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Copper in PDB 6wis: Copper Resistance Protein Copg- Form 1

Protein crystallography data

The structure of Copper Resistance Protein Copg- Form 1, PDB code: 6wis was solved by A.C.Hausrath, A.Ly, M.M.Mcevoy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.06 / 2.00
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 86.130, 86.130, 58.560, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 22

Other elements in 6wis:

The structure of Copper Resistance Protein Copg- Form 1 also contains other interesting chemical elements:

Zinc (Zn) 15 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Copper Resistance Protein Copg- Form 1 (pdb code 6wis). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the Copper Resistance Protein Copg- Form 1, PDB code: 6wis:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in 6wis

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Copper binding site 1 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:23.2
occ:1.00
 SG A:CYS16 2.2 26.6 1.0
ND1 A:HIS55 2.2 23.7 1.0
SG A:CYS54 2.3 27.5 1.0
CU A:CU202 2.9 26.3 1.0
CG A:HIS55 3.0 21.0 1.0
CU A:CU203 3.1 29.6 1.0
CB A:CYS54 3.1 25.6 1.0
CB A:CYS16 3.1 26.4 1.0
CE1 A:HIS55 3.2 23.2 1.0
CB A:HIS55 3.2 22.5 1.0
C A:CYS54 3.3 26.5 1.0
N A:HIS55 3.4 22.1 1.0
CA A:CYS16 3.5 26.3 1.0
O A:CYS54 3.6 20.5 1.0
NE2 A:HIS67 3.7 21.1 1.0
CA A:CYS54 3.7 23.7 1.0
N A:CYS16 3.8 23.9 1.0
CA A:HIS55 3.9 21.3 1.0
CD2 A:HIS55 4.2 22.6 1.0
NE2 A:HIS55 4.3 23.5 1.0
SG A:CYS13 4.3 30.5 1.0
CE1 A:HIS67 4.3 26.9 1.0
N A:CYS54 4.3 24.1 1.0
SG A:CYS15 4.4 26.0 1.0
CD2 A:HIS67 4.4 20.6 1.0
C A:CYS15 4.7 23.7 1.0
C A:CYS16 4.9 26.0 1.0

Copper binding site 2 out of 8 in 6wis

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Copper binding site 2 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu202

b:26.3
occ:1.00
 NE2 A:HIS67 2.1 21.1 1.0
SG A:CYS15 2.3 26.0 1.0
SG A:CYS54 2.3 27.5 1.0
CU A:CU203 2.8 29.6 1.0
CU A:CU201 2.9 23.2 1.0
CE1 A:HIS67 3.0 26.9 1.0
CU A:CU204 3.1 32.0 1.0
CD2 A:HIS67 3.2 20.6 1.0
CB A:CYS15 3.2 22.3 1.0
CB A:CYS54 3.6 25.6 1.0
SE A:MSE90 3.6 32.9 0.8
N A:CYS16 3.7 23.9 1.0
SG A:CYS13 3.9 30.5 1.0
SG A:CYS16 3.9 26.6 1.0
CG A:MSE90 4.0 28.1 1.0
C A:CYS15 4.0 23.7 1.0
CA A:CYS15 4.1 28.5 1.0
ND1 A:HIS67 4.2 24.6 1.0
CG A:HIS67 4.3 22.9 1.0
CG A:MSE97 4.3 27.6 1.0
SE A:MSE97 4.4 31.3 0.8
ND1 A:HIS55 4.4 23.7 1.0
CA A:CYS16 4.4 26.3 1.0
O A:CYS15 4.6 28.9 1.0
CB A:MSE90 4.7 29.8 1.0
CE1 A:HIS55 4.8 23.2 1.0
N A:CYS15 4.8 23.9 1.0
CB A:CYS16 4.8 26.4 1.0
CA A:CYS54 4.9 23.7 1.0

Copper binding site 3 out of 8 in 6wis

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Copper binding site 3 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu203

b:29.6
occ:1.00
 N A:CYS16 2.1 23.9 1.0
SG A:CYS16 2.2 26.6 1.0
SG A:CYS13 2.3 30.5 1.0
SG A:CYS15 2.3 26.0 1.0
CU A:CU202 2.8 26.3 1.0
CB A:CYS16 2.9 26.4 1.0
CA A:CYS16 2.9 26.3 1.0
C A:CYS15 3.1 23.7 1.0
CU A:CU201 3.1 23.2 1.0
CB A:CYS13 3.2 29.7 1.0
N A:CYS15 3.3 23.9 1.0
CA A:CYS15 3.4 28.5 1.0
CB A:CYS15 3.4 22.3 1.0
O A:CYS13 3.6 31.9 1.0
C A:CYS13 3.6 30.3 1.0
CA A:CYS13 3.9 32.5 1.0
SG A:CYS54 4.0 27.5 1.0
C A:GLY14 4.1 26.2 1.0
N A:GLY14 4.1 34.5 1.0
O A:CYS15 4.1 28.9 1.0
CB A:CYS54 4.3 25.6 1.0
C A:CYS16 4.3 26.0 1.0
NE2 A:HIS67 4.4 21.1 1.0
CU A:CU204 4.5 32.0 1.0
N A:LYS17 4.6 26.2 1.0
CA A:GLY14 4.7 29.7 1.0
O A:GLY14 4.7 27.1 1.0
CE1 A:HIS67 4.7 26.9 1.0
ND1 A:HIS55 4.9 23.7 1.0

Copper binding site 4 out of 8 in 6wis

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Copper binding site 4 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu204

b:32.0
occ:1.00
 SG A:CYS15 2.3 26.0 1.0
SE A:MSE97 2.4 31.3 0.8
SE A:MSE90 2.4 32.9 0.8
SE B:MSE99 2.6 41.5 0.7
CU A:CU202 3.1 26.3 1.0
CB A:CYS15 3.3 22.3 1.0
CG B:MSE99 3.3 33.3 1.0
CE A:MSE90 3.5 30.2 1.0
CE B:MSE99 3.5 39.0 1.0
CG A:MSE90 3.5 28.1 1.0
CG A:MSE97 3.7 27.6 1.0
CB A:MSE90 3.7 29.8 1.0
CE A:MSE97 3.7 27.6 1.0
CB B:MSE99 4.1 35.8 1.0
NE2 A:HIS67 4.3 21.1 1.0
CU A:CU203 4.5 29.6 1.0
SG A:CYS13 4.5 30.5 1.0
CA A:CYS15 4.7 28.5 1.0
SG A:CYS54 4.7 27.5 1.0
N A:CYS15 4.9 23.9 1.0

Copper binding site 5 out of 8 in 6wis

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Copper binding site 5 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:26.2
occ:1.00
 ND1 B:HIS55 2.1 27.6 1.0
SG B:CYS16 2.2 27.7 1.0
SG B:CYS54 2.2 27.5 1.0
CU B:CU202 2.8 26.7 1.0
CG B:HIS55 3.0 26.3 1.0
CU B:CU203 3.1 31.3 1.0
CB B:CYS54 3.1 30.8 1.0
CE1 B:HIS55 3.2 30.2 1.0
CB B:CYS16 3.2 29.6 1.0
CB B:HIS55 3.2 19.2 1.0
C B:CYS54 3.3 32.0 1.0
N B:HIS55 3.3 24.0 1.0
CA B:CYS16 3.5 28.8 1.0
O B:CYS54 3.6 28.9 1.0
N B:CYS16 3.7 24.7 1.0
NE2 B:HIS67 3.8 28.3 1.0
CA B:CYS54 3.8 30.6 1.0
CA B:HIS55 3.9 24.7 1.0
CD2 B:HIS55 4.2 24.1 1.0
SG B:CYS13 4.2 29.8 1.0
NE2 B:HIS55 4.2 28.6 1.0
CE1 B:HIS67 4.3 27.7 1.0
N B:CYS54 4.4 28.9 1.0
CD2 B:HIS67 4.5 25.7 1.0
SG B:CYS15 4.5 30.1 1.0
C B:CYS15 4.6 27.2 1.0
C B:CYS16 4.9 31.9 1.0

Copper binding site 6 out of 8 in 6wis

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Copper binding site 6 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu202

b:26.7
occ:1.00
 NE2 B:HIS67 2.1 28.3 1.0
SG B:CYS54 2.2 27.5 1.0
SG B:CYS15 2.4 30.1 1.0
CU B:CU203 2.8 31.3 1.0
CU B:CU201 2.8 26.2 1.0
CE1 B:HIS67 3.0 27.7 1.0
CU B:CU204 3.1 33.3 1.0
CD2 B:HIS67 3.2 25.7 1.0
CB B:CYS15 3.2 24.3 1.0
CB B:CYS54 3.5 30.8 1.0
SE B:MSE90 3.6 34.1 0.7
N B:CYS16 3.7 24.7 1.0
SG B:CYS13 3.9 29.8 1.0
CG B:MSE90 3.9 32.8 1.0
C B:CYS15 3.9 27.2 1.0
SG B:CYS16 4.0 27.7 1.0
CA B:CYS15 4.1 25.4 1.0
ND1 B:HIS67 4.2 27.2 1.0
CG B:HIS67 4.3 26.9 1.0
ND1 B:HIS55 4.3 27.6 1.0
CA B:CYS16 4.4 28.8 1.0
SE B:MSE97 4.5 37.5 0.7
CG B:MSE97 4.6 34.4 1.0
O B:CYS15 4.6 28.0 1.0
CE1 B:HIS55 4.7 30.2 1.0
N B:CYS15 4.7 25.0 1.0
CB B:CYS16 4.9 29.6 1.0
CA B:CYS54 4.9 30.6 1.0

Copper binding site 7 out of 8 in 6wis

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Copper binding site 7 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu203

b:31.3
occ:1.00
 N B:CYS16 2.1 24.7 1.0
SG B:CYS13 2.3 29.8 1.0
SG B:CYS16 2.4 27.7 1.0
SG B:CYS15 2.4 30.1 1.0
CU B:CU202 2.8 26.7 1.0
CA B:CYS16 3.0 28.8 1.0
C B:CYS15 3.0 27.2 1.0
CB B:CYS16 3.0 29.6 1.0
CU B:CU201 3.1 26.2 1.0
N B:CYS15 3.1 25.0 1.0
CB B:CYS13 3.2 33.6 1.0
CA B:CYS15 3.3 25.4 1.0
CB B:CYS15 3.3 24.3 1.0
O B:CYS13 3.4 28.1 1.0
C B:CYS13 3.5 27.4 1.0
CA B:CYS13 3.9 30.9 1.0
SG B:CYS54 3.9 27.5 1.0
C B:GLY14 4.0 27.0 1.0
N B:GLY14 4.0 29.5 1.0
O B:CYS15 4.1 28.0 1.0
C B:CYS16 4.3 31.9 1.0
CB B:CYS54 4.4 30.8 1.0
NE2 B:HIS67 4.4 28.3 1.0
CU B:CU204 4.5 33.3 1.0
N B:LYS17 4.6 29.2 1.0
CA B:GLY14 4.6 29.4 1.0
CE1 B:HIS67 4.7 27.7 1.0
O B:GLY14 4.7 24.5 1.0
ND1 B:HIS55 4.9 27.6 1.0

Copper binding site 8 out of 8 in 6wis

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Copper binding site 8 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu204

b:33.3
occ:1.00
 SG B:CYS15 2.3 30.1 1.0
SE B:MSE90 2.4 34.1 0.7
SE B:MSE97 2.5 37.5 0.7
SE A:MSE99 2.6 36.4 0.7
CU B:CU202 3.1 26.7 1.0
CB B:CYS15 3.2 24.3 1.0
CG A:MSE99 3.3 30.6 1.0
CG B:MSE90 3.3 32.8 1.0
CE A:MSE99 3.5 35.8 1.0
CE B:MSE90 3.6 35.2 1.0
CE B:MSE97 3.7 25.8 1.0
CG B:MSE97 3.8 34.4 1.0
CB B:MSE90 3.8 33.8 1.0
CB A:MSE99 3.9 37.5 1.0
NE2 B:HIS67 4.2 28.3 1.0
CU B:CU203 4.5 31.3 1.0
SG B:CYS13 4.6 29.8 1.0
CA B:CYS15 4.7 25.4 1.0
SG B:CYS54 4.7 27.5 1.0
CE1 B:HIS67 4.9 27.7 1.0
CD2 B:HIS67 4.9 25.7 1.0
N B:CYS15 5.0 25.0 1.0

Reference:

A.C.Hausrath, N.A.Ramirez, A.T.Ly, M.M.Mcevoy. The Bacterial Copper-Resistance Protein Copg Contains A Cysteine-Bridged Tetranuclear Copper Cluster J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
Page generated: Wed Jul 31 07:44:39 2024

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