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Copper in PDB 6wch: Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 7.75 Mgy)

Enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 7.75 Mgy)

All present enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 7.75 Mgy):
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 7.75 Mgy), PDB code: 6wch was solved by R.Miranda-Blancas, E.Rudino-Pinera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.23 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.48, 60.84, 76.1, 90, 109.42, 90
R / Rfree (%) 19.6 / 23.6

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 7.75 Mgy) (pdb code 6wch). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 7.75 Mgy), PDB code: 6wch:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6wch

Go back to Copper Binding Sites List in 6wch
Copper binding site 1 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 7.75 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 7.75 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:12.0
occ:1.00
 ND1 A:HIS97 1.9 9.7 1.0
NE2 A:HIS135 2.1 14.0 1.0
NE2 A:HIS446 2.1 9.2 1.0
O A:HOH871 2.7 31.1 1.0
CE1 A:HIS97 2.8 8.8 1.0
CE1 A:HIS446 3.0 10.7 1.0
CG A:HIS97 3.0 6.6 1.0
CD2 A:HIS135 3.0 10.2 1.0
CE1 A:HIS135 3.1 10.0 1.0
CD2 A:HIS446 3.2 9.0 1.0
CB A:HIS97 3.4 8.4 1.0
CZ2 A:TRP133 3.5 12.7 1.0
CD2 A:HIS95 3.6 9.8 1.0
CE2 A:TRP133 3.8 8.7 1.0
NE1 A:TRP133 3.9 9.1 1.0
NE2 A:HIS97 3.9 11.1 1.0
CD2 A:HIS97 4.1 11.4 1.0
ND1 A:HIS446 4.1 7.6 1.0
ND1 A:HIS135 4.2 9.7 1.0
CG A:HIS135 4.2 10.8 1.0
CH2 A:TRP133 4.2 11.2 1.0
NE2 A:HIS95 4.3 11.4 1.0
CG A:HIS446 4.3 8.9 1.0
NE2 A:HIS396 4.3 10.7 1.0
CD2 A:HIS396 4.4 8.7 1.0
CA A:HIS97 4.7 8.3 1.0
CD2 A:TRP133 4.7 13.2 1.0
CG A:HIS95 4.8 15.3 1.0
CD1 A:TRP133 4.9 8.2 1.0

Copper binding site 2 out of 2 in 6wch

Go back to Copper Binding Sites List in 6wch
Copper binding site 2 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 7.75 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 7.75 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu503

b:14.6
occ:1.00
 ND1 A:HIS393 2.0 12.0 1.0
SG A:CYS445 2.1 12.3 1.0
ND1 A:HIS450 2.2 12.1 1.0
CE1 A:HIS393 2.9 10.6 1.0
CG A:HIS393 3.1 10.7 1.0
CG A:HIS450 3.1 7.1 1.0
CE1 A:HIS450 3.2 10.5 1.0
CB A:CYS445 3.2 16.6 1.0
CB A:HIS450 3.4 11.5 1.0
CB A:HIS393 3.5 8.6 1.0
SD A:MET455 3.8 22.5 1.0
CA A:HIS393 3.9 11.7 1.0
CB A:ILE447 4.0 10.9 1.0
CD1 A:ILE447 4.0 7.8 1.0
NE2 A:HIS393 4.1 10.0 1.0
CD2 A:HIS393 4.2 8.9 1.0
NE2 A:HIS450 4.3 9.1 1.0
CD2 A:HIS450 4.3 8.4 1.0
CG1 A:ILE447 4.4 10.7 1.0
CD A:PRO394 4.4 7.2 1.0
O A:ASP392 4.4 10.1 1.0
CE A:MET455 4.6 15.6 1.0
CA A:CYS445 4.6 11.3 1.0
O A:ILE447 4.7 11.8 1.0
N A:ILE447 4.7 6.2 1.0
CG2 A:ILE447 4.8 15.7 1.0
CA A:ILE447 4.9 6.4 1.0
C A:HIS393 4.9 13.1 1.0
CA A:HIS450 4.9 7.3 1.0
N A:HIS393 5.0 8.7 1.0
N A:PRO394 5.0 11.9 1.0

Reference:

R.Miranda-Blancas, E.Rudino-Pinera. Dynamic Behavior of Beta-Hairpin Loop at Laccase of Thermus Thermophilus at 1.7 Angstroms Resolution. To Be Published.
Page generated: Wed Jul 31 07:42:59 2024

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