Copper in PDB 6ju4: Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant
Enzymatic activity of Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant
All present enzymatic activity of Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant:
1.14.18.1;
Protein crystallography data
The structure of Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant, PDB code: 6ju4
was solved by
N.Fujieda,
K.Umakoshi,
Y.Nishikawa,
G.Kurisu,
S.Itoh,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
30.00 /
1.35
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.220,
118.143,
79.347,
90.00,
91.11,
90.00
|
|
R / Rfree (%)
|
15.7 /
20.1
|
Copper Binding Sites:
The binding sites of Copper atom in the Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant
(pdb code 6ju4). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the
Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant, PDB code: 6ju4:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Copper binding site 1 out
of 8 in 6ju4
Go back to
Copper Binding Sites List in 6ju4
Copper binding site 1 out
of 8 in the Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu701
b:15.2
occ:0.59
|
CU
|
A:CU701
|
0.0
|
15.2
|
0.6
|
|
CU
|
A:CU701
|
1.8
|
20.9
|
0.2
|
|
NE2
|
A:HIS67
|
2.0
|
14.0
|
1.0
|
|
NE2
|
A:HIS103
|
2.1
|
11.4
|
1.0
|
|
NE2
|
A:HIS94
|
2.1
|
16.8
|
1.0
|
|
O
|
A:HOH820
|
2.5
|
27.9
|
1.0
|
|
CD2
|
A:HIS67
|
2.9
|
13.5
|
1.0
|
|
CE1
|
A:HIS103
|
2.9
|
11.5
|
1.0
|
|
CE1
|
A:HIS94
|
3.0
|
16.3
|
1.0
|
|
CE1
|
A:HIS67
|
3.1
|
13.6
|
1.0
|
|
CD2
|
A:HIS94
|
3.1
|
17.5
|
1.0
|
|
CD2
|
A:HIS103
|
3.2
|
10.3
|
1.0
|
|
CB
|
A:CYS92
|
3.5
|
15.1
|
1.0
|
|
SG
|
A:CYS92
|
3.7
|
15.5
|
1.0
|
|
OE2
|
A:DAH513
|
3.7
|
23.9
|
0.8
|
|
CU
|
A:CU702
|
3.8
|
11.8
|
0.5
|
|
CG
|
A:HIS67
|
4.0
|
10.8
|
1.0
|
|
ND1
|
A:HIS103
|
4.1
|
10.2
|
1.0
|
|
ND1
|
A:HIS67
|
4.1
|
11.7
|
1.0
|
|
ND1
|
A:HIS94
|
4.1
|
15.3
|
1.0
|
|
CG
|
A:HIS94
|
4.2
|
15.6
|
1.0
|
|
CG
|
A:HIS103
|
4.3
|
9.0
|
1.0
|
|
NE2
|
A:HIS372
|
4.3
|
11.9
|
1.0
|
|
CZ
|
A:PHE368
|
4.4
|
10.0
|
1.0
|
|
CU
|
A:CU702
|
4.4
|
12.2
|
0.4
|
|
CE1
|
A:HIS372
|
4.5
|
11.1
|
1.0
|
|
CZ3
|
A:TRP102
|
4.5
|
10.6
|
1.0
|
|
CE2
|
A:PHE368
|
4.6
|
10.2
|
1.0
|
|
OH
|
A:DAH513
|
4.6
|
16.5
|
0.2
|
|
OZ
|
A:DAH513
|
4.7
|
17.6
|
0.8
|
|
O
|
A:VAL93
|
4.8
|
14.3
|
1.0
|
|
CA
|
A:CYS92
|
4.8
|
14.1
|
1.0
|
|
CE2
|
A:DAH513
|
4.9
|
16.4
|
0.2
|
|
CE2
|
A:DAH513
|
4.9
|
17.9
|
0.8
|
|
CE3
|
A:TRP102
|
5.0
|
9.7
|
1.0
|
|
CE1
|
A:PHE99
|
5.0
|
9.5
|
1.0
|
|
Copper binding site 2 out
of 8 in 6ju4
Go back to
Copper Binding Sites List in 6ju4
Copper binding site 2 out
of 8 in the Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu701
b:20.9
occ:0.22
|
CU
|
A:CU701
|
0.0
|
20.9
|
0.2
|
|
O
|
A:HOH820
|
1.8
|
27.9
|
1.0
|
|
CU
|
A:CU701
|
1.8
|
15.2
|
0.6
|
|
NE2
|
A:HIS94
|
2.1
|
16.8
|
1.0
|
|
OE2
|
A:DAH513
|
2.1
|
23.9
|
0.8
|
|
NE2
|
A:HIS67
|
2.3
|
14.0
|
1.0
|
|
CE1
|
A:HIS67
|
2.6
|
13.6
|
1.0
|
|
OH
|
A:DAH513
|
2.9
|
16.5
|
0.2
|
|
CD2
|
A:HIS94
|
2.9
|
17.5
|
1.0
|
|
OZ
|
A:DAH513
|
3.0
|
17.6
|
0.8
|
|
CE1
|
A:HIS94
|
3.1
|
16.3
|
1.0
|
|
CU
|
A:CU702
|
3.2
|
11.8
|
0.5
|
|
CE2
|
A:DAH513
|
3.2
|
16.4
|
0.2
|
|
CE2
|
A:DAH513
|
3.3
|
17.9
|
0.8
|
|
CZ
|
A:DAH513
|
3.5
|
16.3
|
0.2
|
|
CD2
|
A:HIS67
|
3.6
|
13.5
|
1.0
|
|
CZ
|
A:DAH513
|
3.6
|
15.6
|
0.8
|
|
NE2
|
A:HIS103
|
3.7
|
11.4
|
1.0
|
|
ND1
|
A:HIS67
|
3.9
|
11.7
|
1.0
|
|
SG
|
A:CYS92
|
3.9
|
15.5
|
1.0
|
|
CU
|
A:CU702
|
3.9
|
12.2
|
0.4
|
|
CG
|
A:HIS94
|
4.0
|
15.6
|
1.0
|
|
ND1
|
A:HIS94
|
4.1
|
15.3
|
1.0
|
|
CG1
|
A:VAL359
|
4.2
|
26.1
|
1.0
|
|
CE1
|
A:HIS103
|
4.4
|
11.5
|
1.0
|
|
CG
|
A:HIS67
|
4.4
|
10.8
|
1.0
|
|
CD2
|
A:DAH513
|
4.4
|
15.7
|
0.2
|
|
CD2
|
A:DAH513
|
4.5
|
16.1
|
0.8
|
|
NE2
|
A:HIS328
|
4.5
|
10.8
|
1.0
|
|
CE2
|
A:PHE368
|
4.5
|
10.2
|
1.0
|
|
CB
|
A:CYS92
|
4.5
|
15.1
|
1.0
|
|
NE2
|
A:HIS372
|
4.6
|
11.9
|
1.0
|
|
NE2
|
A:HIS332
|
4.6
|
12.7
|
1.0
|
|
CE1
|
A:HIS328
|
4.7
|
11.1
|
1.0
|
|
CD2
|
A:HIS103
|
4.8
|
10.3
|
1.0
|
|
CZ
|
A:PHE368
|
4.8
|
10.0
|
1.0
|
|
CE1
|
A:DAH513
|
4.9
|
14.3
|
0.2
|
|
CE1
|
A:DAH513
|
5.0
|
14.4
|
0.8
|
|
Copper binding site 3 out
of 8 in 6ju4
Go back to
Copper Binding Sites List in 6ju4
Copper binding site 3 out
of 8 in the Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu702
b:12.2
occ:0.44
|
CU
|
A:CU702
|
0.0
|
12.2
|
0.4
|
|
CU
|
A:CU702
|
1.0
|
11.8
|
0.5
|
|
NE2
|
A:HIS372
|
1.9
|
11.9
|
1.0
|
|
NE2
|
A:HIS332
|
1.9
|
12.7
|
1.0
|
|
O
|
A:HOH820
|
2.3
|
27.9
|
1.0
|
|
NE2
|
A:HIS328
|
2.3
|
10.8
|
1.0
|
|
CD2
|
A:HIS372
|
2.7
|
13.0
|
1.0
|
|
CE1
|
A:HIS332
|
2.8
|
11.8
|
1.0
|
|
CE1
|
A:HIS372
|
3.0
|
11.1
|
1.0
|
|
CD2
|
A:HIS332
|
3.0
|
11.4
|
1.0
|
|
CD2
|
A:HIS328
|
3.0
|
9.6
|
1.0
|
|
CE1
|
A:HIS328
|
3.5
|
11.1
|
1.0
|
|
CE2
|
A:PHE368
|
3.6
|
10.2
|
1.0
|
|
OE2
|
A:DAH513
|
3.8
|
23.9
|
0.8
|
|
CG
|
A:HIS372
|
3.9
|
9.5
|
1.0
|
|
ND1
|
A:HIS332
|
3.9
|
11.9
|
1.0
|
|
CU
|
A:CU701
|
3.9
|
20.9
|
0.2
|
|
OZ
|
A:DAH513
|
4.0
|
17.6
|
0.8
|
|
ND1
|
A:HIS372
|
4.0
|
10.3
|
1.0
|
|
CD2
|
A:HIS371
|
4.0
|
9.3
|
1.0
|
|
CG
|
A:HIS332
|
4.1
|
10.1
|
1.0
|
|
CD2
|
A:PHE368
|
4.2
|
8.7
|
1.0
|
|
CG
|
A:HIS328
|
4.3
|
9.8
|
1.0
|
|
CZ
|
A:PHE368
|
4.3
|
10.0
|
1.0
|
|
OH
|
A:DAH513
|
4.3
|
16.5
|
0.2
|
|
CE2
|
A:DAH513
|
4.4
|
17.9
|
0.8
|
|
CU
|
A:CU701
|
4.4
|
15.2
|
0.6
|
|
CZ
|
A:DAH513
|
4.4
|
15.6
|
0.8
|
|
NE2
|
A:HIS371
|
4.4
|
10.3
|
1.0
|
|
ND1
|
A:HIS328
|
4.4
|
11.7
|
1.0
|
|
CZ
|
A:DAH513
|
4.7
|
16.3
|
0.2
|
|
CE2
|
A:DAH513
|
4.7
|
16.4
|
0.2
|
|
NE2
|
A:HIS103
|
4.9
|
11.4
|
1.0
|
|
NE2
|
A:HIS67
|
5.0
|
14.0
|
1.0
|
|
Copper binding site 4 out
of 8 in 6ju4
Go back to
Copper Binding Sites List in 6ju4
Copper binding site 4 out
of 8 in the Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu702
b:11.8
occ:0.45
|
CU
|
A:CU702
|
0.0
|
11.8
|
0.5
|
|
CU
|
A:CU702
|
1.0
|
12.2
|
0.4
|
|
O
|
A:HOH820
|
1.7
|
27.9
|
1.0
|
|
NE2
|
A:HIS328
|
1.8
|
10.8
|
1.0
|
|
NE2
|
A:HIS372
|
2.2
|
11.9
|
1.0
|
|
NE2
|
A:HIS332
|
2.3
|
12.7
|
1.0
|
|
CE1
|
A:HIS328
|
2.8
|
11.1
|
1.0
|
|
CD2
|
A:HIS328
|
2.9
|
9.6
|
1.0
|
|
OE2
|
A:DAH513
|
2.9
|
23.9
|
0.8
|
|
CE1
|
A:HIS372
|
3.0
|
11.1
|
1.0
|
|
CD2
|
A:HIS332
|
3.2
|
11.4
|
1.0
|
|
CU
|
A:CU701
|
3.2
|
20.9
|
0.2
|
|
CE1
|
A:HIS332
|
3.3
|
11.8
|
1.0
|
|
CD2
|
A:HIS372
|
3.4
|
13.0
|
1.0
|
|
CE2
|
A:DAH513
|
3.7
|
17.9
|
0.8
|
|
OZ
|
A:DAH513
|
3.7
|
17.6
|
0.8
|
|
CU
|
A:CU701
|
3.8
|
15.2
|
0.6
|
|
ND1
|
A:HIS328
|
3.9
|
11.7
|
1.0
|
|
OH
|
A:DAH513
|
4.0
|
16.5
|
0.2
|
|
CG
|
A:HIS328
|
4.0
|
9.8
|
1.0
|
|
CZ
|
A:DAH513
|
4.0
|
15.6
|
0.8
|
|
CE2
|
A:DAH513
|
4.0
|
16.4
|
0.2
|
|
CE2
|
A:PHE368
|
4.1
|
10.2
|
1.0
|
|
CZ
|
A:DAH513
|
4.2
|
16.3
|
0.2
|
|
ND1
|
A:HIS372
|
4.2
|
10.3
|
1.0
|
|
CG
|
A:HIS332
|
4.3
|
10.1
|
1.0
|
|
ND1
|
A:HIS332
|
4.3
|
11.9
|
1.0
|
|
NE2
|
A:HIS103
|
4.4
|
11.4
|
1.0
|
|
CG
|
A:HIS372
|
4.4
|
9.5
|
1.0
|
|
CE1
|
A:PHE99
|
4.6
|
9.5
|
1.0
|
|
NE2
|
A:HIS67
|
4.6
|
14.0
|
1.0
|
|
CD2
|
A:DAH513
|
4.6
|
16.1
|
0.8
|
|
CZ
|
A:PHE368
|
4.7
|
10.0
|
1.0
|
|
NE2
|
A:HIS94
|
4.8
|
16.8
|
1.0
|
|
CD2
|
A:HIS103
|
4.8
|
10.3
|
1.0
|
|
CD2
|
A:DAH513
|
4.9
|
15.7
|
0.2
|
|
CD2
|
A:HIS371
|
4.9
|
9.3
|
1.0
|
|
CD2
|
A:PHE368
|
4.9
|
8.7
|
1.0
|
|
CZ
|
A:PHE99
|
4.9
|
10.5
|
1.0
|
|
CD2
|
A:HIS94
|
4.9
|
17.5
|
1.0
|
|
CE1
|
A:HIS67
|
5.0
|
13.6
|
1.0
|
|
Copper binding site 5 out
of 8 in 6ju4
Go back to
Copper Binding Sites List in 6ju4
Copper binding site 5 out
of 8 in the Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu701
b:17.1
occ:0.65
|
CU
|
B:CU701
|
0.0
|
17.1
|
0.7
|
|
CU
|
B:CU701
|
1.9
|
16.0
|
0.2
|
|
NE2
|
B:HIS67
|
2.0
|
14.5
|
1.0
|
|
NE2
|
B:HIS103
|
2.1
|
11.9
|
1.0
|
|
NE2
|
B:HIS94
|
2.1
|
14.9
|
1.0
|
|
O
|
B:HOH846
|
2.4
|
24.8
|
1.0
|
|
CD2
|
B:HIS67
|
2.9
|
13.7
|
1.0
|
|
CE1
|
B:HIS103
|
2.9
|
11.6
|
1.0
|
|
CE1
|
B:HIS67
|
3.1
|
12.9
|
1.0
|
|
CE1
|
B:HIS94
|
3.1
|
14.8
|
1.0
|
|
CD2
|
B:HIS94
|
3.2
|
15.6
|
1.0
|
|
CD2
|
B:HIS103
|
3.2
|
11.0
|
1.0
|
|
CB
|
B:CYS92
|
3.6
|
13.9
|
1.0
|
|
CU
|
B:CU702
|
3.7
|
12.7
|
0.5
|
|
SG
|
B:CYS92
|
3.7
|
14.5
|
1.0
|
|
OE2
|
B:DAH513
|
3.8
|
17.5
|
0.6
|
|
CG
|
B:HIS67
|
4.0
|
10.6
|
1.0
|
|
ND1
|
B:HIS103
|
4.1
|
10.8
|
1.0
|
|
ND1
|
B:HIS67
|
4.1
|
11.8
|
1.0
|
|
ND1
|
B:HIS94
|
4.2
|
13.5
|
1.0
|
|
CG
|
B:HIS103
|
4.3
|
10.2
|
1.0
|
|
CG
|
B:HIS94
|
4.3
|
14.7
|
1.0
|
|
NE2
|
B:HIS372
|
4.3
|
12.8
|
1.0
|
|
CU
|
B:CU702
|
4.3
|
13.6
|
0.4
|
|
CZ
|
B:PHE368
|
4.4
|
11.6
|
1.0
|
|
CE1
|
B:HIS372
|
4.5
|
12.1
|
1.0
|
|
CE2
|
B:PHE368
|
4.5
|
10.3
|
1.0
|
|
CZ3
|
B:TRP102
|
4.6
|
9.0
|
1.0
|
|
OH
|
B:DAH513
|
4.6
|
17.1
|
0.4
|
|
OZ
|
B:DAH513
|
4.6
|
16.4
|
0.6
|
|
O
|
B:VAL93
|
4.8
|
13.6
|
1.0
|
|
CE1
|
B:PHE99
|
4.9
|
9.6
|
1.0
|
|
CA
|
B:CYS92
|
4.9
|
10.9
|
1.0
|
|
NE2
|
B:HIS328
|
4.9
|
11.6
|
1.0
|
|
CE2
|
B:DAH513
|
4.9
|
17.0
|
0.4
|
|
CE2
|
B:DAH513
|
5.0
|
16.7
|
0.6
|
|
Copper binding site 6 out
of 8 in 6ju4
Go back to
Copper Binding Sites List in 6ju4
Copper binding site 6 out
of 8 in the Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu701
b:16.0
occ:0.17
|
CU
|
B:CU701
|
0.0
|
16.0
|
0.2
|
|
O
|
B:HOH846
|
1.7
|
24.8
|
1.0
|
|
CU
|
B:CU701
|
1.9
|
17.1
|
0.7
|
|
NE2
|
B:HIS94
|
2.2
|
14.9
|
1.0
|
|
NE2
|
B:HIS67
|
2.3
|
14.5
|
1.0
|
|
OE2
|
B:DAH513
|
2.3
|
17.5
|
0.6
|
|
CE1
|
B:HIS67
|
2.5
|
12.9
|
1.0
|
|
OH
|
B:DAH513
|
2.9
|
17.1
|
0.4
|
|
OZ
|
B:DAH513
|
3.0
|
16.4
|
0.6
|
|
CD2
|
B:HIS94
|
3.0
|
15.6
|
1.0
|
|
CE1
|
B:HIS94
|
3.1
|
14.8
|
1.0
|
|
CU
|
B:CU702
|
3.2
|
12.7
|
0.5
|
|
CE2
|
B:DAH513
|
3.2
|
17.0
|
0.4
|
|
CE2
|
B:DAH513
|
3.3
|
16.7
|
0.6
|
|
CZ
|
B:DAH513
|
3.5
|
14.8
|
0.4
|
|
CZ
|
B:DAH513
|
3.6
|
13.5
|
0.6
|
|
CD2
|
B:HIS67
|
3.6
|
13.7
|
1.0
|
|
ND1
|
B:HIS67
|
3.8
|
11.8
|
1.0
|
|
NE2
|
B:HIS103
|
3.8
|
11.9
|
1.0
|
|
SG
|
B:CYS92
|
3.9
|
14.5
|
1.0
|
|
CU
|
B:CU702
|
4.0
|
13.6
|
0.4
|
|
CG
|
B:HIS94
|
4.0
|
14.7
|
1.0
|
|
ND1
|
B:HIS94
|
4.1
|
13.5
|
1.0
|
|
CG2
|
B:VAL359
|
4.1
|
27.5
|
1.0
|
|
CG1
|
B:VAL359
|
4.2
|
28.2
|
1.0
|
|
CG
|
B:HIS67
|
4.3
|
10.6
|
1.0
|
|
CE2
|
B:PHE368
|
4.5
|
10.3
|
1.0
|
|
CE1
|
B:HIS103
|
4.5
|
11.6
|
1.0
|
|
CD2
|
B:DAH513
|
4.5
|
15.8
|
0.4
|
|
CD2
|
B:DAH513
|
4.5
|
15.4
|
0.6
|
|
NE2
|
B:HIS328
|
4.6
|
11.6
|
1.0
|
|
CB
|
B:CYS92
|
4.6
|
13.9
|
1.0
|
|
NE2
|
B:HIS332
|
4.7
|
11.4
|
1.0
|
|
CB
|
B:VAL359
|
4.7
|
21.2
|
1.0
|
|
NE2
|
B:HIS372
|
4.7
|
12.8
|
1.0
|
|
CE1
|
B:HIS328
|
4.7
|
11.5
|
1.0
|
|
CZ
|
B:PHE368
|
4.9
|
11.6
|
1.0
|
|
CD2
|
B:HIS103
|
4.9
|
11.0
|
1.0
|
|
CE1
|
B:DAH513
|
4.9
|
14.2
|
0.4
|
|
CE1
|
B:HIS332
|
4.9
|
13.0
|
1.0
|
|
CE1
|
B:DAH513
|
4.9
|
15.5
|
0.6
|
|
Copper binding site 7 out
of 8 in 6ju4
Go back to
Copper Binding Sites List in 6ju4
Copper binding site 7 out
of 8 in the Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 7 of Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu702
b:13.6
occ:0.43
|
CU
|
B:CU702
|
0.0
|
13.6
|
0.4
|
|
CU
|
B:CU702
|
1.1
|
12.7
|
0.5
|
|
NE2
|
B:HIS332
|
1.8
|
11.4
|
1.0
|
|
NE2
|
B:HIS372
|
1.9
|
12.8
|
1.0
|
|
O
|
B:HOH846
|
2.3
|
24.8
|
1.0
|
|
NE2
|
B:HIS328
|
2.3
|
11.6
|
1.0
|
|
CE1
|
B:HIS332
|
2.7
|
13.0
|
1.0
|
|
CD2
|
B:HIS372
|
2.7
|
13.0
|
1.0
|
|
CE1
|
B:HIS372
|
2.9
|
12.1
|
1.0
|
|
CD2
|
B:HIS332
|
3.0
|
11.7
|
1.0
|
|
CD2
|
B:HIS328
|
3.0
|
10.7
|
1.0
|
|
CE1
|
B:HIS328
|
3.5
|
11.5
|
1.0
|
|
CE2
|
B:PHE368
|
3.7
|
10.3
|
1.0
|
|
OE2
|
B:DAH513
|
3.9
|
17.5
|
0.6
|
|
ND1
|
B:HIS332
|
3.9
|
11.7
|
1.0
|
|
CG
|
B:HIS372
|
3.9
|
10.6
|
1.0
|
|
OZ
|
B:DAH513
|
3.9
|
16.4
|
0.6
|
|
ND1
|
B:HIS372
|
3.9
|
11.3
|
1.0
|
|
CU
|
B:CU701
|
4.0
|
16.0
|
0.2
|
|
CG
|
B:HIS332
|
4.0
|
9.0
|
1.0
|
|
CD2
|
B:HIS371
|
4.1
|
12.1
|
1.0
|
|
CD2
|
B:PHE368
|
4.2
|
9.2
|
1.0
|
|
OH
|
B:DAH513
|
4.3
|
17.1
|
0.4
|
|
CG
|
B:HIS328
|
4.3
|
10.5
|
1.0
|
|
CU
|
B:CU701
|
4.3
|
17.1
|
0.7
|
|
CZ
|
B:PHE368
|
4.4
|
11.6
|
1.0
|
|
CE2
|
B:DAH513
|
4.4
|
16.7
|
0.6
|
|
CZ
|
B:DAH513
|
4.4
|
13.5
|
0.6
|
|
ND1
|
B:HIS328
|
4.4
|
11.5
|
1.0
|
|
NE2
|
B:HIS371
|
4.5
|
9.8
|
1.0
|
|
CZ
|
B:DAH513
|
4.6
|
14.8
|
0.4
|
|
CE2
|
B:DAH513
|
4.6
|
17.0
|
0.4
|
|
NE2
|
B:HIS103
|
4.9
|
11.9
|
1.0
|
|
NE2
|
B:HIS67
|
5.0
|
14.5
|
1.0
|
|
Copper binding site 8 out
of 8 in 6ju4
Go back to
Copper Binding Sites List in 6ju4
Copper binding site 8 out
of 8 in the Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 8 of Aspergillus Oryzae Pro-Tyrosinase F513Y Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu702
b:12.7
occ:0.47
|
CU
|
B:CU702
|
0.0
|
12.7
|
0.5
|
|
CU
|
B:CU702
|
1.1
|
13.6
|
0.4
|
|
O
|
B:HOH846
|
1.7
|
24.8
|
1.0
|
|
NE2
|
B:HIS328
|
1.8
|
11.6
|
1.0
|
|
NE2
|
B:HIS332
|
2.3
|
11.4
|
1.0
|
|
NE2
|
B:HIS372
|
2.3
|
12.8
|
1.0
|
|
CE1
|
B:HIS328
|
2.7
|
11.5
|
1.0
|
|
CD2
|
B:HIS328
|
2.9
|
10.7
|
1.0
|
|
OE2
|
B:DAH513
|
3.0
|
17.5
|
0.6
|
|
CE1
|
B:HIS372
|
3.0
|
12.1
|
1.0
|
|
CD2
|
B:HIS332
|
3.2
|
11.7
|
1.0
|
|
CU
|
B:CU701
|
3.2
|
16.0
|
0.2
|
|
CE1
|
B:HIS332
|
3.2
|
13.0
|
1.0
|
|
CD2
|
B:HIS372
|
3.5
|
13.0
|
1.0
|
|
OZ
|
B:DAH513
|
3.6
|
16.4
|
0.6
|
|
CE2
|
B:DAH513
|
3.7
|
16.7
|
0.6
|
|
CU
|
B:CU701
|
3.7
|
17.1
|
0.7
|
|
ND1
|
B:HIS328
|
3.9
|
11.5
|
1.0
|
|
CE2
|
B:DAH513
|
3.9
|
17.0
|
0.4
|
|
OH
|
B:DAH513
|
3.9
|
17.1
|
0.4
|
|
CZ
|
B:DAH513
|
3.9
|
13.5
|
0.6
|
|
CG
|
B:HIS328
|
4.0
|
10.5
|
1.0
|
|
CZ
|
B:DAH513
|
4.2
|
14.8
|
0.4
|
|
CE2
|
B:PHE368
|
4.2
|
10.3
|
1.0
|
|
ND1
|
B:HIS372
|
4.3
|
11.3
|
1.0
|
|
ND1
|
B:HIS332
|
4.3
|
11.7
|
1.0
|
|
CG
|
B:HIS332
|
4.3
|
9.0
|
1.0
|
|
NE2
|
B:HIS103
|
4.4
|
11.9
|
1.0
|
|
CG
|
B:HIS372
|
4.5
|
10.6
|
1.0
|
|
CE1
|
B:PHE99
|
4.5
|
9.6
|
1.0
|
|
NE2
|
B:HIS67
|
4.6
|
14.5
|
1.0
|
|
CD2
|
B:DAH513
|
4.7
|
15.4
|
0.6
|
|
NE2
|
B:HIS94
|
4.7
|
14.9
|
1.0
|
|
CZ
|
B:PHE368
|
4.8
|
11.6
|
1.0
|
|
CD2
|
B:DAH513
|
4.8
|
15.8
|
0.4
|
|
CD2
|
B:HIS103
|
4.8
|
11.0
|
1.0
|
|
CD2
|
B:HIS94
|
4.8
|
15.6
|
1.0
|
|
CZ
|
B:PHE99
|
4.9
|
9.5
|
1.0
|
|
CD2
|
B:PHE368
|
4.9
|
9.2
|
1.0
|
|
CD2
|
B:HIS371
|
5.0
|
12.1
|
1.0
|
|
Reference:
N.Fujieda,
K.Umakoshi,
Y.Ochi,
Y.Nishikawa,
S.Yanagisawa,
M.Kubo,
G.Kurisu,
S.Itoh.
Copper-Oxygen Dynamics in Tyrosinase Mechanism. Angew.Chem.Int.Ed.Engl. 2020.
ISSN: ESSN 1521-3773
PubMed: 32356371
DOI: 10.1002/ANIE.202004733
Page generated: Mon Jul 14 06:18:44 2025
|
