Atomistry » Copper » PDB 5ce9-5i0y » 5g3g
Atomistry »
  Copper »
    PDB 5ce9-5i0y »
      5g3g »

Copper in PDB 5g3g: Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase

Protein crystallography data

The structure of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase, PDB code: 5g3g was solved by R.Ruiz-Arellano, A.Diaz, E.Rosas, E.Rudino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.71 / 1.84
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 93.744, 110.332, 96.484, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 17.6

Other elements in 5g3g:

The structure of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase also contains other interesting chemical elements:

Sodium (Na) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase (pdb code 5g3g). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase, PDB code: 5g3g:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 5g3g

Go back to Copper Binding Sites List in 5g3g
Copper binding site 1 out of 3 in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1463

b:20.0
occ:0.28
NE2 A:HIS398 1.8 8.3 1.0
NE2 A:HIS444 1.8 9.3 1.0
NE2 A:HIS137 2.4 22.8 1.0
CD2 A:HIS137 2.6 18.7 1.0
CE1 A:HIS398 2.6 8.0 1.0
CD2 A:HIS444 2.7 10.1 1.0
CE1 A:HIS444 2.9 10.5 1.0
CD2 A:HIS398 3.0 9.3 1.0
CE1 A:HIS137 3.6 28.3 1.0
CG A:HIS137 3.7 17.6 1.0
ND1 A:HIS398 3.8 10.5 1.0
CD2 A:HIS95 3.8 12.4 1.0
CD2 A:HIS396 3.8 9.2 1.0
CG A:HIS444 3.9 10.0 1.0
ND1 A:HIS444 3.9 8.0 1.0
NE2 A:HIS95 3.9 14.6 1.0
O A:HOH2150 4.0 30.5 1.0
CG A:HIS398 4.0 9.4 1.0
OE2 A:GLU451 4.0 27.1 0.4
ND1 A:HIS137 4.2 28.5 1.0
CG2 A:VAL442 4.3 4.0 1.0
NE2 A:HIS396 4.3 10.3 1.0
CG A:HIS95 4.4 8.6 1.0
CE1 A:HIS95 4.6 11.9 1.0
CD A:GLU451 4.6 14.0 0.4
OE1 A:GLU451 4.7 12.4 0.4
ND1 A:HIS95 4.8 10.8 1.0
CB A:HIS137 4.9 13.2 1.0

Copper binding site 2 out of 3 in 5g3g

Go back to Copper Binding Sites List in 5g3g
Copper binding site 2 out of 3 in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1464

b:9.6
occ:0.80
ND1 A:HIS393 2.1 9.8 1.0
ND1 A:HIS450 2.1 6.6 1.0
SG A:CYS445 2.2 10.9 1.0
CE1 A:HIS393 2.9 11.0 1.0
CE1 A:HIS450 3.1 11.6 1.0
CG A:HIS450 3.1 7.2 1.0
CG A:HIS393 3.2 8.9 1.0
CB A:CYS445 3.3 8.8 1.0
CB A:HIS450 3.4 5.0 1.0
SD A:MET455 3.4 6.6 0.4
CB A:HIS393 3.7 10.5 1.0
CE A:MET455 3.8 14.5 0.4
SD A:MET455 3.9 19.9 0.6
CD1 A:ILE447 3.9 9.1 1.0
CB A:ILE447 4.0 5.7 1.0
CA A:HIS393 4.0 6.2 1.0
NE2 A:HIS393 4.1 13.3 1.0
NE2 A:HIS450 4.2 6.7 1.0
CD2 A:HIS393 4.2 6.7 1.0
CD2 A:HIS450 4.2 10.0 1.0
CG1 A:ILE447 4.4 8.8 1.0
O A:ASP392 4.4 6.3 1.0
CD A:PRO394 4.5 4.4 1.0
CE A:MET455 4.6 8.4 0.6
CA A:CYS445 4.6 5.1 1.0
O A:ILE447 4.7 7.6 1.0
N A:ILE447 4.8 5.1 1.0
CG2 A:ILE447 4.8 6.9 1.0
CA A:ILE447 4.9 7.7 1.0
CA A:HIS450 4.9 8.0 1.0
CG A:MET455 4.9 14.0 0.4
C A:HIS393 5.0 5.5 1.0

Copper binding site 3 out of 3 in 5g3g

Go back to Copper Binding Sites List in 5g3g
Copper binding site 3 out of 3 in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1465

b:9.7
occ:1.00
ND1 A:HIS97 2.0 7.0 1.0
NE2 A:HIS135 2.1 8.8 1.0
NE2 A:HIS446 2.1 7.3 1.0
CD2 A:HIS135 2.9 5.6 1.0
CE1 A:HIS97 3.0 7.9 1.0
CE1 A:HIS446 3.0 5.8 1.0
CG A:HIS97 3.0 8.6 1.0
CE1 A:HIS135 3.1 8.9 1.0
CD2 A:HIS446 3.2 8.2 1.0
CB A:HIS97 3.4 7.3 1.0
CZ2 A:TRP133 3.5 5.7 1.0
CD2 A:HIS95 3.7 12.4 1.0
CE2 A:TRP133 3.8 5.4 1.0
NE1 A:TRP133 4.0 5.7 1.0
NE2 A:HIS97 4.1 7.9 1.0
CG A:HIS135 4.1 6.2 1.0
CD2 A:HIS97 4.1 10.7 1.0
ND1 A:HIS446 4.2 7.7 1.0
ND1 A:HIS135 4.2 6.8 1.0
NE2 A:HIS95 4.3 14.6 1.0
CG A:HIS446 4.3 5.3 1.0
CH2 A:TRP133 4.3 4.9 1.0
NE2 A:HIS396 4.4 10.3 1.0
CD2 A:HIS396 4.5 9.2 1.0
CA A:HIS97 4.6 5.9 1.0
CD2 A:TRP133 4.8 3.8 1.0
CG A:HIS95 4.9 8.6 1.0
CD1 A:TRP133 4.9 3.4 1.0

Reference:

R.Ruiz-Arellano, A.Diaz, E.Rosas, V.Stojanoff, E.Rudino. Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase To Be Published.
Page generated: Mon Jul 14 04:37:02 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy