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Copper in PDB 6w9x: Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy)

Enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy)

All present enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy):
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy), PDB code: 6w9x was solved by R.Miranda-Blancas, E.Rudino-Pinera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.24 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.521, 60.757, 76.338, 90, 109.52, 90
R / Rfree (%) 19.8 / 24.7

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy) (pdb code 6w9x). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy), PDB code: 6w9x:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6w9x

Go back to Copper Binding Sites List in 6w9x
Copper binding site 1 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:11.5
occ:1.00
 ND1 A:HIS97 1.9 9.6 1.0
NE2 A:HIS135 2.0 8.8 1.0
NE2 A:HIS446 2.2 11.1 1.0
CE1 A:HIS97 2.8 7.2 1.0
CD2 A:HIS135 2.9 10.8 1.0
CG A:HIS97 3.0 7.6 1.0
CE1 A:HIS135 3.1 10.6 1.0
CE1 A:HIS446 3.1 7.1 1.0
CD2 A:HIS446 3.2 11.0 1.0
CZ2 A:TRP133 3.5 13.2 1.0
CB A:HIS97 3.5 7.5 1.0
CD2 A:HIS95 3.7 12.4 1.0
CE2 A:TRP133 3.7 9.0 1.0
NE1 A:TRP133 3.9 10.7 1.0
NE2 A:HIS97 4.0 11.2 1.0
CG A:HIS135 4.1 14.2 1.0
CD2 A:HIS97 4.1 9.7 1.0
ND1 A:HIS135 4.1 13.9 1.0
O A:HOH654 4.1 22.1 1.0
ND1 A:HIS446 4.2 8.6 1.0
CH2 A:TRP133 4.2 9.7 1.0
NE2 A:HIS95 4.3 12.3 1.0
CG A:HIS446 4.3 10.4 1.0
NE2 A:HIS396 4.3 10.7 1.0
CD2 A:HIS396 4.4 9.0 1.0
CA A:HIS97 4.7 8.9 1.0
CD2 A:TRP133 4.7 11.2 1.0
CG A:HIS95 4.8 15.7 1.0
CD1 A:TRP133 4.9 6.7 1.0

Copper binding site 2 out of 2 in 6w9x

Go back to Copper Binding Sites List in 6w9x
Copper binding site 2 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposited Dose 5.1 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:14.1
occ:1.00
 ND1 A:HIS393 2.0 12.7 1.0
SG A:CYS445 2.1 11.8 1.0
ND1 A:HIS450 2.1 13.0 1.0
CE1 A:HIS393 2.9 14.5 1.0
CG A:HIS393 3.1 12.6 1.0
CG A:HIS450 3.1 9.7 1.0
CE1 A:HIS450 3.1 10.9 1.0
CB A:CYS445 3.2 13.2 1.0
CB A:HIS450 3.4 12.2 1.0
CB A:HIS393 3.5 8.3 1.0
SD A:MET455 3.8 18.7 1.0
CA A:HIS393 3.9 15.2 1.0
CB A:ILE447 3.9 11.2 1.0
CD1 A:ILE447 4.0 10.3 1.0
NE2 A:HIS393 4.1 10.2 1.0
CD2 A:HIS393 4.2 6.7 1.0
NE2 A:HIS450 4.2 12.0 1.0
CD2 A:HIS450 4.2 8.4 1.0
CG1 A:ILE447 4.3 13.8 1.0
O A:ASP392 4.4 10.8 1.0
CD A:PRO394 4.4 8.5 1.0
CE A:MET455 4.6 13.8 1.0
CA A:CYS445 4.6 15.0 1.0
N A:ILE447 4.7 6.2 1.0
O A:ILE447 4.7 11.1 1.0
CG2 A:ILE447 4.8 14.8 1.0
CA A:ILE447 4.8 8.6 1.0
C A:HIS393 4.8 15.5 1.0
N A:PRO394 4.9 14.5 1.0
CA A:HIS450 4.9 7.1 1.0
N A:HIS393 4.9 11.1 1.0

Reference:

R.Miranda-Blancas, E.Rudino-Pinera. Dynamic Behavior of Alpha-Hairpin Loop at Laccase of Thermus Thermophilus at 1.7 Angstroms Resolution. To Be Published.
Page generated: Mon Jul 14 07:23:10 2025

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