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Copper in PDB 6wcp: Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy)

Enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy)

All present enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy):
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy), PDB code: 6wcp was solved by R.Miranda-Blancas, E.Rudino-Pinera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.26 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.442, 60.838, 76.234, 90, 109.28, 90
R / Rfree (%) 19.8 / 24.5

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy) (pdb code 6wcp). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy), PDB code: 6wcp:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6wcp

Go back to Copper Binding Sites List in 6wcp
Copper binding site 1 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:20.3
occ:1.00
ND1 A:HIS97 2.0 14.1 1.0
NE2 A:HIS135 2.1 19.3 1.0
NE2 A:HIS446 2.2 18.0 1.0
CE1 A:HIS97 2.9 12.6 1.0
CD2 A:HIS135 3.0 19.8 1.0
CG A:HIS97 3.1 15.4 1.0
CE1 A:HIS446 3.1 18.1 1.0
CE1 A:HIS135 3.1 13.9 1.0
CD2 A:HIS446 3.2 19.3 1.0
CB A:HIS97 3.5 14.1 1.0
CZ2 A:TRP133 3.6 16.4 1.0
CD2 A:HIS95 3.7 16.2 1.0
CE2 A:TRP133 3.8 17.1 1.0
NE1 A:TRP133 3.9 14.4 1.0
NE2 A:HIS97 4.0 20.5 1.0
CD2 A:HIS97 4.1 16.4 1.0
CG A:HIS135 4.2 17.0 1.0
ND1 A:HIS135 4.2 16.4 1.0
NE2 A:HIS95 4.2 22.2 1.0
ND1 A:HIS446 4.2 12.9 1.0
CG A:HIS446 4.3 17.4 1.0
NE2 A:HIS396 4.4 15.8 1.0
CH2 A:TRP133 4.4 15.1 1.0
CD2 A:HIS396 4.4 15.3 1.0
CA A:HIS97 4.7 18.0 1.0
CD2 A:TRP133 4.8 18.1 1.0
CG A:HIS95 4.9 21.7 1.0
CD1 A:TRP133 4.9 17.3 1.0

Copper binding site 2 out of 2 in 6wcp

Go back to Copper Binding Sites List in 6wcp
Copper binding site 2 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu503

b:22.5
occ:1.00
ND1 A:HIS393 2.1 22.8 1.0
SG A:CYS445 2.2 20.3 1.0
ND1 A:HIS450 2.2 20.7 1.0
CE1 A:HIS393 3.0 22.2 1.0
CG A:HIS450 3.1 15.9 1.0
CG A:HIS393 3.1 17.8 1.0
CE1 A:HIS450 3.2 21.2 1.0
CB A:CYS445 3.2 30.1 1.0
CB A:HIS450 3.3 15.6 1.0
CB A:HIS393 3.5 18.7 1.0
SD A:MET455 3.8 35.4 1.0
CA A:HIS393 3.9 22.4 1.0
CB A:ILE447 4.0 13.5 1.0
CD1 A:ILE447 4.0 15.4 1.0
NE2 A:HIS393 4.1 17.9 1.0
CD2 A:HIS393 4.2 14.5 1.0
CD2 A:HIS450 4.3 21.6 1.0
NE2 A:HIS450 4.3 21.9 1.0
CG1 A:ILE447 4.4 18.4 1.0
CD A:PRO394 4.4 17.3 1.0
O A:ASP392 4.5 17.8 1.0
CE A:MET455 4.5 23.8 1.0
CA A:CYS445 4.6 29.8 1.0
CG2 A:ILE447 4.7 23.0 1.0
O A:ILE447 4.7 17.4 1.0
N A:ILE447 4.7 13.0 1.0
C A:HIS393 4.8 18.3 1.0
CA A:HIS450 4.9 12.1 1.0
CA A:ILE447 4.9 11.1 1.0
N A:PRO394 4.9 20.5 1.0
N A:HIS393 4.9 18.4 1.0

Reference:

R.Miranda-Blancas, E.Rudino-Pinera. Dynamic Behavior of Beta-Hairpin Loop at Laccase of Thermus Thermophilus at 1.7 Angstroms Resolution To Be Published.
Page generated: Mon Jul 14 07:24:40 2025

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