Atomistry » Copper » PDB 6vow-6xx3 » 6w9x
Atomistry »
  Copper »
    PDB 6vow-6xx3 »
      6w9x »

Copper in PDB 6w9x: Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy)

Enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy)

All present enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy):
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy), PDB code: 6w9x was solved by R.Miranda-Blancas, E.Rudino-Pinera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.24 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.521, 60.757, 76.338, 90, 109.52, 90
R / Rfree (%) 19.8 / 24.7

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy) (pdb code 6w9x). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy), PDB code: 6w9x:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6w9x

Go back to Copper Binding Sites List in 6w9x
Copper binding site 1 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:11.5
occ:1.00
 ND1 A:HIS97 1.9 9.6 1.0
NE2 A:HIS135 2.0 8.8 1.0
NE2 A:HIS446 2.2 11.1 1.0
CE1 A:HIS97 2.8 7.2 1.0
CD2 A:HIS135 2.9 10.8 1.0
CG A:HIS97 3.0 7.6 1.0
CE1 A:HIS135 3.1 10.6 1.0
CE1 A:HIS446 3.1 7.1 1.0
CD2 A:HIS446 3.2 11.0 1.0
CZ2 A:TRP133 3.5 13.2 1.0
CB A:HIS97 3.5 7.5 1.0
CD2 A:HIS95 3.7 12.4 1.0
CE2 A:TRP133 3.7 9.0 1.0
NE1 A:TRP133 3.9 10.7 1.0
NE2 A:HIS97 4.0 11.2 1.0
CG A:HIS135 4.1 14.2 1.0
CD2 A:HIS97 4.1 9.7 1.0
ND1 A:HIS135 4.1 13.9 1.0
O A:HOH654 4.1 22.1 1.0
ND1 A:HIS446 4.2 8.6 1.0
CH2 A:TRP133 4.2 9.7 1.0
NE2 A:HIS95 4.3 12.3 1.0
CG A:HIS446 4.3 10.4 1.0
NE2 A:HIS396 4.3 10.7 1.0
CD2 A:HIS396 4.4 9.0 1.0
CA A:HIS97 4.7 8.9 1.0
CD2 A:TRP133 4.7 11.2 1.0
CG A:HIS95 4.8 15.7 1.0
CD1 A:TRP133 4.9 6.7 1.0

Copper binding site 2 out of 2 in 6w9x

Go back to Copper Binding Sites List in 6w9x
Copper binding site 2 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:14.1
occ:1.00
 ND1 A:HIS393 2.0 12.7 1.0
SG A:CYS445 2.1 11.8 1.0
ND1 A:HIS450 2.1 13.0 1.0
CE1 A:HIS393 2.9 14.5 1.0
CG A:HIS393 3.1 12.6 1.0
CG A:HIS450 3.1 9.7 1.0
CE1 A:HIS450 3.1 10.9 1.0
CB A:CYS445 3.2 13.2 1.0
CB A:HIS450 3.4 12.2 1.0
CB A:HIS393 3.5 8.3 1.0
SD A:MET455 3.8 18.7 1.0
CA A:HIS393 3.9 15.2 1.0
CB A:ILE447 3.9 11.2 1.0
CD1 A:ILE447 4.0 10.3 1.0
NE2 A:HIS393 4.1 10.2 1.0
CD2 A:HIS393 4.2 6.7 1.0
NE2 A:HIS450 4.2 12.0 1.0
CD2 A:HIS450 4.2 8.4 1.0
CG1 A:ILE447 4.3 13.8 1.0
O A:ASP392 4.4 10.8 1.0
CD A:PRO394 4.4 8.5 1.0
CE A:MET455 4.6 13.8 1.0
CA A:CYS445 4.6 15.0 1.0
N A:ILE447 4.7 6.2 1.0
O A:ILE447 4.7 11.1 1.0
CG2 A:ILE447 4.8 14.8 1.0
CA A:ILE447 4.8 8.6 1.0
C A:HIS393 4.8 15.5 1.0
N A:PRO394 4.9 14.5 1.0
CA A:HIS450 4.9 7.1 1.0
N A:HIS393 4.9 11.1 1.0

Reference:

R.Miranda-Blancas, E.Rudino-Pinera. Dynamic Behavior of Alpha-Hairpin Loop at Laccase of Thermus Thermophilus at 1.7 Angstroms Resolution. To Be Published.
Page generated: Wed Jul 31 07:42:59 2024

Last articles

Br in 1N8V
Br in 1N7B
Br in 1N7A
Br in 1N8U
Br in 1N1G
Br in 1MY3
Br in 1MXU
Br in 1N11
Br in 1N0R
Br in 1M9T
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy