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Copper in PDB 7au3: Cytochrome C Oxidase Structure in F-State

Enzymatic activity of Cytochrome C Oxidase Structure in F-State

All present enzymatic activity of Cytochrome C Oxidase Structure in F-State:
7.1.1.9;

Other elements in 7au3:

The structure of Cytochrome C Oxidase Structure in F-State also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Manganese (Mn) 1 atom
Iron (Fe) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Cytochrome C Oxidase Structure in F-State (pdb code 7au3). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Cytochrome C Oxidase Structure in F-State, PDB code: 7au3:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 7au3

Go back to Copper Binding Sites List in 7au3
Copper binding site 1 out of 3 in the Cytochrome C Oxidase Structure in F-State


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cytochrome C Oxidase Structure in F-State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu604

b:12.0
occ:1.00
NE2 A:HIS325 2.1 4.5 1.0
NE2 A:HIS326 2.2 3.9 1.0
ND1 A:HIS276 2.3 3.8 1.0
CE1 A:HIS325 2.8 4.5 1.0
CE1 A:HIS276 2.9 3.8 1.0
O A:O606 3.0 5.0 1.0
CE1 A:HIS326 3.1 3.9 1.0
CD2 A:HIS326 3.2 3.9 1.0
CD2 A:HIS325 3.2 4.5 1.0
O1 A:2FK607 3.3 5.5 1.0
CG A:HIS276 3.4 3.8 1.0
O2 A:2FK607 3.9 5.5 1.0
CB A:HIS276 4.0 3.8 1.0
ND1 A:HIS325 4.0 4.5 1.0
NE2 A:HIS276 4.1 3.8 1.0
ND1 A:HIS326 4.1 3.9 1.0
NA A:HEA603 4.1 5.3 1.0
CG A:HIS326 4.2 3.9 1.0
CG A:HIS325 4.2 4.5 1.0
C1A A:HEA603 4.3 5.3 1.0
CD2 A:HIS276 4.4 3.8 1.0
C4A A:HEA603 4.5 5.3 1.0
FE A:HEA603 4.5 5.3 1.0
CA A:HIS276 4.5 3.8 1.0
O A:HOH787 4.5 5.4 1.0
ND A:HEA603 4.7 5.3 1.0
CHA A:HEA603 4.7 5.3 1.0
CG2 A:VAL279 4.7 3.8 1.0
C4D A:HEA603 4.7 5.3 1.0
C2A A:HEA603 4.8 5.3 1.0
C3A A:HEA603 4.8 5.3 1.0
NB A:HEA603 4.9 5.3 1.0
CHB A:HEA603 5.0 5.3 1.0

Copper binding site 2 out of 3 in 7au3

Go back to Copper Binding Sites List in 7au3
Copper binding site 2 out of 3 in the Cytochrome C Oxidase Structure in F-State


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cytochrome C Oxidase Structure in F-State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu301

b:15.4
occ:1.00
CU1 B:CUA301 0.0 15.4 1.0
ND1 B:HIS224 1.8 4.9 1.0
SG B:CYS220 2.6 5.1 1.0
CE1 B:HIS224 2.6 4.9 1.0
SG B:CYS216 2.6 5.0 1.0
O B:GLU218 2.7 5.2 1.0
CU2 B:CUA301 2.7 15.4 1.0
CG B:HIS224 3.0 4.9 1.0
CB B:CYS216 3.2 5.0 1.0
O B:HIS224 3.5 4.9 1.0
CA B:HIS224 3.5 4.9 1.0
CB B:HIS224 3.6 4.9 1.0
CB B:CYS220 3.6 5.1 1.0
C B:GLU218 3.7 5.2 1.0
NE2 B:HIS224 3.8 4.9 1.0
N B:CYS220 3.8 5.1 1.0
C B:HIS224 3.9 4.9 1.0
CD2 B:HIS224 4.0 4.9 1.0
C B:CYS216 4.1 5.0 1.0
O B:CYS216 4.1 5.0 1.0
CA B:CYS216 4.2 5.0 1.0
N B:GLU218 4.2 5.2 1.0
CA B:CYS220 4.3 5.1 1.0
SD B:MET227 4.3 4.6 1.0
C B:LEU219 4.4 5.0 1.0
CA B:LEU219 4.4 5.0 1.0
ND1 B:HIS181 4.5 4.6 1.0
N B:LEU219 4.5 5.0 1.0
CG B:MET227 4.6 4.6 1.0
N B:SER217 4.6 4.9 1.0
CA B:GLU218 4.6 5.2 1.0
N B:HIS224 4.9 4.9 1.0

Copper binding site 3 out of 3 in 7au3

Go back to Copper Binding Sites List in 7au3
Copper binding site 3 out of 3 in the Cytochrome C Oxidase Structure in F-State


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cytochrome C Oxidase Structure in F-State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu301

b:15.4
occ:1.00
CU2 B:CUA301 0.0 15.4 1.0
ND1 B:HIS181 2.0 4.6 1.0
SG B:CYS220 2.3 5.1 1.0
SD B:MET227 2.5 4.6 1.0
SG B:CYS216 2.6 5.0 1.0
CU1 B:CUA301 2.7 15.4 1.0
CE1 B:HIS181 2.8 4.6 1.0
CB B:CYS220 3.1 5.1 1.0
CG B:HIS181 3.2 4.6 1.0
CE B:MET227 3.3 4.6 1.0
CB B:HIS181 3.7 4.6 1.0
CB B:CYS216 3.7 5.0 1.0
CG B:MET227 3.8 4.6 1.0
NE2 B:HIS181 4.0 4.6 1.0
CD2 B:HIS181 4.2 4.6 1.0
CA B:HIS181 4.2 4.6 1.0
O B:GLU218 4.2 5.2 1.0
ND1 B:HIS224 4.4 4.9 1.0
CA B:CYS220 4.5 5.1 1.0
CD1 B:TRP121 4.7 4.3 1.0
N B:CYS220 4.8 5.1 1.0
CA B:HIS224 4.9 4.9 1.0
O B:HIS119 4.9 4.1 1.0
O B:ILE180 4.9 4.4 1.0
O B:HIS224 5.0 4.9 1.0

Reference:

F.Kolbe, S.Safarian, H.Michel. Cytochrome C Oxidase Structure in F-State To Be Published.
Page generated: Wed Jul 31 08:20:02 2024

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