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Copper in PDB 6akn: X-Ray Crystal Structure of Pseudoazurin MET16LEU Variant

Protein crystallography data

The structure of X-Ray Crystal Structure of Pseudoazurin MET16LEU Variant, PDB code: 6akn was solved by C.Sakai, T.Yamaguchi, T.Kohzuma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.19
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 34.050, 60.220, 48.030, 90.00, 95.80, 90.00
R / Rfree (%) 9.9 / 13.3

Copper Binding Sites:

The binding sites of Copper atom in the X-Ray Crystal Structure of Pseudoazurin MET16LEU Variant (pdb code 6akn). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the X-Ray Crystal Structure of Pseudoazurin MET16LEU Variant, PDB code: 6akn:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6akn

Go back to Copper Binding Sites List in 6akn
Copper binding site 1 out of 2 in the X-Ray Crystal Structure of Pseudoazurin MET16LEU Variant


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of X-Ray Crystal Structure of Pseudoazurin MET16LEU Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:6.6
occ:1.00
ND1 A:HIS40 2.0 5.3 1.0
ND1 A:HIS81 2.1 7.2 1.0
SG A:CYS78 2.2 6.1 1.0
SD A:MET86 2.5 5.9 1.0
HB2 A:HIS81 2.8 7.5 1.0
CE1 A:HIS40 3.0 6.9 1.0
CE1 A:HIS81 3.0 8.4 1.0
HA A:HIS40 3.1 6.3 1.0
CG A:HIS40 3.1 5.0 1.0
CG A:HIS81 3.1 6.1 1.0
HE1 A:HIS40 3.1 8.3 1.0
HB3 A:HIS40 3.2 5.6 1.0
CB A:CYS78 3.2 4.7 1.0
HE1 A:HIS81 3.2 10.1 1.0
HB3 A:CYS78 3.2 5.7 1.0
HE1 A:MET86 3.3 11.1 1.0
HB2 A:CYS78 3.3 5.7 1.0
CE A:MET86 3.4 7.4 1.0
CB A:HIS81 3.4 6.3 1.0
CB A:HIS40 3.5 4.7 1.0
HE2 A:MET86 3.5 11.1 1.0
HG2 A:PRO80 3.7 11.7 1.0
CA A:HIS40 3.7 5.2 1.0
CG A:MET86 3.9 4.8 1.0
HB3 A:HIS81 4.0 7.5 1.0
HD22 A:LEU16 4.0 10.8 1.0
HG2 A:MET86 4.0 5.7 1.0
HB3 A:MET86 4.0 4.7 1.0
H A:HIS81 4.1 7.5 1.0
H A:ASN41 4.1 6.1 1.0
NE2 A:HIS40 4.1 7.0 1.0
NE2 A:HIS81 4.2 9.3 1.0
CD2 A:HIS40 4.2 5.4 1.0
CD2 A:HIS81 4.2 8.8 1.0
O A:GLY39 4.2 8.4 1.0
HE3 A:MET86 4.3 11.1 1.0
HB2 A:MET86 4.3 4.7 1.0
CB A:MET86 4.3 4.0 1.0
HB2 A:HIS40 4.4 5.6 1.0
N A:HIS81 4.5 6.3 1.0
N A:HIS40 4.5 5.8 1.0
CA A:HIS81 4.5 6.0 1.0
HB3 A:LEU16 4.5 5.4 1.0
CA A:CYS78 4.6 4.5 1.0
CG A:PRO80 4.6 9.7 1.0
HD2 A:PRO80 4.6 8.7 1.0
HG3 A:MET86 4.7 5.7 1.0
C A:GLY39 4.7 7.2 1.0
N A:ASN41 4.8 5.1 1.0
C A:HIS40 4.8 4.6 1.0
CD2 A:LEU16 4.9 7.2 1.0
HA A:CYS78 4.9 5.4 1.0

Copper binding site 2 out of 2 in 6akn

Go back to Copper Binding Sites List in 6akn
Copper binding site 2 out of 2 in the X-Ray Crystal Structure of Pseudoazurin MET16LEU Variant


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of X-Ray Crystal Structure of Pseudoazurin MET16LEU Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:7.2
occ:1.00
ND1 B:HIS40 2.0 5.0 1.0
ND1 B:HIS81 2.0 5.9 1.0
SG B:CYS78 2.2 6.2 1.0
SD B:MET86 2.7 5.8 1.0
HB2 B:HIS81 2.7 7.1 1.0
HA B:HIS40 2.9 6.0 1.0
CE1 B:HIS40 3.0 6.8 1.0
CE1 B:HIS81 3.0 6.9 1.0
CG B:HIS40 3.1 5.0 1.0
CG B:HIS81 3.1 5.7 1.0
HE1 B:HIS40 3.1 8.1 1.0
CB B:CYS78 3.2 5.7 1.0
HE1 B:HIS81 3.2 8.3 1.0
HB3 B:HIS40 3.2 6.4 1.0
HB2 B:CYS78 3.2 6.8 1.0
HB3 B:CYS78 3.2 6.8 1.0
HE1 B:MET86 3.3 9.7 1.0
CB B:HIS81 3.4 5.9 1.0
CB B:HIS40 3.4 5.3 1.0
CE B:MET86 3.5 6.5 1.0
HE2 B:MET86 3.6 9.7 1.0
CA B:HIS40 3.6 5.0 1.0
HG2 B:PRO80 3.7 10.8 1.0
HB3 B:HIS81 3.9 7.1 1.0
O B:GLY39 4.0 6.3 1.0
H B:HIS81 4.0 7.6 1.0
H B:ASN41 4.0 6.6 1.0
CG B:MET86 4.1 5.0 1.0
NE2 B:HIS40 4.1 6.2 1.0
HD23 B:LEU16 4.1 11.3 1.0
NE2 B:HIS81 4.2 9.2 1.0
CD2 B:HIS40 4.2 5.9 1.0
HG2 B:MET86 4.2 5.9 1.0
CD2 B:HIS81 4.2 8.5 1.0
HB3 B:MET86 4.2 5.5 1.0
HE3 B:MET86 4.4 9.7 1.0
N B:HIS40 4.4 5.0 1.0
HB2 B:HIS40 4.4 6.4 1.0
N B:HIS81 4.4 6.3 1.0
HB2 B:MET86 4.5 5.5 1.0
C B:GLY39 4.5 5.6 1.0
CB B:MET86 4.5 4.6 1.0
CA B:HIS81 4.5 6.1 1.0
CA B:CYS78 4.6 5.3 1.0
HB3 B:LEU16 4.6 6.6 1.0
HD2 B:PRO80 4.6 8.3 1.0
CG B:PRO80 4.6 9.0 1.0
N B:ASN41 4.7 5.5 1.0
C B:HIS40 4.7 5.5 1.0
HG3 B:MET86 4.9 5.9 1.0
HA B:CYS78 4.9 6.4 1.0

Reference:

C.Sakai, T.Yamaguchi, T.Kohzuma. X-Ray Crystal Structure of Pseudoazurin MET16LEU Variant To Be Published.
Page generated: Mon Jul 14 05:53:07 2025

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