Copper in PDB 6vbs: The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit.
Enzymatic activity of The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit.
All present enzymatic activity of The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit.:
1.15.1.1;
Protein crystallography data
The structure of The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit., PDB code: 6vbs
was solved by
K.A.Satyshur,
K.T.Forest,
P.W.Newhouse,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
35.88 /
1.70
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
152.838,
69.474,
95.288,
90,
116.89,
90
|
|
R / Rfree (%)
|
17.9 /
21.9
|
Other elements in 6vbs:
The structure of The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit. also contains other interesting chemical elements:
Copper Binding Sites:
The binding sites of Copper atom in the The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit.
(pdb code 6vbs). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the
The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit., PDB code: 6vbs:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
Copper binding site 1 out
of 6 in 6vbs
Go back to
Copper Binding Sites List in 6vbs
Copper binding site 1 out
of 6 in the The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit.
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu201
b:35.2
occ:1.00
|
NE2
|
A:HIS130
|
1.9
|
19.6
|
1.0
|
|
ND1
|
A:HIS49
|
2.1
|
18.0
|
1.0
|
|
NE2
|
A:HIS51
|
2.1
|
15.1
|
1.0
|
|
HE2
|
A:HIS74
|
2.6
|
24.5
|
1.0
|
|
HB2
|
A:HIS49
|
2.7
|
19.8
|
1.0
|
|
CD2
|
A:HIS130
|
2.9
|
18.3
|
1.0
|
|
CE1
|
A:HIS130
|
2.9
|
20.1
|
1.0
|
|
CE1
|
A:HIS51
|
3.0
|
19.7
|
1.0
|
|
CG
|
A:HIS49
|
3.0
|
18.6
|
1.0
|
|
NE2
|
A:HIS74
|
3.1
|
20.5
|
1.0
|
|
HD2
|
A:HIS130
|
3.1
|
21.9
|
1.0
|
|
HB3
|
A:MET128
|
3.1
|
18.4
|
1.0
|
|
CE1
|
A:HIS49
|
3.1
|
17.7
|
1.0
|
|
HE1
|
A:HIS51
|
3.1
|
23.7
|
1.0
|
|
CD2
|
A:HIS51
|
3.1
|
17.9
|
1.0
|
|
HE1
|
A:HIS130
|
3.2
|
24.1
|
1.0
|
|
CB
|
A:HIS49
|
3.3
|
16.5
|
1.0
|
|
HE1
|
A:HIS49
|
3.3
|
21.2
|
1.0
|
|
HD2
|
A:HIS51
|
3.4
|
21.4
|
1.0
|
|
HD2
|
A:HIS74
|
3.4
|
24.6
|
1.0
|
|
HG2
|
A:MET128
|
3.4
|
21.9
|
1.0
|
|
CD2
|
A:HIS74
|
3.5
|
20.6
|
1.0
|
|
CB
|
A:MET128
|
3.9
|
15.4
|
1.0
|
|
HB3
|
A:HIS49
|
3.9
|
19.8
|
1.0
|
|
O
|
A:HOH413
|
4.0
|
25.1
|
1.0
|
|
CE1
|
A:HIS74
|
4.0
|
18.4
|
1.0
|
|
ND1
|
A:HIS130
|
4.0
|
17.0
|
1.0
|
|
CG
|
A:HIS130
|
4.0
|
18.9
|
1.0
|
|
CG
|
A:MET128
|
4.0
|
18.2
|
1.0
|
|
H
|
A:HIS49
|
4.1
|
14.5
|
1.0
|
|
ND1
|
A:HIS51
|
4.1
|
12.5
|
1.0
|
|
CD2
|
A:HIS49
|
4.1
|
18.8
|
1.0
|
|
NE2
|
A:HIS49
|
4.2
|
14.8
|
1.0
|
|
HB2
|
A:MET128
|
4.2
|
18.4
|
1.0
|
|
CG
|
A:HIS51
|
4.2
|
16.3
|
1.0
|
|
HG3
|
A:MET128
|
4.3
|
21.9
|
1.0
|
|
O
|
A:HOH368
|
4.3
|
19.5
|
1.0
|
|
CA
|
A:HIS49
|
4.3
|
14.5
|
1.0
|
|
HE1
|
A:HIS74
|
4.3
|
22.0
|
1.0
|
|
N
|
A:HIS49
|
4.3
|
12.1
|
1.0
|
|
CG
|
A:HIS74
|
4.5
|
16.4
|
1.0
|
|
O
|
A:HIS49
|
4.8
|
10.4
|
1.0
|
|
O
|
A:MET128
|
4.8
|
9.8
|
1.0
|
|
ND1
|
A:HIS74
|
4.8
|
15.1
|
1.0
|
|
C
|
A:HIS49
|
4.8
|
13.0
|
1.0
|
|
HD1
|
A:HIS130
|
4.8
|
20.4
|
1.0
|
|
HG2
|
A:ARG149
|
4.9
|
21.3
|
1.0
|
|
HD1
|
A:HIS51
|
4.9
|
15.0
|
1.0
|
|
HE2
|
A:HIS49
|
4.9
|
17.7
|
1.0
|
|
HD2
|
A:HIS49
|
5.0
|
22.6
|
1.0
|
|
Copper binding site 2 out
of 6 in 6vbs
Go back to
Copper Binding Sites List in 6vbs
Copper binding site 2 out
of 6 in the The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit.
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu202
b:40.0
occ:1.00
|
NE2
|
B:HIS130
|
2.0
|
17.0
|
1.0
|
|
ND1
|
B:HIS49
|
2.0
|
14.6
|
1.0
|
|
NE2
|
B:HIS51
|
2.1
|
16.5
|
1.0
|
|
HB2
|
B:HIS49
|
2.6
|
22.2
|
1.0
|
|
HE2
|
B:HIS74
|
2.8
|
20.2
|
1.0
|
|
CE1
|
B:HIS51
|
2.9
|
19.4
|
1.0
|
|
CE1
|
B:HIS130
|
2.9
|
19.8
|
1.0
|
|
CG
|
B:HIS49
|
2.9
|
16.2
|
1.0
|
|
HE1
|
B:HIS51
|
3.0
|
23.3
|
1.0
|
|
CD2
|
B:HIS130
|
3.0
|
17.2
|
1.0
|
|
CE1
|
B:HIS49
|
3.0
|
16.8
|
1.0
|
|
HE1
|
B:HIS130
|
3.1
|
23.7
|
1.0
|
|
HB3
|
B:MET128
|
3.1
|
19.0
|
1.0
|
|
NE2
|
B:HIS74
|
3.2
|
16.9
|
1.0
|
|
CB
|
B:HIS49
|
3.2
|
18.5
|
1.0
|
|
HD2
|
B:HIS130
|
3.2
|
20.7
|
1.0
|
|
CD2
|
B:HIS51
|
3.2
|
17.8
|
1.0
|
|
HE1
|
B:HIS49
|
3.3
|
20.1
|
1.0
|
|
HD2
|
B:HIS74
|
3.4
|
22.5
|
1.0
|
|
CD2
|
B:HIS74
|
3.5
|
18.8
|
1.0
|
|
HG2
|
B:MET128
|
3.5
|
22.9
|
1.0
|
|
HD2
|
B:HIS51
|
3.5
|
21.3
|
1.0
|
|
O
|
B:HOH417
|
3.8
|
19.4
|
1.0
|
|
HB3
|
B:HIS49
|
3.8
|
22.2
|
1.0
|
|
CB
|
B:MET128
|
3.9
|
15.8
|
1.0
|
|
ND1
|
B:HIS130
|
4.0
|
17.5
|
1.0
|
|
CG
|
B:HIS130
|
4.1
|
16.3
|
1.0
|
|
ND1
|
B:HIS51
|
4.1
|
13.6
|
1.0
|
|
CD2
|
B:HIS49
|
4.1
|
17.9
|
1.0
|
|
CE1
|
B:HIS74
|
4.1
|
17.1
|
1.0
|
|
NE2
|
B:HIS49
|
4.1
|
14.4
|
1.0
|
|
CG
|
B:MET128
|
4.1
|
19.1
|
1.0
|
|
H
|
B:HIS49
|
4.1
|
14.0
|
1.0
|
|
O
|
B:HOH408
|
4.1
|
16.8
|
1.0
|
|
HB2
|
B:MET128
|
4.2
|
19.0
|
1.0
|
|
CG
|
B:HIS51
|
4.3
|
17.4
|
1.0
|
|
CA
|
B:HIS49
|
4.3
|
15.4
|
1.0
|
|
N
|
B:HIS49
|
4.3
|
11.7
|
1.0
|
|
HG3
|
B:MET128
|
4.4
|
22.9
|
1.0
|
|
HE1
|
B:HIS74
|
4.5
|
20.5
|
1.0
|
|
CG
|
B:HIS74
|
4.5
|
16.9
|
1.0
|
|
HD1
|
B:HIS130
|
4.8
|
21.0
|
1.0
|
|
O
|
B:HIS49
|
4.8
|
11.4
|
1.0
|
|
C
|
B:HIS49
|
4.8
|
13.9
|
1.0
|
|
O
|
B:MET128
|
4.8
|
12.5
|
1.0
|
|
HD1
|
B:HIS51
|
4.8
|
16.3
|
1.0
|
|
ND1
|
B:HIS74
|
4.8
|
12.2
|
1.0
|
|
HE2
|
B:HIS49
|
4.9
|
17.2
|
1.0
|
|
HD2
|
B:HIS49
|
4.9
|
21.5
|
1.0
|
|
HG2
|
B:ARG149
|
4.9
|
19.3
|
1.0
|
|
Copper binding site 3 out
of 6 in 6vbs
Go back to
Copper Binding Sites List in 6vbs
Copper binding site 3 out
of 6 in the The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit.
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu202
b:39.2
occ:1.00
|
ND1
|
C:HIS49
|
2.2
|
15.9
|
1.0
|
|
NE2
|
C:HIS51
|
2.3
|
14.6
|
1.0
|
|
HB2
|
C:HIS49
|
2.7
|
20.9
|
1.0
|
|
HB3
|
C:MET128
|
2.9
|
22.9
|
1.0
|
|
HE2
|
C:HIS74
|
2.9
|
18.9
|
1.0
|
|
NE2
|
C:HIS130
|
3.1
|
17.1
|
1.0
|
|
CG
|
C:HIS49
|
3.1
|
17.5
|
1.0
|
|
HD2
|
C:HIS130
|
3.1
|
29.7
|
1.0
|
|
CE1
|
C:HIS51
|
3.2
|
18.5
|
1.0
|
|
CE1
|
C:HIS49
|
3.2
|
20.9
|
1.0
|
|
O
|
C:HOH345
|
3.2
|
27.2
|
1.0
|
|
HE1
|
C:HIS51
|
3.3
|
22.2
|
1.0
|
|
HG2
|
C:MET128
|
3.3
|
30.4
|
1.0
|
|
NE2
|
C:HIS74
|
3.3
|
15.7
|
1.0
|
|
CB
|
C:HIS49
|
3.3
|
17.4
|
1.0
|
|
CD2
|
C:HIS51
|
3.3
|
17.8
|
1.0
|
|
HE1
|
C:HIS49
|
3.4
|
25.1
|
1.0
|
|
CD2
|
C:HIS130
|
3.4
|
24.8
|
1.0
|
|
HD2
|
C:HIS51
|
3.5
|
21.4
|
1.0
|
|
HD2
|
C:HIS74
|
3.6
|
23.0
|
1.0
|
|
CD2
|
C:HIS74
|
3.7
|
19.2
|
1.0
|
|
CB
|
C:MET128
|
3.7
|
19.1
|
1.0
|
|
CG
|
C:MET128
|
3.9
|
25.3
|
1.0
|
|
H
|
C:HIS49
|
4.0
|
14.8
|
1.0
|
|
HB3
|
C:HIS49
|
4.0
|
20.9
|
1.0
|
|
HB2
|
C:MET128
|
4.1
|
22.9
|
1.0
|
|
CE1
|
C:HIS74
|
4.2
|
19.7
|
1.0
|
|
CD2
|
C:HIS49
|
4.2
|
20.4
|
1.0
|
|
NE2
|
C:HIS49
|
4.3
|
16.8
|
1.0
|
|
HG3
|
C:MET128
|
4.3
|
30.4
|
1.0
|
|
N
|
C:HIS49
|
4.3
|
12.3
|
1.0
|
|
CA
|
C:HIS49
|
4.3
|
13.8
|
1.0
|
|
CE1
|
C:HIS130
|
4.3
|
20.9
|
1.0
|
|
ND1
|
C:HIS51
|
4.3
|
16.0
|
1.0
|
|
CG
|
C:HIS51
|
4.4
|
20.1
|
1.0
|
|
HE1
|
C:HIS74
|
4.5
|
23.6
|
1.0
|
|
O
|
C:HIS49
|
4.6
|
8.6
|
1.0
|
|
O
|
C:MET128
|
4.6
|
8.6
|
1.0
|
|
CG
|
C:HIS74
|
4.7
|
18.6
|
1.0
|
|
HE1
|
C:HIS130
|
4.7
|
25.1
|
1.0
|
|
C
|
C:HIS49
|
4.7
|
16.4
|
1.0
|
|
CG
|
C:HIS130
|
4.8
|
25.3
|
1.0
|
|
HE3
|
C:MET128
|
4.8
|
35.4
|
1.0
|
|
HG2
|
C:ARG149
|
4.9
|
40.7
|
1.0
|
|
C
|
C:MET128
|
4.9
|
16.3
|
1.0
|
|
CA
|
C:MET128
|
4.9
|
16.3
|
1.0
|
|
ND1
|
C:HIS74
|
5.0
|
12.6
|
1.0
|
|
Copper binding site 4 out
of 6 in 6vbs
Go back to
Copper Binding Sites List in 6vbs
Copper binding site 4 out
of 6 in the The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit.
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu202
b:42.1
occ:1.00
|
ND1
|
D:HIS49
|
2.2
|
16.2
|
1.0
|
|
NE2
|
D:HIS51
|
2.3
|
18.0
|
1.0
|
|
NE2
|
D:HIS130
|
2.3
|
30.5
|
1.0
|
|
HB2
|
D:HIS49
|
2.9
|
19.4
|
1.0
|
|
HD2
|
D:HIS130
|
2.9
|
33.8
|
1.0
|
|
HE2
|
D:HIS74
|
3.0
|
20.6
|
1.0
|
|
CD2
|
D:HIS130
|
3.0
|
28.2
|
1.0
|
|
HB3
|
D:MET128
|
3.0
|
22.8
|
1.0
|
|
O
|
D:HOH302
|
3.0
|
24.5
|
1.0
|
|
HG2
|
D:MET128
|
3.1
|
29.7
|
1.0
|
|
CE1
|
D:HIS51
|
3.1
|
20.4
|
1.0
|
|
HE1
|
D:HIS51
|
3.1
|
24.5
|
1.0
|
|
CE1
|
D:HIS49
|
3.2
|
19.4
|
1.0
|
|
CG
|
D:HIS49
|
3.2
|
16.6
|
1.0
|
|
HE1
|
D:HIS49
|
3.3
|
23.3
|
1.0
|
|
CD2
|
D:HIS51
|
3.4
|
19.5
|
1.0
|
|
NE2
|
D:HIS74
|
3.4
|
17.2
|
1.0
|
|
CE1
|
D:HIS130
|
3.5
|
24.1
|
1.0
|
|
CB
|
D:HIS49
|
3.5
|
16.2
|
1.0
|
|
HD2
|
D:HIS51
|
3.7
|
23.4
|
1.0
|
|
CG
|
D:MET128
|
3.8
|
24.7
|
1.0
|
|
CB
|
D:MET128
|
3.8
|
19.0
|
1.0
|
|
HD2
|
D:HIS74
|
3.8
|
22.8
|
1.0
|
|
HE1
|
D:HIS130
|
3.8
|
28.9
|
1.0
|
|
CD2
|
D:HIS74
|
3.9
|
19.0
|
1.0
|
|
HG3
|
D:MET128
|
4.1
|
29.7
|
1.0
|
|
H
|
D:HIS49
|
4.1
|
11.8
|
1.0
|
|
HB3
|
D:HIS49
|
4.2
|
19.4
|
1.0
|
|
HB2
|
D:MET128
|
4.2
|
22.8
|
1.0
|
|
CG
|
D:HIS130
|
4.2
|
25.2
|
1.0
|
|
ND1
|
D:HIS51
|
4.3
|
18.8
|
1.0
|
|
NE2
|
D:HIS49
|
4.3
|
15.5
|
1.0
|
|
CD2
|
D:HIS49
|
4.3
|
20.7
|
1.0
|
|
CE1
|
D:HIS74
|
4.4
|
21.4
|
1.0
|
|
N
|
D:HIS49
|
4.4
|
9.8
|
1.0
|
|
CA
|
D:HIS49
|
4.5
|
13.8
|
1.0
|
|
ND1
|
D:HIS130
|
4.5
|
29.6
|
1.0
|
|
CG
|
D:HIS51
|
4.5
|
19.2
|
1.0
|
|
HG2
|
D:ARG149
|
4.6
|
35.6
|
1.0
|
|
O
|
D:MET128
|
4.6
|
8.7
|
1.0
|
|
O4
|
D:SO4203
|
4.6
|
37.0
|
1.0
|
|
HE3
|
D:MET128
|
4.6
|
27.2
|
1.0
|
|
HE1
|
D:HIS74
|
4.6
|
25.6
|
1.0
|
|
O
|
D:HIS49
|
4.7
|
10.3
|
1.0
|
|
O
|
D:HOH320
|
4.7
|
31.4
|
1.0
|
|
C
|
D:MET128
|
4.9
|
16.3
|
1.0
|
|
C
|
D:HIS49
|
4.9
|
15.6
|
1.0
|
|
CA
|
D:MET128
|
4.9
|
19.1
|
1.0
|
|
CG
|
D:HIS74
|
4.9
|
13.0
|
1.0
|
|
Copper binding site 5 out
of 6 in 6vbs
Go back to
Copper Binding Sites List in 6vbs
Copper binding site 5 out
of 6 in the The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit.
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cu201
b:46.5
occ:1.00
|
NE2
|
E:HIS130
|
1.9
|
28.8
|
1.0
|
|
NE2
|
E:HIS51
|
2.0
|
18.9
|
1.0
|
|
ND1
|
E:HIS49
|
2.2
|
20.3
|
1.0
|
|
HB2
|
E:HIS49
|
2.7
|
28.3
|
1.0
|
|
CD2
|
E:HIS130
|
2.8
|
25.8
|
1.0
|
|
CE1
|
E:HIS51
|
2.9
|
26.1
|
1.0
|
|
HB3
|
E:MET128
|
2.9
|
25.5
|
1.0
|
|
HD2
|
E:HIS130
|
2.9
|
30.9
|
1.0
|
|
HE2
|
E:HIS74
|
2.9
|
30.7
|
1.0
|
|
HE1
|
E:HIS51
|
3.0
|
31.3
|
1.0
|
|
CE1
|
E:HIS130
|
3.0
|
28.3
|
1.0
|
|
CD2
|
E:HIS51
|
3.1
|
22.4
|
1.0
|
|
CG
|
E:HIS49
|
3.1
|
21.1
|
1.0
|
|
CE1
|
E:HIS49
|
3.2
|
25.9
|
1.0
|
|
HG2
|
E:MET128
|
3.3
|
24.4
|
1.0
|
|
NE2
|
E:HIS74
|
3.3
|
25.6
|
1.0
|
|
HE1
|
E:HIS130
|
3.3
|
33.9
|
1.0
|
|
HD2
|
E:HIS51
|
3.3
|
26.8
|
1.0
|
|
HE1
|
E:HIS49
|
3.4
|
31.0
|
1.0
|
|
CB
|
E:HIS49
|
3.4
|
23.6
|
1.0
|
|
HD2
|
E:HIS74
|
3.5
|
33.4
|
1.0
|
|
CD2
|
E:HIS74
|
3.6
|
27.9
|
1.0
|
|
CB
|
E:MET128
|
3.7
|
21.2
|
1.0
|
|
O
|
E:HOH403
|
3.9
|
33.5
|
1.0
|
|
CG
|
E:MET128
|
3.9
|
20.3
|
1.0
|
|
CG
|
E:HIS130
|
4.0
|
26.4
|
1.0
|
|
HB2
|
E:MET128
|
4.0
|
25.5
|
1.0
|
|
ND1
|
E:HIS51
|
4.0
|
19.2
|
1.0
|
|
H
|
E:HIS49
|
4.0
|
19.1
|
1.0
|
|
ND1
|
E:HIS130
|
4.1
|
25.8
|
1.0
|
|
HB3
|
E:HIS49
|
4.1
|
28.3
|
1.0
|
|
CG
|
E:HIS51
|
4.2
|
22.0
|
1.0
|
|
HG3
|
E:MET128
|
4.2
|
24.4
|
1.0
|
|
CE1
|
E:HIS74
|
4.3
|
33.3
|
1.0
|
|
NE2
|
E:HIS49
|
4.3
|
19.5
|
1.0
|
|
CD2
|
E:HIS49
|
4.3
|
20.5
|
1.0
|
|
N
|
E:HIS49
|
4.3
|
15.9
|
1.0
|
|
CA
|
E:HIS49
|
4.3
|
24.0
|
1.0
|
|
O
|
E:HOH317
|
4.6
|
28.5
|
1.0
|
|
O
|
E:HIS49
|
4.6
|
13.8
|
1.0
|
|
HE1
|
E:HIS74
|
4.6
|
39.9
|
1.0
|
|
O
|
E:MET128
|
4.7
|
12.9
|
1.0
|
|
CG
|
E:HIS74
|
4.7
|
28.7
|
1.0
|
|
C
|
E:HIS49
|
4.7
|
20.0
|
1.0
|
|
HG2
|
E:ARG149
|
4.8
|
24.9
|
1.0
|
|
HD1
|
E:HIS51
|
4.8
|
23.0
|
1.0
|
|
HE3
|
E:MET128
|
4.8
|
34.1
|
1.0
|
|
HD1
|
E:HIS130
|
4.9
|
30.9
|
1.0
|
|
CA
|
E:MET128
|
4.9
|
18.6
|
1.0
|
|
C
|
E:MET128
|
5.0
|
17.3
|
1.0
|
|
ND1
|
E:HIS74
|
5.0
|
24.1
|
1.0
|
|
Copper binding site 6 out
of 6 in 6vbs
Go back to
Copper Binding Sites List in 6vbs
Copper binding site 6 out
of 6 in the The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit.
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of The C2 Crystal Form of Sodci Superoxide Dismutase at 1.7 A Resolution with 6 Molecules in the Asymmetric Unit. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cu202
b:44.2
occ:1.00
|
NE2
|
F:HIS130
|
1.8
|
26.4
|
1.0
|
|
ND1
|
F:HIS49
|
2.1
|
18.3
|
1.0
|
|
NE2
|
F:HIS51
|
2.1
|
20.7
|
1.0
|
|
HB2
|
F:HIS49
|
2.6
|
23.1
|
1.0
|
|
HE2
|
F:HIS74
|
2.7
|
25.9
|
1.0
|
|
CE1
|
F:HIS130
|
2.8
|
30.1
|
1.0
|
|
CD2
|
F:HIS130
|
2.9
|
26.0
|
1.0
|
|
HE1
|
F:HIS130
|
2.9
|
36.0
|
1.0
|
|
CE1
|
F:HIS51
|
2.9
|
31.6
|
1.0
|
|
CG
|
F:HIS49
|
2.9
|
19.3
|
1.0
|
|
HE1
|
F:HIS51
|
3.0
|
37.9
|
1.0
|
|
CE1
|
F:HIS49
|
3.1
|
23.2
|
1.0
|
|
NE2
|
F:HIS74
|
3.1
|
21.6
|
1.0
|
|
HD2
|
F:HIS130
|
3.2
|
31.2
|
1.0
|
|
HB3
|
F:MET128
|
3.2
|
31.5
|
1.0
|
|
CB
|
F:HIS49
|
3.2
|
19.2
|
1.0
|
|
CD2
|
F:HIS51
|
3.2
|
25.1
|
1.0
|
|
HE1
|
F:HIS49
|
3.3
|
27.8
|
1.0
|
|
HD2
|
F:HIS74
|
3.4
|
30.5
|
1.0
|
|
CD2
|
F:HIS74
|
3.5
|
25.5
|
1.0
|
|
HD2
|
F:HIS51
|
3.5
|
30.1
|
1.0
|
|
HG2
|
F:MET128
|
3.5
|
29.7
|
1.0
|
|
HB3
|
F:HIS49
|
3.8
|
23.1
|
1.0
|
|
ND1
|
F:HIS130
|
3.9
|
19.4
|
1.0
|
|
CG
|
F:HIS130
|
4.0
|
19.2
|
1.0
|
|
CB
|
F:MET128
|
4.0
|
26.3
|
1.0
|
|
CE1
|
F:HIS74
|
4.0
|
23.3
|
1.0
|
|
O
|
F:HOH370
|
4.1
|
26.6
|
1.0
|
|
CD2
|
F:HIS49
|
4.1
|
19.1
|
1.0
|
|
ND1
|
F:HIS51
|
4.1
|
21.5
|
1.0
|
|
NE2
|
F:HIS49
|
4.1
|
15.2
|
1.0
|
|
O
|
F:HOH391
|
4.1
|
27.2
|
1.0
|
|
CG
|
F:MET128
|
4.2
|
24.7
|
1.0
|
|
H
|
F:HIS49
|
4.2
|
17.0
|
1.0
|
|
CG
|
F:HIS51
|
4.3
|
18.7
|
1.0
|
|
CA
|
F:HIS49
|
4.3
|
17.8
|
1.0
|
|
HB2
|
F:MET128
|
4.3
|
31.5
|
1.0
|
|
HE1
|
F:HIS74
|
4.4
|
28.0
|
1.0
|
|
N
|
F:HIS49
|
4.4
|
14.2
|
1.0
|
|
CG
|
F:HIS74
|
4.5
|
20.1
|
1.0
|
|
HG3
|
F:MET128
|
4.5
|
29.7
|
1.0
|
|
HD1
|
F:HIS130
|
4.6
|
23.3
|
1.0
|
|
O
|
F:HIS49
|
4.8
|
13.8
|
1.0
|
|
ND1
|
F:HIS74
|
4.8
|
16.8
|
1.0
|
|
C
|
F:HIS49
|
4.8
|
15.6
|
1.0
|
|
HD1
|
F:HIS51
|
4.9
|
25.8
|
1.0
|
|
HG2
|
F:ARG149
|
4.9
|
34.3
|
1.0
|
|
HD2
|
F:HIS49
|
4.9
|
22.9
|
1.0
|
|
HE2
|
F:HIS49
|
4.9
|
18.2
|
1.0
|
|
O
|
F:MET128
|
4.9
|
13.1
|
1.0
|
|
Reference:
P.W.Newhouse,
K.A.Satyshur,
J.M.Slauch,
K.T.Forest.
Structure and Muropeptide Binding of the Virulence Factor Superoxide Dismutase C1 From Salmonella Typhimurium To Be Published.
Page generated: Mon Jul 14 07:21:02 2025
|
