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Copper in PDB 6xts: Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex

Enzymatic activity of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex

All present enzymatic activity of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex:
1.8.3.7;

Protein crystallography data

The structure of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex, PDB code: 6xts was solved by F.Leisinger, F.P.Seebeck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.36 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.104, 72.222, 76.886, 90, 90, 90
R / Rfree (%) 20 / 21.6

Other elements in 6xts:

The structure of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Calcium (Ca) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex (pdb code 6xts). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex, PDB code: 6xts:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6xts

Go back to Copper Binding Sites List in 6xts
Copper binding site 1 out of 2 in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu401

b:7.5
occ:0.67
 CU A:CU1401 0.0 7.5 0.7
CU A:CU1401 1.1 10.9 0.3
SG A:CYS274 1.8 11.4 0.3
SG C:CYS7 2.2 13.2 1.0
SG A:CYS274 2.3 10.3 0.7
SG A:CYS269 2.5 12.3 1.0
O2 A:OXY405 2.8 15.2 0.7
CB A:CYS274 3.1 10.7 0.3
CB A:CYS274 3.2 10.8 0.7
O1 A:OXY405 3.4 13.5 0.7
CB A:CYS269 3.4 12.3 1.0
CB C:CYS7 3.5 11.6 1.0
O A:HOH510 3.5 16.0 1.0
O A:CYS274 3.5 12.4 0.3
CA A:CYS269 3.8 9.8 1.0
CZ2 A:TRP228 3.8 8.9 1.0
CB A:ARG276 3.9 14.0 1.0
C A:CYS274 4.1 14.1 0.3
OH A:TYR273 4.2 13.5 0.3
CA A:CYS274 4.3 12.9 0.3
O A:HOH501 4.3 16.5 0.7
NE1 A:TRP228 4.3 9.9 1.0
CE2 A:TRP228 4.4 8.1 1.0
N A:CYS269 4.5 9.8 1.0
CZ A:TYR273 4.5 12.2 0.3
N A:ARG276 4.6 13.6 1.0
CA A:CYS274 4.6 11.4 0.7
CA C:CYS7 4.6 12.2 1.0
CE1 A:TYR273 4.7 13.3 0.3
CA A:ARG276 4.7 13.0 1.0
CG A:ARG276 4.7 12.6 1.0
CD A:ARG276 4.8 12.6 1.0
CH2 A:TRP228 4.8 9.3 1.0
NH1 A:ARG276 5.0 14.7 1.0

Copper binding site 2 out of 2 in 6xts

Go back to Copper Binding Sites List in 6xts
Copper binding site 2 out of 2 in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu401

b:10.9
occ:0.33
 CU A:CU1401 0.0 10.9 0.3
CU A:CU1401 1.1 7.5 0.7
SG A:CYS269 2.0 12.3 1.0
SG A:CYS274 2.0 11.4 0.3
SG A:CYS274 2.1 10.3 0.7
CB A:CYS269 2.8 12.3 1.0
O A:CYS274 2.9 12.4 0.3
SG C:CYS7 3.1 13.2 1.0
CB A:ARG276 3.3 14.0 1.0
CB A:CYS274 3.3 10.8 0.7
O2 A:OXY405 3.3 15.2 0.7
CB A:CYS274 3.4 10.7 0.3
CA A:CYS269 3.5 9.8 1.0
N A:ARG276 3.7 13.6 1.0
C A:CYS274 3.7 14.1 0.3
CA A:ARG276 3.8 13.0 1.0
CZ2 A:TRP228 3.9 8.9 1.0
C A:ARG276 4.1 16.2 1.0
O1 A:OXY405 4.1 13.5 0.7
CA A:CYS274 4.2 12.9 0.3
CG A:ARG276 4.3 12.6 1.0
CB C:CYS7 4.4 11.6 1.0
N A:CYS269 4.4 9.8 1.0
O A:ARG276 4.5 15.4 1.0
O A:HOH510 4.5 16.0 1.0
CA A:CYS274 4.6 11.4 0.7
C A:CYS269 4.6 10.6 1.0
CE2 A:TRP228 4.6 8.1 1.0
N A:TYR277 4.6 15.6 1.0
C A:CYS274 4.7 9.6 0.7
N A:HIS270 4.7 12.0 1.0
CH2 A:TRP228 4.7 9.3 1.0
CD A:ARG276 4.7 12.6 1.0
NE1 A:TRP228 4.7 9.9 1.0
CA A:GLY265 4.8 8.7 1.0
OH A:TYR273 4.8 13.5 0.3
N A:ASN275 4.9 16.7 1.0
C A:ASN275 4.9 12.4 1.0
O A:HOH501 4.9 16.5 0.7

Reference:

F.Leisinger, D.A.Miarzlou, F.P.Seebeck. Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme To Be Published.
Page generated: Wed Jul 31 07:51:11 2024

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