Atomistry » Copper » PDB 5nlp-5ogg » 5nq7
Atomistry »
  Copper »
    PDB 5nlp-5ogg »
      5nq7 »

Copper in PDB 5nq7: Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I

Enzymatic activity of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I

All present enzymatic activity of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I:
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I, PDB code: 5nq7 was solved by M.Orlikowska, M.De J.Rostro-Alanis, A.Bujacz, C.Hernandez-Luna, R.Rubio, R.Parra, G.Bujacz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.39 / 2.75
Space group P 43 3 2
Cell size a, b, c (Å), α, β, γ (°) 185.550, 185.550, 185.550, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 20.7

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I (pdb code 5nq7). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I, PDB code: 5nq7:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 5nq7

Go back to Copper Binding Sites List in 5nq7
Copper binding site 1 out of 4 in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu617

b:47.2
occ:1.00
NE2 A:HIS421 2.1 43.0 1.0
NE2 A:HIS132 2.1 41.2 1.0
O1 A:PER621 2.1 57.2 1.0
O2 A:PER621 2.2 45.9 1.0
NE2 A:HIS471 2.2 48.9 1.0
CE1 A:HIS421 2.9 43.4 1.0
CD2 A:HIS132 3.1 43.7 1.0
CE1 A:HIS132 3.1 42.9 1.0
CE1 A:HIS471 3.1 50.3 1.0
CD2 A:HIS421 3.2 43.1 1.0
CD2 A:HIS471 3.2 50.6 1.0
CD2 A:HIS419 3.9 45.3 1.0
CU A:CU619 4.1 45.9 1.0
ND1 A:HIS421 4.1 43.5 1.0
ND1 A:HIS132 4.2 45.8 1.0
CG A:HIS132 4.2 43.8 1.0
CG A:HIS421 4.2 42.9 1.0
ND1 A:HIS471 4.2 50.5 1.0
CG A:HIS471 4.3 48.8 1.0
CD2 A:PHE469 4.3 39.4 1.0
CD2 A:HIS85 4.4 42.9 1.0
CB A:PHE469 4.5 44.7 1.0
NE2 A:HIS85 4.6 42.5 1.0
CG2 A:VAL100 4.6 46.1 1.0
NE2 A:HIS419 4.7 44.8 1.0
CU A:CU618 4.7 45.0 1.0
NE2 A:HIS473 4.9 46.1 1.0
CG A:PHE469 4.9 40.6 1.0
CE1 A:HIS130 4.9 38.7 1.0
CD2 A:HIS473 5.0 46.6 1.0

Copper binding site 2 out of 4 in 5nq7

Go back to Copper Binding Sites List in 5nq7
Copper binding site 2 out of 4 in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu618

b:45.0
occ:1.00
ND1 A:HIS87 2.1 46.0 1.0
NE2 A:HIS130 2.2 36.7 1.0
NE2 A:HIS473 2.2 46.1 1.0
O2 A:PER621 2.6 45.9 1.0
CD2 A:HIS130 3.1 37.0 1.0
CE1 A:HIS87 3.1 48.7 1.0
O1 A:PER621 3.1 57.2 1.0
CE1 A:HIS473 3.1 45.6 1.0
CG A:HIS87 3.1 46.7 1.0
CE1 A:HIS130 3.2 38.7 1.0
CD2 A:HIS473 3.2 46.6 1.0
CB A:HIS87 3.5 43.0 1.0
CU A:CU619 3.7 45.9 1.0
CD2 A:HIS85 3.8 42.9 1.0
CZ2 A:TRP128 3.8 37.9 1.0
CE2 A:TRP128 4.1 36.7 1.0
NE1 A:TRP128 4.2 37.3 1.0
NE2 A:HIS87 4.2 48.8 1.0
CG A:HIS130 4.2 37.2 1.0
ND1 A:HIS473 4.2 50.0 1.0
CD2 A:HIS87 4.3 49.1 1.0
ND1 A:HIS130 4.3 39.2 1.0
NE2 A:HIS85 4.3 42.5 1.0
CG A:HIS473 4.3 46.3 1.0
CD2 A:HIS419 4.4 45.3 1.0
CB A:ALA262 4.5 44.2 1.0
NE2 A:HIS419 4.5 44.8 1.0
CA A:HIS87 4.5 39.4 1.0
CH2 A:TRP128 4.5 38.2 1.0
CU A:CU617 4.7 47.2 1.0
CG A:HIS85 5.0 45.0 1.0

Copper binding site 3 out of 4 in 5nq7

Go back to Copper Binding Sites List in 5nq7
Copper binding site 3 out of 4 in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu619

b:45.9
occ:1.00
NE2 A:HIS419 2.0 44.8 1.0
NE2 A:HIS85 2.1 42.5 1.0
O A:HOH750 2.2 37.8 1.0
O2 A:PER621 2.7 45.9 1.0
CD2 A:HIS419 2.7 45.3 1.0
CD2 A:HIS85 2.9 42.9 1.0
CE1 A:HIS419 3.1 45.4 1.0
CE1 A:HIS85 3.1 45.3 1.0
ND1 A:HIS87 3.3 46.0 1.0
NE2 A:HIS421 3.3 43.0 1.0
CE1 A:HIS421 3.4 43.4 1.0
CD2 A:HIS421 3.6 43.1 1.0
CG A:HIS87 3.7 46.7 1.0
CU A:CU618 3.7 45.0 1.0
ND1 A:HIS421 3.8 43.5 1.0
CE1 A:HIS87 3.8 48.7 1.0
CA A:HIS87 3.8 39.4 1.0
CG A:HIS421 3.9 42.9 1.0
CG A:HIS419 3.9 45.0 1.0
ND1 A:HIS419 4.0 44.6 1.0
CB A:HIS87 4.1 43.0 1.0
CU A:CU617 4.1 47.2 1.0
CG A:HIS85 4.1 45.0 1.0
N A:GLY88 4.1 39.4 1.0
ND1 A:HIS85 4.1 45.7 1.0
O1 A:PER621 4.2 57.2 1.0
CD2 A:HIS87 4.3 49.1 1.0
NE2 A:HIS87 4.4 48.8 1.0
C A:HIS87 4.5 40.2 1.0
CA A:HIS421 4.7 45.9 1.0
O A:HOH748 4.7 40.0 1.0
O A:HOH827 4.8 51.5 1.0
CB A:HIS421 4.8 43.7 1.0
N A:HIS87 4.9 38.6 1.0

Copper binding site 4 out of 4 in 5nq7

Go back to Copper Binding Sites List in 5nq7
Copper binding site 4 out of 4 in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu620

b:50.6
occ:1.00
ND1 A:HIS477 2.0 46.0 1.0
SG A:CYS472 2.1 49.4 1.0
ND1 A:HIS416 2.2 52.5 1.0
CG A:HIS477 3.0 49.3 1.0
CE1 A:HIS477 3.0 45.7 1.0
CG A:HIS416 3.1 52.5 1.0
CE1 A:HIS416 3.1 52.3 1.0
CB A:CYS472 3.2 44.1 1.0
CB A:HIS477 3.3 49.0 1.0
CB A:HIS416 3.4 54.5 1.0
CD2 A:PHE482 3.5 51.6 1.0
CD1 A:ILE474 3.5 44.9 1.0
CE2 A:PHE482 3.7 48.5 1.0
CB A:ILE474 3.9 44.8 1.0
CA A:HIS416 4.0 52.2 1.0
NE2 A:HIS477 4.1 48.0 1.0
CD2 A:HIS477 4.1 49.2 1.0
CG1 A:ILE474 4.2 44.1 1.0
NE2 A:HIS416 4.2 56.2 1.0
CD2 A:HIS416 4.2 54.7 1.0
CA A:CYS472 4.6 46.4 1.0
CG2 A:ILE474 4.8 45.3 1.0
CG A:PHE482 4.8 50.5 1.0
CD A:PRO417 4.9 46.1 1.0
CA A:HIS477 4.9 49.4 1.0
N A:ILE474 4.9 44.8 1.0
O A:GLY413 4.9 55.1 1.0
CA A:ILE474 5.0 44.0 1.0
O A:ILE474 5.0 43.0 1.0

Reference:

M.Orlikowska, M.De J Rostro-Alanis, A.Bujacz, C.Hernandez-Luna, R.Rubio, R.Parra, G.Bujacz. Structural Studies of Two Thermostable Laccases From the White-Rot Fungus Pycnoporus Sanguineus. Int. J. Biol. Macromol. V. 107 1629 2018.
ISSN: ISSN 1879-0003
PubMed: 29055703
DOI: 10.1016/J.IJBIOMAC.2017.10.024
Page generated: Mon Jul 14 05:05:51 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy