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Copper in PDB 5i0w: Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions

Protein crystallography data

The structure of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions, PDB code: 5i0w was solved by A.C.Chan, M.E.Murphy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.55
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 53.911, 73.229, 74.929, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 20.9

Other elements in 5i0w:

The structure of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions also contains other interesting chemical elements:

Iron (Fe) 1 atom
Chlorine (Cl) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions (pdb code 5i0w). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions, PDB code: 5i0w:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 5i0w

Go back to Copper Binding Sites List in 5i0w
Copper binding site 1 out of 3 in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu202

b:10.8
occ:0.50
CU A:CU1202 0.0 10.8 0.5
CU A:CU1202 0.8 14.0 0.5
SD A:MET88 2.0 15.3 1.0
NE2 A:HIS42 2.1 14.0 1.0
NE2 B:HIS132 2.2 14.7 1.0
NE2 A:HIS95 2.3 14.1 1.0
CE1 A:HIS42 2.8 14.7 1.0
CG A:MET88 3.0 14.9 1.0
CD2 B:HIS132 3.1 15.3 1.0
CE A:MET88 3.2 15.0 1.0
CD2 A:HIS42 3.2 14.4 1.0
CE1 A:HIS95 3.2 15.8 1.0
CE1 B:HIS132 3.2 14.6 1.0
CD2 A:HIS95 3.3 14.0 1.0
ND1 A:HIS42 4.1 15.2 1.0
CA A:GLY97 4.2 13.3 1.0
OE2 A:GLU44 4.2 18.5 1.0
CG A:HIS42 4.2 14.8 1.0
CG B:HIS132 4.4 14.3 1.0
ND1 B:HIS132 4.4 14.6 1.0
ND1 A:HIS95 4.4 15.6 1.0
CG1 A:ILE25 4.4 16.7 0.5
CB A:MET88 4.4 13.6 1.0
CG A:HIS95 4.4 13.3 1.0
CD1 A:ILE25 4.5 17.3 0.5
N A:GLY97 4.7 12.6 1.0
C A:GLY97 4.7 13.8 1.0
CG A:GLU44 4.8 17.8 1.0
CD A:GLU44 4.8 19.1 1.0

Copper binding site 2 out of 3 in 5i0w

Go back to Copper Binding Sites List in 5i0w
Copper binding site 2 out of 3 in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu202

b:14.0
occ:0.50
CU A:CU1202 0.0 14.0 0.5
CU A:CU1202 0.8 10.8 0.5
NE2 A:HIS95 1.9 14.1 1.0
NE2 A:HIS42 2.0 14.0 1.0
NE2 B:HIS132 2.0 14.7 1.0
SD A:MET88 2.7 15.3 1.0
CE1 A:HIS95 2.7 15.8 1.0
CE1 B:HIS132 2.8 14.6 1.0
CD2 A:HIS42 2.9 14.4 1.0
CD2 A:HIS95 3.0 14.0 1.0
CE1 A:HIS42 3.1 14.7 1.0
CD2 B:HIS132 3.2 15.3 1.0
OE2 A:GLU44 3.5 18.5 1.0
CG A:MET88 3.5 14.9 1.0
CE A:MET88 3.9 15.0 1.0
ND1 A:HIS95 3.9 15.6 1.0
ND1 B:HIS132 4.1 14.6 1.0
CG A:HIS95 4.1 13.3 1.0
CG A:HIS42 4.1 14.8 1.0
ND1 A:HIS42 4.1 15.2 1.0
CD A:GLU44 4.2 19.1 1.0
CG B:HIS132 4.2 14.3 1.0
CG A:GLU44 4.3 17.8 1.0
CA A:GLY97 4.4 13.3 1.0
CG1 A:ILE25 4.4 16.7 0.5
CD1 A:ILE25 4.7 17.3 0.5
O A:HOH307 4.8 26.5 1.0
CB A:MET88 4.9 13.6 1.0
N A:GLY97 4.9 12.6 1.0

Copper binding site 3 out of 3 in 5i0w

Go back to Copper Binding Sites List in 5i0w
Copper binding site 3 out of 3 in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu204

b:13.4
occ:1.00
NE2 B:HIS42 2.0 11.1 1.0
NE2 B:HIS95 2.1 11.3 1.0
NE2 A:HIS132 2.1 12.7 1.0
SD B:MET88 2.3 13.0 1.0
CE1 A:HIS132 3.0 12.5 1.0
CE1 B:HIS42 3.0 11.4 1.0
CE1 B:HIS95 3.0 12.9 1.0
CD2 B:HIS42 3.0 11.7 1.0
CD2 B:HIS95 3.1 11.8 1.0
CG B:MET88 3.2 12.0 1.0
CD2 A:HIS132 3.2 13.7 1.0
CE B:MET88 3.4 14.0 1.0
OE2 B:GLU44 4.0 15.7 1.0
ND1 B:HIS42 4.1 11.6 1.0
CG B:HIS42 4.1 11.5 1.0
ND1 B:HIS95 4.1 13.2 1.0
CA B:GLY97 4.2 11.7 1.0
ND1 A:HIS132 4.2 13.4 1.0
CG B:HIS95 4.2 11.3 1.0
CD1 B:ILE25 4.3 15.1 1.0
CG A:HIS132 4.3 13.4 1.0
CG1 B:ILE25 4.4 14.9 1.0
CB B:MET88 4.6 11.8 1.0
CG B:GLU44 4.6 14.2 1.0
CD B:GLU44 4.7 16.6 1.0
N B:GLY97 4.7 11.1 1.0
C B:GLY97 4.8 12.0 1.0

Reference:

A.C.Chan, D.Koch, G.Grass, M.E.Murphy, D.H.Nies. Metal-Handling and Receptor Recognition By Fetp and P19 From Uropathogenic Escherichia Coli and Campylobacter Jejuni To Be Published.
Page generated: Wed Jul 31 04:11:25 2024

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