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Copper in PDB 6wcm: Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 15.50 Mgy)

Enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 15.50 Mgy)

All present enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 15.50 Mgy):
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 15.50 Mgy), PDB code: 6wcm was solved by R.Miranda-Blancas, E.Rudino-Pinera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.24 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.436, 60.817, 76.235, 90, 109.34, 90
R / Rfree (%) 19.7 / 23.8

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 15.50 Mgy) (pdb code 6wcm). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 15.50 Mgy), PDB code: 6wcm:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6wcm

Go back to Copper Binding Sites List in 6wcm
Copper binding site 1 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 15.50 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 15.50 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:12.4
occ:0.81
ND1 A:HIS97 2.0 15.2 1.0
NE2 A:HIS135 2.1 17.0 1.0
NE2 A:HIS446 2.1 16.4 1.0
CE1 A:HIS97 2.9 12.4 1.0
CD2 A:HIS135 2.9 14.8 1.0
CG A:HIS97 3.0 12.5 1.0
CE1 A:HIS446 3.1 14.7 1.0
CE1 A:HIS135 3.1 12.1 1.0
CD2 A:HIS446 3.1 15.9 1.0
CB A:HIS97 3.4 11.4 1.0
CZ2 A:TRP133 3.5 16.7 1.0
CD2 A:HIS95 3.7 15.5 1.0
CE2 A:TRP133 3.8 16.4 1.0
NE1 A:TRP133 3.9 11.2 1.0
NE2 A:HIS97 4.0 16.9 1.0
CG A:HIS135 4.1 16.9 1.0
CD2 A:HIS97 4.1 13.6 1.0
NE2 A:HIS95 4.2 18.7 1.0
ND1 A:HIS135 4.2 14.7 1.0
O A:HOH630 4.2 32.2 1.0
ND1 A:HIS446 4.2 13.0 1.0
CG A:HIS446 4.3 14.2 1.0
CH2 A:TRP133 4.3 15.0 1.0
NE2 A:HIS396 4.3 15.2 1.0
CD2 A:HIS396 4.4 12.6 1.0
CA A:HIS97 4.7 15.2 1.0
CD2 A:TRP133 4.7 14.6 1.0
CD1 A:TRP133 4.8 12.3 1.0
CG A:HIS95 4.9 19.3 1.0

Copper binding site 2 out of 2 in 6wcm

Go back to Copper Binding Sites List in 6wcm
Copper binding site 2 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 15.50 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 15.50 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:15.3
occ:0.87
ND1 A:HIS393 2.1 21.4 1.0
SG A:CYS445 2.1 18.9 1.0
ND1 A:HIS450 2.2 17.2 1.0
CE1 A:HIS393 3.0 19.6 1.0
CG A:HIS450 3.1 12.9 1.0
CG A:HIS393 3.1 15.4 1.0
CE1 A:HIS450 3.2 18.7 1.0
CB A:CYS445 3.2 22.4 1.0
CB A:HIS450 3.3 14.0 1.0
CB A:HIS393 3.5 14.0 1.0
SD A:MET455 3.8 29.5 1.0
CA A:HIS393 3.9 17.4 1.0
CB A:ILE447 3.9 14.1 1.0
CD1 A:ILE447 4.0 15.0 1.0
NE2 A:HIS393 4.1 16.9 1.0
CD2 A:HIS393 4.2 15.8 1.0
CD2 A:HIS450 4.3 14.1 1.0
NE2 A:HIS450 4.3 17.5 1.0
CG1 A:ILE447 4.3 18.2 1.0
CD A:PRO394 4.4 14.2 1.0
O A:ASP392 4.5 15.2 1.0
CE A:MET455 4.6 23.6 1.0
CA A:CYS445 4.6 23.6 1.0
O A:ILE447 4.7 14.4 1.0
N A:ILE447 4.7 11.1 1.0
CG2 A:ILE447 4.8 20.2 1.0
CA A:ILE447 4.8 10.8 1.0
C A:HIS393 4.8 17.0 1.0
CA A:HIS450 4.9 10.3 1.0
N A:PRO394 4.9 17.3 1.0
N A:HIS393 5.0 14.0 1.0

Reference:

R.Miranda-Blancas, E.Rudino-Pinera. Dynamic Behavior of Beta-Hairpin Loop at Laccase of Thermus Thermophilus at 1.7 Angstroms Resolution To Be Published.
Page generated: Wed Jul 31 07:42:59 2024

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