Atomistry » Copper » PDB 6vow-6xx3 » 6wcp
Atomistry »
  Copper »
    PDB 6vow-6xx3 »
      6wcp »

Copper in PDB 6wcp: Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy)

Enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy)

All present enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy):
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy), PDB code: 6wcp was solved by R.Miranda-Blancas, E.Rudino-Pinera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.26 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.442, 60.838, 76.234, 90, 109.28, 90
R / Rfree (%) 19.8 / 24.5

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy) (pdb code 6wcp). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy), PDB code: 6wcp:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6wcp

Go back to Copper Binding Sites List in 6wcp
Copper binding site 1 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:20.3
occ:1.00
ND1 A:HIS97 2.0 14.1 1.0
NE2 A:HIS135 2.1 19.3 1.0
NE2 A:HIS446 2.2 18.0 1.0
CE1 A:HIS97 2.9 12.6 1.0
CD2 A:HIS135 3.0 19.8 1.0
CG A:HIS97 3.1 15.4 1.0
CE1 A:HIS446 3.1 18.1 1.0
CE1 A:HIS135 3.1 13.9 1.0
CD2 A:HIS446 3.2 19.3 1.0
CB A:HIS97 3.5 14.1 1.0
CZ2 A:TRP133 3.6 16.4 1.0
CD2 A:HIS95 3.7 16.2 1.0
CE2 A:TRP133 3.8 17.1 1.0
NE1 A:TRP133 3.9 14.4 1.0
NE2 A:HIS97 4.0 20.5 1.0
CD2 A:HIS97 4.1 16.4 1.0
CG A:HIS135 4.2 17.0 1.0
ND1 A:HIS135 4.2 16.4 1.0
NE2 A:HIS95 4.2 22.2 1.0
ND1 A:HIS446 4.2 12.9 1.0
CG A:HIS446 4.3 17.4 1.0
NE2 A:HIS396 4.4 15.8 1.0
CH2 A:TRP133 4.4 15.1 1.0
CD2 A:HIS396 4.4 15.3 1.0
CA A:HIS97 4.7 18.0 1.0
CD2 A:TRP133 4.8 18.1 1.0
CG A:HIS95 4.9 21.7 1.0
CD1 A:TRP133 4.9 17.3 1.0

Copper binding site 2 out of 2 in 6wcp

Go back to Copper Binding Sites List in 6wcp
Copper binding site 2 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 20.67 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu503

b:22.5
occ:1.00
ND1 A:HIS393 2.1 22.8 1.0
SG A:CYS445 2.2 20.3 1.0
ND1 A:HIS450 2.2 20.7 1.0
CE1 A:HIS393 3.0 22.2 1.0
CG A:HIS450 3.1 15.9 1.0
CG A:HIS393 3.1 17.8 1.0
CE1 A:HIS450 3.2 21.2 1.0
CB A:CYS445 3.2 30.1 1.0
CB A:HIS450 3.3 15.6 1.0
CB A:HIS393 3.5 18.7 1.0
SD A:MET455 3.8 35.4 1.0
CA A:HIS393 3.9 22.4 1.0
CB A:ILE447 4.0 13.5 1.0
CD1 A:ILE447 4.0 15.4 1.0
NE2 A:HIS393 4.1 17.9 1.0
CD2 A:HIS393 4.2 14.5 1.0
CD2 A:HIS450 4.3 21.6 1.0
NE2 A:HIS450 4.3 21.9 1.0
CG1 A:ILE447 4.4 18.4 1.0
CD A:PRO394 4.4 17.3 1.0
O A:ASP392 4.5 17.8 1.0
CE A:MET455 4.5 23.8 1.0
CA A:CYS445 4.6 29.8 1.0
CG2 A:ILE447 4.7 23.0 1.0
O A:ILE447 4.7 17.4 1.0
N A:ILE447 4.7 13.0 1.0
C A:HIS393 4.8 18.3 1.0
CA A:HIS450 4.9 12.1 1.0
CA A:ILE447 4.9 11.1 1.0
N A:PRO394 4.9 20.5 1.0
N A:HIS393 4.9 18.4 1.0

Reference:

R.Miranda-Blancas, E.Rudino-Pinera. Dynamic Behavior of Beta-Hairpin Loop at Laccase of Thermus Thermophilus at 1.7 Angstroms Resolution To Be Published.
Page generated: Wed Jul 31 07:44:38 2024

Last articles

Br in 1JID
Br in 1J9H
Br in 1J6S
Br in 1IJV
Br in 1IZ8
Br in 1IMX
Br in 1IHR
Br in 1IHA
Br in 1IK5
Br in 1IJW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy