Atomistry » Copper » PDB 7a8v-7ev7 » 7e1x
Atomistry »
  Copper »
    PDB 7a8v-7ev7 »
      7e1x »

Copper in PDB 7e1x: Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47

Enzymatic activity of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47

All present enzymatic activity of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47:
7.1.1.8; 7.1.1.9;

Other elements in 7e1x:

The structure of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47 also contains other interesting chemical elements:

Iron (Fe) 16 atoms
Fluorine (F) 6 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47 (pdb code 7e1x). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47, PDB code: 7e1x:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in 7e1x

Go back to Copper Binding Sites List in 7e1x
Copper binding site 1 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu401

b:102.1
occ:1.00
 CU E:CU402 1.2 108.3 1.0
ND1 E:HIS281 2.1 73.0 1.0
SG E:CYS277 2.2 74.8 1.0
SG E:CYS273 2.2 75.7 1.0
CE1 E:HIS281 2.7 73.0 1.0
CB E:CYS273 2.8 75.7 1.0
SD E:MET284 3.1 76.7 1.0
CG E:HIS281 3.4 73.0 1.0
CB E:CYS277 3.4 74.8 1.0
O E:HIS281 3.7 73.0 1.0
ND1 E:HIS232 3.9 70.2 1.0
CA E:HIS281 3.9 73.0 1.0
NE2 E:HIS281 4.0 73.0 1.0
CB E:HIS281 4.0 73.0 1.0
CA E:CYS273 4.1 75.7 1.0
CG E:MET284 4.2 76.7 1.0
CE E:MET284 4.2 76.7 1.0
CD2 E:HIS281 4.3 73.0 1.0
C E:HIS281 4.3 73.0 1.0
N E:CYS277 4.3 74.8 1.0
C E:CYS273 4.4 75.7 1.0
CA E:CYS277 4.5 74.8 1.0
CB E:MET284 4.6 76.7 1.0
CE1 E:HIS232 4.8 70.2 1.0
N E:GLU275 4.8 76.7 1.0
O E:CYS273 4.8 75.7 1.0
CG E:HIS232 4.8 70.2 1.0
CB E:HIS232 4.8 70.2 1.0
N E:THR274 4.8 74.0 1.0
O E:GLU275 4.9 76.7 1.0
C E:GLU275 4.9 76.7 1.0
CA E:HIS232 5.0 70.2 1.0

Copper binding site 2 out of 8 in 7e1x

Go back to Copper Binding Sites List in 7e1x
Copper binding site 2 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu402

b:108.3
occ:1.00
 CU E:CU401 1.2 102.1 1.0
SG E:CYS277 2.2 74.8 1.0
SG E:CYS273 2.2 75.7 1.0
SD E:MET284 2.3 76.7 1.0
CB E:CYS273 2.9 75.7 1.0
ND1 E:HIS232 3.0 70.2 1.0
CE E:MET284 3.1 76.7 1.0
ND1 E:HIS281 3.3 73.0 1.0
CB E:CYS277 3.5 74.8 1.0
CG E:MET284 3.7 76.7 1.0
CE1 E:HIS281 3.8 73.0 1.0
CE1 E:HIS232 3.9 70.2 1.0
CG E:HIS232 3.9 70.2 1.0
CB E:HIS232 4.1 70.2 1.0
CB E:MET284 4.1 76.7 1.0
CA E:CYS273 4.4 75.7 1.0
O E:HIS281 4.4 73.0 1.0
CG E:HIS281 4.5 73.0 1.0
CA E:HIS232 4.6 70.2 1.0
CA E:HIS281 4.6 73.0 1.0
CA E:CYS277 4.8 74.8 1.0
N E:GLY233 4.8 74.1 1.0
N E:CYS277 4.9 74.8 1.0
CB E:HIS281 5.0 73.0 1.0
C E:CYS273 5.0 75.7 1.0

Copper binding site 3 out of 8 in 7e1x

Go back to Copper Binding Sites List in 7e1x
Copper binding site 3 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu604

b:132.6
occ:1.00
 O F:HIS314 2.8 69.6 1.0
OH F:TYR154 3.9 71.3 1.0
C F:HIS314 4.0 69.6 1.0
O2A F:HEA606 4.2 70.7 1.0
OD1 F:ASP390 4.4 73.7 1.0
OG1 F:THR389 4.5 73.0 1.0
OD2 F:ASP390 4.6 73.7 1.0
CA F:MET315 4.8 74.2 1.0
N F:MET315 4.8 74.2 1.0
CG F:ASP390 4.8 73.7 1.0
CA F:HIS314 4.9 69.6 1.0
CZ F:TYR154 4.9 71.3 1.0

Copper binding site 4 out of 8 in 7e1x

Go back to Copper Binding Sites List in 7e1x
Copper binding site 4 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu605

b:139.1
occ:1.00
 NE2 F:HIS314 1.4 69.6 1.0
ND1 F:HIS264 1.7 65.2 1.0
CE1 F:HIS264 2.1 65.2 1.0
CE1 F:HIS314 2.2 69.6 1.0
CD2 F:HIS314 2.6 69.6 1.0
CE1 F:HIS313 2.6 71.0 1.0
NE2 F:HIS313 2.9 71.0 1.0
CG F:HIS264 2.9 65.2 1.0
NE2 F:HIS264 3.3 65.2 1.0
ND1 F:HIS314 3.3 69.6 1.0
CG F:HIS314 3.5 69.6 1.0
ND1 F:HIS313 3.7 71.0 1.0
CD2 F:HIS264 3.7 65.2 1.0
CB F:HIS264 3.8 65.2 1.0
CD2 F:HIS313 4.0 71.0 1.0
CG F:HIS313 4.4 71.0 1.0
CA F:HIS264 4.5 65.2 1.0
NA F:HEA606 4.5 70.7 1.0
C1A F:HEA606 4.6 70.7 1.0
CHA F:HEA606 4.8 70.7 1.0
C4A F:HEA606 4.9 70.7 1.0
C4D F:HEA606 4.9 70.7 1.0
C2A F:HEA606 4.9 70.7 1.0
ND F:HEA606 5.0 70.7 1.0
FE F:HEA606 5.0 70.7 1.0

Copper binding site 5 out of 8 in 7e1x

Go back to Copper Binding Sites List in 7e1x
Copper binding site 5 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu401

b:93.3
occ:1.00
 CU Q:CU402 1.2 86.6 1.0
SG Q:CYS277 2.1 59.6 1.0
SG Q:CYS273 2.2 61.2 1.0
SD Q:MET284 2.5 59.7 1.0
ND1 Q:HIS281 2.8 59.1 1.0
CB Q:CYS273 2.9 61.2 1.0
ND1 Q:HIS232 3.4 54.4 1.0
CE1 Q:HIS281 3.4 59.1 1.0
CB Q:CYS277 3.6 59.6 1.0
CE Q:MET284 3.6 59.7 1.0
CG Q:MET284 3.7 59.7 1.0
O Q:HIS281 3.9 59.1 1.0
CG Q:HIS281 4.0 59.1 1.0
CB Q:MET284 4.2 59.7 1.0
CE1 Q:HIS232 4.2 54.4 1.0
CA Q:HIS281 4.3 59.1 1.0
CA Q:CYS273 4.3 61.2 1.0
CG Q:HIS232 4.3 54.4 1.0
CB Q:HIS232 4.5 54.4 1.0
CB Q:HIS281 4.5 59.1 1.0
C Q:HIS281 4.6 59.1 1.0
NE2 Q:HIS281 4.6 59.1 1.0
N Q:CYS277 4.7 59.6 1.0
C Q:CYS273 4.7 61.2 1.0
CA Q:CYS277 4.7 59.6 1.0
CD1 Q:TRP138 4.8 57.5 1.0
CA Q:HIS232 4.9 54.4 1.0
CD2 Q:HIS281 5.0 59.1 1.0

Copper binding site 6 out of 8 in 7e1x

Go back to Copper Binding Sites List in 7e1x
Copper binding site 6 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu402

b:86.6
occ:1.00
 CU Q:CU401 1.2 93.3 1.0
ND1 Q:HIS281 2.0 59.1 1.0
SG Q:CYS277 2.2 59.6 1.0
SG Q:CYS273 2.2 61.2 1.0
CE1 Q:HIS281 2.3 59.1 1.0
CB Q:CYS273 3.0 61.2 1.0
CG Q:HIS281 3.3 59.1 1.0
NE2 Q:HIS281 3.6 59.1 1.0
SD Q:MET284 3.7 59.7 1.0
CB Q:CYS277 3.7 59.6 1.0
O Q:HIS281 4.0 59.1 1.0
ND1 Q:HIS232 4.0 54.4 1.0
CD2 Q:HIS281 4.1 59.1 1.0
CB Q:HIS281 4.1 59.1 1.0
N Q:CYS277 4.1 59.6 1.0
CA Q:CYS273 4.1 61.2 1.0
C Q:CYS273 4.2 61.2 1.0
N Q:GLU275 4.2 63.1 1.0
O Q:GLU275 4.2 63.1 1.0
CA Q:HIS281 4.3 59.1 1.0
C Q:GLU275 4.3 63.1 1.0
O Q:CYS273 4.4 61.2 1.0
N Q:THR274 4.5 60.3 1.0
CA Q:CYS277 4.5 59.6 1.0
C Q:HIS281 4.6 59.1 1.0
CA Q:GLU275 4.6 63.1 1.0
CB Q:GLU275 4.6 63.1 1.0
CG Q:MET284 4.7 59.7 1.0
CB Q:HIS232 4.8 54.4 1.0
CA Q:HIS232 4.8 54.4 1.0
CE Q:MET284 4.8 59.7 1.0
N Q:MET276 4.8 58.7 1.0
CG Q:HIS232 4.8 54.4 1.0
C Q:MET276 4.8 58.7 1.0
N Q:GLY233 4.9 57.6 1.0
CE1 Q:HIS232 4.9 54.4 1.0

Copper binding site 7 out of 8 in 7e1x

Go back to Copper Binding Sites List in 7e1x
Copper binding site 7 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47 within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cu604

b:121.7
occ:1.00
 OD1 R:ASP390 2.8 61.8 1.0
OD2 R:ASP390 2.9 61.8 1.0
CG R:ASP390 3.2 61.8 1.0
OH R:TYR154 3.3 61.1 1.0
OE2 Q:GLU275 3.8 63.1 1.0
CZ R:TYR154 4.1 61.1 1.0
OE1 Q:GLU275 4.2 63.1 1.0
CE2 R:TYR154 4.4 61.1 1.0
CD Q:GLU275 4.4 63.1 1.0
CB R:ASP390 4.7 61.8 1.0
O R:HIS314 5.0 58.6 1.0
OD1 Q:ASP244 5.0 64.8 1.0

Copper binding site 8 out of 8 in 7e1x

Go back to Copper Binding Sites List in 7e1x
Copper binding site 8 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47 within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cu605

b:138.9
occ:1.00
 NE2 R:HIS314 2.1 58.6 1.0
ND1 R:HIS264 2.1 55.4 1.0
CE1 R:HIS313 2.5 58.6 1.0
NE2 R:HIS313 2.6 58.6 1.0
CE1 R:HIS314 2.7 58.6 1.0
CE1 R:HIS264 2.9 55.4 1.0
CD2 R:HIS314 3.2 58.6 1.0
CG R:HIS264 3.3 55.4 1.0
ND1 R:HIS313 3.7 58.6 1.0
CB R:HIS264 3.8 55.4 1.0
CD2 R:HIS313 3.9 58.6 1.0
ND1 R:HIS314 3.9 58.6 1.0
NE2 R:HIS264 4.1 55.4 1.0
CG R:HIS314 4.2 58.6 1.0
NA R:HEA606 4.3 58.5 1.0
CD2 R:HIS264 4.3 55.4 1.0
CG R:HIS313 4.4 58.6 1.0
C1A R:HEA606 4.5 58.5 1.0
C4A R:HEA606 4.6 58.5 1.0
CA R:HIS264 4.6 55.4 1.0
FE R:HEA606 4.6 58.5 1.0
ND R:HEA606 4.8 58.5 1.0
CHA R:HEA606 4.9 58.5 1.0
C4D R:HEA606 4.9 58.5 1.0
C3A R:HEA606 4.9 58.5 1.0
C2A R:HEA606 5.0 58.5 1.0

Reference:

S.Zhou, W.Wang, Y.Gao, H.Gong, Z.Rao. Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in Presence of TB47 To Be Published.
Page generated: Mon Jul 14 07:58:49 2025

Last articles

Mg in 3T8Q
Mg in 3T8O
Mg in 3T7A
Mg in 3T77
Mg in 3T6E
Mg in 3T6R
Mg in 3T5T
Mg in 3T6D
Mg in 3T2O
Mg in 3T6C
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy