Atomistry » Copper » PDB 6pvz-6ri0 » 6q29
Atomistry »
  Copper »
    PDB 6pvz-6ri0 »
      6q29 »

Copper in PDB 6q29: Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy)

Enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy)

All present enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy):
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy), PDB code: 6q29 was solved by R.Miranda-Blancas, E.Rudino-Pinera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.15 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.550, 62.760, 67.120, 90.00, 93.88, 90.00
R / Rfree (%) 18 / 22

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy) (pdb code 6q29). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy), PDB code: 6q29:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6q29

Go back to Copper Binding Sites List in 6q29
Copper binding site 1 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu503

b:9.6
occ:1.00
ND1 A:HIS97 2.1 7.3 1.0
NE2 A:HIS135 2.2 9.3 1.0
NE2 A:HIS446 2.4 8.9 1.0
CE1 A:HIS97 2.9 6.1 1.0
CE1 A:HIS135 3.1 9.3 1.0
CD2 A:HIS135 3.1 6.2 1.0
CE1 A:HIS446 3.2 5.7 1.0
CG A:HIS97 3.2 7.3 1.0
CD2 A:HIS446 3.5 10.2 1.0
CZ2 A:TRP133 3.7 4.6 1.0
CB A:HIS97 3.7 6.4 1.0
CD2 A:HIS95 3.8 7.1 1.0
CE2 A:TRP133 4.0 4.6 1.0
NE2 A:HIS97 4.1 9.5 1.0
NE1 A:TRP133 4.1 6.6 1.0
ND1 A:HIS135 4.2 4.8 1.0
CG A:HIS135 4.3 5.6 1.0
CD2 A:HIS97 4.3 5.6 1.0
ND1 A:HIS446 4.4 6.7 1.0
NE2 A:HIS95 4.4 7.5 1.0
CH2 A:TRP133 4.4 6.9 1.0
CG A:HIS446 4.5 7.2 1.0
NE2 A:HIS396 4.7 6.1 1.0
CD2 A:HIS396 4.7 4.7 1.0
CA A:HIS97 5.0 3.5 1.0
CD2 A:TRP133 5.0 5.7 1.0

Copper binding site 2 out of 2 in 6q29

Go back to Copper Binding Sites List in 6q29
Copper binding site 2 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu504

b:9.0
occ:1.00
ND1 A:HIS450 2.2 7.6 1.0
ND1 A:HIS393 2.2 7.4 1.0
SG A:CYS445 2.2 6.0 1.0
CE1 A:HIS393 3.0 13.8 1.0
CE1 A:HIS450 3.1 8.0 1.0
CG A:HIS450 3.2 5.2 1.0
CG A:HIS393 3.3 6.2 1.0
CB A:HIS450 3.5 7.6 1.0
CB A:CYS445 3.5 11.6 1.0
CB A:HIS393 3.8 8.0 1.0
SD A:MET455 3.9 13.7 1.0
CB A:ILE447 4.2 8.2 1.0
NE2 A:HIS393 4.2 14.1 1.0
CA A:HIS393 4.2 5.9 1.0
NE2 A:HIS450 4.2 7.4 1.0
CD1 A:ILE447 4.3 5.5 1.0
CD2 A:HIS450 4.3 7.4 1.0
CD2 A:HIS393 4.4 11.1 1.0
CG1 A:ILE447 4.6 5.9 1.0
CE A:MET455 4.6 9.7 1.0
O A:ASP392 4.7 5.3 1.0
CD A:PRO394 4.7 7.1 1.0
O A:ILE447 4.8 8.7 1.0
CG2 A:ILE447 4.9 8.5 1.0
CA A:CYS445 5.0 8.2 1.0
N A:ILE447 5.0 6.8 1.0

Reference:

R.Miranda-Blancas, E.Rudino-Pinera. Dynamic Behavior of Alpha-Beta Loop at Laccase of Thermus Thermophilus at 1.7 Angstroms Resolution. To Be Published.
Page generated: Mon Jul 14 06:38:29 2025

Last articles

I in 2AK4
I in 2ARL
I in 2ANX
I in 2AQW
I in 2AF6
I in 2ANV
I in 2A0N
I in 1XC6
I in 1ZVV
I in 1Z7J
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy