
E:MET296
|
4.4
|
33.1
|
1.0
|
|
HB2
|
E:HIS244
|
4.5
|
28.8
|
1.0
|
|
H
|
E:CYS289
|
4.6
|
29.1
|
1.0
|
|
CA
|
E:CYS289
|
4.6
|
29.1
|
1.0
|
|
HG2
|
E:MET296
|
4.6
|
33.1
|
1.0
|
|
HE2
|
E:HIS244
|
4.7
|
28.8
|
1.0
|
|
HB1
|
E:ALA150
|
4.8
|
30.1
|
1.0
|
|
N
|
E:CYS289
|
4.8
|
29.1
|
1.0
|
|
N
|
E:SER245
|
4.9
|
29.7
|
1.0
|
|
O
|
E:ALA243
|
5.0
|
27.4
|
1.0
|
|
HB2
|
E:HIS293
|
5.0
|
29.0
|
1.0
|
|
HD2
|
E:HIS244
|
5.0
|
28.8
|
1.0
|
|
Copper binding site 3 out
of 6 in 7qhm
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Copper Binding Sites List in 7qhm
Copper binding site 3 out
of 6 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cu402
b:61.3
occ:1.00
|
ND1
|
E:HIS293
|
1.9
|
29.0
|
1.0
|
|
SG
|
E:CYS285
|
2.3
|
30.9
|
1.0
|
|
SG
|
E:CYS289
|
2.4
|
29.1
|
1.0
|
|
O
|
E:GLU287
|
2.5
|
30.1
|
1.0
|
|
CU1
|
E:CUA401
|
2.6
|
57.4
|
1.0
|
|
CE1
|
E:HIS293
|
2.8
|
29.0
|
1.0
|
|
HE1
|
E:HIS293
|
2.9
|
29.0
|
1.0
|
|
H
|
E:CYS289
|
2.9
|
29.1
|
1.0
|
|
CG
|
E:HIS293
|
3.0
|
29.0
|
1.0
|
|
HB3
|
E:CYS289
|
3.1
|
29.1
|
1.0
|
|
HB3
|
E:CYS285
|
3.1
|
30.9
|
1.0
|
|
HB2
|
E:HIS293
|
3.2
|
29.0
|
1.0
|
|
CB
|
E:CYS289
|
3.3
|
29.1
|
1.0
|
|
N
|
E:CYS289
|
3.4
|
29.1
|
1.0
|
|
HA
|
E:HIS293
|
3.4
|
29.0
|
1.0
|
|
CB
|
E:CYS285
|
3.4
|
30.9
|
1.0
|
|
CB
|
E:HIS293
|
3.5
|
29.0
|
1.0
|
|
HA
|
E:MET288
|
3.6
|
29.1
|
1.0
|
|
C
|
E:GLU287
|
3.6
|
30.1
|
1.0
|
|
NE2
|
E:HIS293
|
3.9
|
29.0
|
1.0
|
|
CA
|
E:HIS293
|
3.9
|
29.0
|
1.0
|
|
HB2
|
E:CYS285
|
3.9
|
30.9
|
1.0
|
|
CA
|
E:CYS289
|
4.0
|
29.1
|
1.0
|
|
O
|
E:HIS293
|
4.0
|
29.0
|
1.0
|
|
CD2
|
E:HIS293
|
4.1
|
29.0
|
1.0
|
|
C
|
E:MET288
|
4.1
|
29.1
|
1.0
|
|
HB2
|
E:CYS289
|
4.1
|
29.1
|
1.0
|
|
CA
|
E:MET288
|
4.2
|
29.1
|
1.0
|
|
H
|
E:GLU287
|
4.2
|
30.1
|
1.0
|
|
ND1
|
E:HIS244
|
4.3
|
28.8
|
1.0
|
|
N
|
E:MET288
|
4.3
|
29.1
|
1.0
|
|
HA
|
E:HIS244
|
4.4
|
28.8
|
1.0
|
|
SD
|
E:MET296
|
4.4
|
33.1
|
1.0
|
|
C
|
E:HIS293
|
4.4
|
29.0
|
1.0
|
|
HB3
|
E:HIS293
|
4.5
|
29.0
|
1.0
|
|
C
|
E:CYS285
|
4.5
|
30.9
|
1.0
|
|
N
|
E:GLU287
|
4.5
|
30.1
|
1.0
|
|
H
|
E:ALA286
|
4.5
|
29.5
|
1.0
|
|
HB2
|
E:MET296
|
4.5
|
33.1
|
1.0
|
|
CA
|
E:CYS285
|
4.5
|
30.9
|
1.0
|
|
N
|
E:ALA286
|
4.6
|
29.5
|
1.0
|
|
HA
|
E:CYS289
|
4.6
|
29.1
|
1.0
|
|
HE2
|
E:HIS293
|
4.7
|
29.0
|
1.0
|
|
CA
|
E:GLU287
|
4.7
|
30.1
|
1.0
|
|
H
|
E:GLY290
|
4.7
|
28.7
|
1.0
|
|
O
|
E:CYS285
|
4.8
|
30.9
|
1.0
|
|
HE1
|
E:HIS244
|
4.8
|
28.8
|
1.0
|
|
HA
|
E:CYS285
|
4.9
|
30.9
|
1.0
|
|
HD2
|
E:HIS293
|
4.9
|
29.0
|
1.0
|
|
H
|
E:SER245
|
4.9
|
29.7
|
1.0
|
|
C
|
E:CYS289
|
5.0
|
29.1
|
1.0
|
|
CE1
|
E:HIS244
|
5.0
|
28.8
|
1.0
|
|
HD1
|
E:TRP153
|
5.0
|
31.3
|
1.0
|
|
Copper binding site 4 out
of 6 in 7qhm
Go back to
Copper Binding Sites List in 7qhm
Copper binding site 4 out
of 6 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Cu603
b:56.9
occ:1.00
|
NE2
|
Q:HIS314
|
1.8
|
21.8
|
1.0
|
|
N2
|
Q:AZI605
|
2.1
|
25.6
|
1.0
|
|
ND1
|
Q:HIS265
|
2.1
|
21.9
|
1.0
|
|
NE2
|
Q:HIS315
|
2.1
|
22.5
|
1.0
|
|
N1
|
Q:AZI605
|
2.1
|
25.6
|
1.0
|
|
N3
|
Q:AZI605
|
2.6
|
25.6
|
1.0
|
|
CE1
|
Q:HIS314
|
2.7
|
21.8
|
1.0
|
|
CD2
|
Q:HIS314
|
2.8
|
21.8
|
1.0
|
|
CD2
|
Q:HIS315
|
2.9
|
22.5
|
1.0
|
|
HB2
|
Q:HIS265
|
2.9
|
21.9
|
1.0
|
|
CE1
|
Q:HIS265
|
2.9
|
21.9
|
1.0
|
|
HE1
|
Q:HIS314
|
3.0
|
21.8
|
1.0
|
|
HD2
|
Q:HIS315
|
3.0
|
22.5
|
1.0
|
|
CG
|
Q:HIS265
|
3.0
|
21.9
|
1.0
|
|
HD2
|
Q:HIS314
|
3.1
|
21.8
|
1.0
|
|
HE1
|
Q:HIS265
|
3.1
|
21.9
|
1.0
|
|
CE1
|
Q:HIS315
|
3.2
|
22.5
|
1.0
|
|
CB
|
Q:HIS265
|
3.5
|
21.9
|
1.0
|
|
HE1
|
Q:HIS315
|
3.5
|
22.5
|
1.0
|
|
ND1
|
Q:HIS314
|
3.8
|
21.8
|
1.0
|
|
CG
|
Q:HIS314
|
3.9
|
21.8
|
1.0
|
|
CG
|
Q:HIS315
|
4.0
|
22.5
|
1.0
|
|
NE2
|
Q:HIS265
|
4.0
|
21.9
|
1.0
|
|
HA
|
Q:HIS265
|
4.0
|
21.9
|
1.0
|
|
CD2
|
Q:HIS265
|
4.1
|
21.9
|
1.0
|
|
ND1
|
Q:HIS315
|
4.1
|
22.5
|
1.0
|
|
HB3
|
Q:HIS265
|
4.2
|
21.9
|
1.0
|
|
CA
|
Q:HIS265
|
4.4
|
21.9
|
1.0
|
|
C4D
|
Q:HAS602
|
4.5
|
28.8
|
1.0
|
|
HG23
|
Q:VAL311
|
4.6
|
24.4
|
1.0
|
|
C3D
|
Q:HAS602
|
4.6
|
28.8
|
1.0
|
|
HD1
|
Q:HIS314
|
4.6
|
21.8
|
1.0
|
|
ND
|
Q:HAS602
|
4.6
|
28.8
|
1.0
|
|
HG21
|
Q:VAL268
|
4.6
|
22.0
|
1.0
|
|
HA
|
Q:TRP312
|
4.7
|
22.0
|
1.0
|
|
O
|
Q:TRP312
|
4.7
|
22.0
|
1.0
|
|
C2D
|
Q:HAS602
|
4.7
|
28.8
|
1.0
|
|
C1D
|
Q:HAS602
|
4.7
|
28.8
|
1.0
|
|
HG22
|
Q:VAL268
|
4.7
|
22.0
|
1.0
|
|
O
|
Q:VAL311
|
4.8
|
24.4
|
1.0
|
|
HD1
|
Q:HIS315
|
4.9
|
22.5
|
1.0
|
|
HD2
|
Q:HIS265
|
4.9
|
21.9
|
1.0
|
|
HAD1
|
Q:HAS602
|
4.9
|
28.8
|
1.0
|
|
CHA
|
Q:HAS602
|
4.9
|
28.8
|
1.0
|
|
FE
|
Q:HAS602
|
4.9
|
28.8
|
1.0
|
|
Copper binding site 5 out
of 6 in 7qhm
Go back to
Copper Binding Sites List in 7qhm
Copper binding site 5 out
of 6 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Cu402
b:56.5
occ:1.00
|
ND1
|
R:HIS244
|
1.9
|
13.3
|
1.0
|
|
SD
|
R:MET296
|
2.4
|
18.7
|
1.0
|
|
SG
|
R:CYS285
|
2.4
|
18.1
|
1.0
|
|
SG
|
R:CYS289
|
2.4
|
17.4
|
1.0
|
|
CU2
|
R:CUA403
|
2.6
|
50.3
|
1.0
|
|
CE1
|
R:HIS244
|
2.7
|
13.3
|
1.0
|
|
HE1
|
R:HIS244
|
2.7
|
13.3
|
1.0
|
|
CG
|
R:HIS244
|
3.1
|
13.3
|
1.0
|
|
HE1
|
R:MET296
|
3.2
|
18.7
|
1.0
|
|
HB3
|
R:CYS289
|
3.2
|
17.4
|
1.0
|
|
HB3
|
R:HIS244
|
3.2
|
13.3
|
1.0
|
|
CE
|
R:MET296
|
3.3
|
18.7
|
1.0
|
|
CB
|
R:CYS289
|
3.4
|
17.4
|
1.0
|
|
HB2
|
R:CYS285
|
3.5
|
18.1
|
1.0
|
|
HE2
|
R:MET296
|
3.5
|
18.7
|
1.0
|
|
CB
|
R:CYS285
|
3.5
|
18.1
|
1.0
|
|
HB2
|
R:CYS289
|
3.6
|
17.4
|
1.0
|
|
CB
|
R:HIS244
|
3.6
|
13.3
|
1.0
|
|
HA
|
R:HIS244
|
3.7
|
13.3
|
1.0
|
|
HB3
|
R:CYS285
|
3.7
|
18.1
|
1.0
|
|
HD1
|
R:TRP153
|
3.9
|
15.4
|
1.0
|
|
NE2
|
R:HIS244
|
3.9
|
13.3
|
1.0
|
|
CG
|
R:MET296
|
4.0
|
18.7
|
1.0
|
|
ND1
|
R:HIS293
|
4.0
|
15.8
|
1.0
|
|
CD2
|
R:HIS244
|
4.1
|
13.3
|
1.0
|
|
HB3
|
R:MET296
|
4.1
|
18.7
|
1.0
|
|
HE3
|
R:MET296
|
4.2
|
18.7
|
1.0
|
|
CA
|
R:HIS244
|
4.2
|
13.3
|
1.0
|
|
HA
|
R:HIS293
|
4.2
|
15.8
|
1.0
|
|
O
|
R:GLU287
|
4.2
|
18.3
|
1.0
|
|
HG2
|
R:MET296
|
4.3
|
18.7
|
1.0
|
|
HB2
|
R:MET296
|
4.4
|
18.7
|
1.0
|
|
CB
|
R:MET296
|
4.4
|
18.7
|
1.0
|
|
H
|
R:SER245
|
4.5
|
17.2
|
1.0
|
|
HB2
|
R:HIS244
|
4.5
|
13.3
|
1.0
|
|
HE1
|
R:HIS293
|
4.5
|
15.8
|
1.0
|
|
HE2
|
R:HIS244
|
4.6
|
13.3
|
1.0
|
|
HG3
|
R:MET296
|
4.6
|
18.7
|
1.0
|
|
CE1
|
R:HIS293
|
4.7
|
15.8
|
1.0
|
|
CD1
|
R:TRP153
|
4.7
|
15.4
|
1.0
|
|
CA
|
R:CYS289
|
4.8
|
17.4
|
1.0
|
|
O
|
R:ALA243
|
4.8
|
17.1
|
1.0
|
|
CA
|
R:CYS285
|
4.9
|
18.1
|
1.0
|
|
HB1
|
R:ALA150
|
4.9
|
18.2
|
1.0
|
|
HA
|
R:TRP153
|
4.9
|
15.4
|
1.0
|
|
HD2
|
R:HIS244
|
5.0
|
13.3
|
1.0
|
|
HA
|
R:CYS285
|
5.0
|
18.1
|
1.0
|
|
Copper binding site 6 out
of 6 in 7qhm
Go back to
Copper Binding Sites List in 7qhm
Copper binding site 6 out
of 6 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Cu403
b:50.3
occ:1.00
|
ND1
|
R:HIS293
|
1.6
|
15.8
|
1.0
|
|
CE1
|
R:HIS293
|
2.2
|
15.8
|
1.0
|
|
HE1
|
R:HIS293
|
2.2
|
15.8
|
1.0
|
|
SG
|
R:CYS285
|
2.3
|
18.1
|
1.0
|
|
SG
|
R:CYS289
|
2.4
|
17.4
|
1.0
|
|
O
|
R:GLU287
|
2.5
|
18.3
|
1.0
|
|
CU1
|
R:CUA402
|
2.6
|
56.5
|
1.0
|
|
CG
|
R:HIS293
|
2.9
|
15.8
|
1.0
|
|
HB3
|
R:CYS285
|
3.0
|
18.1
|
1.0
|
|
CB
|
R:CYS285
|
3.3
|
18.1
|
1.0
|
|
HB3
|
R:CYS289
|
3.3
|
17.4
|
1.0
|
|
NE2
|
R:HIS293
|
3.4
|
15.8
|
1.0
|
|
H
|
R:CYS289
|
3.4
|
17.4
|
1.0
|
|
CB
|
R:CYS289
|
3.5
|
17.4
|
1.0
|
|
HA
|
R:HIS293
|
3.5
|
15.8
|
1.0
|
|
H
|
R:GLU287
|
3.5
|
18.3
|
1.0
|
|
HB2
|
R:HIS293
|
3.5
|
15.8
|
1.0
|
|
C
|
R:GLU287
|
3.6
|
18.3
|
1.0
|
|
CB
|
R:HIS293
|
3.6
|
15.8
|
1.0
|
|
N
|
R:CYS289
|
3.7
|
17.4
|
1.0
|
|
CD2
|
R:HIS293
|
3.7
|
15.8
|
1.0
|
|
HA
|
R:MET288
|
3.8
|
18.4
|
1.0
|
|
HB2
|
R:CYS285
|
3.8
|
18.1
|
1.0
|
|
CA
|
R:HIS293
|
4.0
|
15.8
|
1.0
|
|
O
|
R:HIS293
|
4.0
|
15.8
|
1.0
|
|
HE2
|
R:HIS293
|
4.1
|
15.8
|
1.0
|
|
ND1
|
R:HIS244
|
4.2
|
13.3
|
1.0
|
|
C
|
R:MET288
|
4.2
|
18.4
|
1.0
|
|
CA
|
R:CYS289
|
4.2
|
17.4
|
1.0
|
|
HB2
|
R:CYS289
|
4.2
|
17.4
|
1.0
|
|
N
|
R:GLU287
|
4.3
|
18.3
|
1.0
|
|
CA
|
R:MET288
|
4.3
|
18.4
|
1.0
|
|
HA
|
R:HIS244
|
4.3
|
13.3
|
1.0
|
|
C
|
R:CYS285
|
4.4
|
18.1
|
1.0
|
|
N
|
R:MET288
|
4.4
|
18.4
|
1.0
|
|
C
|
R:HIS293
|
4.4
|
15.8
|
1.0
|
|
CA
|
R:CYS285
|
4.4
|
18.1
|
1.0
|
|
O
|
R:CYS285
|
4.4
|
18.1
|
1.0
|
|
SD
|
R:MET296
|
4.5
|
18.7
|
1.0
|
|
HB3
|
R:HIS293
|
4.5
|
15.8
|
1.0
|
|
CA
|
R:GLU287
|
4.6
|
18.3
|
1.0
|
|
HD2
|
R:HIS293
|
4.6
|
15.8
|
1.0
|
|
HB3
|
R:MET296
|
4.7
|
18.7
|
1.0
|
|
HD1
|
R:TRP153
|
4.8
|
15.4
|
1.0
|
|
HE1
|
R:HIS244
|
4.8
|
13.3
|
1.0
|
|
N
|
R:ALA286
|
4.8
|
16.6
|
1.0
|
|
HA
|
R:CYS285
|
4.8
|
18.1
|
1.0
|
|
HB3
|
R:GLU287
|
4.9
|
18.3
|
1.0
|
|
CE1
|
R:HIS244
|
4.9
|
13.3
|
1.0
|
|
HB3
|
R:HIS244
|
4.9
|
13.3
|
1.0
|
|
HA
|
R:CYS289
|
4.9
|
17.4
|
1.0
|
|
H
|
R:ALA286
|
4.9
|
16.6
|
1.0
|
|
Reference:
W.C.Kao,
C.Ortmann De Percin Northumberland,
T.C.Cheng,
J.Ortiz,
A.Durand,
O.Von Loeffelholz,
O.Schilling,
M.L.Biniossek,
B.P.Klaholz,
C.Hunte.
Structural Basis For Safe and Efficient Energy Conversion in A Respiratory Supercomplex. Nat Commun V. 13 545 2022.
ISSN: ESSN 2041-1723
PubMed: 35087070
DOI: 10.1038/S41467-022-28179-X
Page generated: Mon Jul 14 08:23:20 2025
|
