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Copper in PDB 7f8k: Room Temperature Structure of Bacterial Copper Amine Oxidase Determined By Serial Femtosecond Crystallography

Enzymatic activity of Room Temperature Structure of Bacterial Copper Amine Oxidase Determined By Serial Femtosecond Crystallography

All present enzymatic activity of Room Temperature Structure of Bacterial Copper Amine Oxidase Determined By Serial Femtosecond Crystallography:
1.4.3.21;

Protein crystallography data

The structure of Room Temperature Structure of Bacterial Copper Amine Oxidase Determined By Serial Femtosecond Crystallography, PDB code: 7f8k was solved by T.Murakawa, T.Okajima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.96 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 158.75, 64.74, 93.55, 90, 112.33, 90
R / Rfree (%) 15.4 / 17.9

Copper Binding Sites:

The binding sites of Copper atom in the Room Temperature Structure of Bacterial Copper Amine Oxidase Determined By Serial Femtosecond Crystallography (pdb code 7f8k). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Room Temperature Structure of Bacterial Copper Amine Oxidase Determined By Serial Femtosecond Crystallography, PDB code: 7f8k:

Copper binding site 1 out of 1 in 7f8k

Go back to Copper Binding Sites List in 7f8k
Copper binding site 1 out of 1 in the Room Temperature Structure of Bacterial Copper Amine Oxidase Determined By Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Room Temperature Structure of Bacterial Copper Amine Oxidase Determined By Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu701

b:42.0
occ:1.00
 NE2 A:HIS431 2.0 41.8 1.0
ND1 A:HIS592 2.0 41.0 1.0
O A:HOH869 2.0 36.6 1.0
NE2 A:HIS433 2.1 42.8 1.0
O A:HOH931 2.4 42.7 1.0
CE1 A:HIS431 3.0 39.8 1.0
CD2 A:HIS433 3.0 37.8 1.0
CD2 A:HIS431 3.0 38.4 1.0
CE1 A:HIS592 3.0 39.2 1.0
CG A:HIS592 3.0 41.1 1.0
CE1 A:HIS433 3.1 38.1 1.0
CB A:HIS592 3.4 39.1 1.0
ND1 A:HIS431 4.1 37.6 1.0
NE2 A:HIS592 4.1 42.8 1.0
O A:HOH835 4.1 45.1 1.0
CG A:HIS431 4.1 38.6 1.0
CD2 A:HIS592 4.2 41.3 1.0
CG A:HIS433 4.2 42.3 1.0
ND1 A:HIS433 4.2 38.5 1.0
O A:HOH844 4.3 35.7 1.0
O2 A:TPQ382 4.6 53.6 1.0
CE A:MET602 4.7 50.4 1.0
SD A:MET602 4.8 49.5 1.0
CA A:HIS592 4.9 37.7 1.0

Reference:

T.Murakawa, M.Suzuki, T.Arima, M.Sugahara, T.Tanaka, R.Tanaka, S.Iwata, E.Nango, K.Tono, H.Hayashi, K.Fukui, T.Yano, K.Tanizawa, T.Okajima. Microcrystal Preparation For Serial Femtosecond X-Ray Crystallography of Bacterial Copper Amine Oxidase Acta Crystallogr.,Sect.F 2021.
ISSN: ESSN 2053-230X
Page generated: Mon Jul 14 08:02:34 2025

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