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Copper in PDB 5f7a: Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K
Enzymatic activity of Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K
All present enzymatic activity of Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K:
1.7.2.1;
1.7.2.1;
Protein crystallography data
The structure of Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K, PDB code: 5f7a
was solved by
Y.Fukuda,
K.M.Tse,
T.Nakane,
T.Nakatsu,
M.Suzuki,
M.Sugahara,
S.Inoue,
T.Masuda,
F.Yumoto,
N.Matsugaki,
E.Nango,
K.Tono,
Y.Joti,
T.Kameshima,
C.Song,
T.Hatsui,
M.Yabashi,
O.Nureki,
M.E.P.Murphy,
T.Inoue,
S.Iwata,
E.Mizohata,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.89 / 1.54 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 62.860, 103.686, 146.972, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 15.1 / 18 |
Copper Binding Sites:
The binding sites of Copper atom in the Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K
(pdb code 5f7a). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K, PDB code: 5f7a:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Copper where determined in the Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K, PDB code: 5f7a:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;
Copper binding site 1 out of 6 in 5f7a
Go back to
Copper Binding Sites List in 5f7a
Copper binding site 1 out
of 6 in the Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K within 5.0Å range:
|
Copper binding site 2 out of 6 in 5f7a
Go back to
Copper Binding Sites List in 5f7a
Copper binding site 2 out
of 6 in the Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K within 5.0Å range:
|
Copper binding site 3 out of 6 in 5f7a
Go back to
Copper Binding Sites List in 5f7a
Copper binding site 3 out
of 6 in the Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K within 5.0Å range:
|
Copper binding site 4 out of 6 in 5f7a
Go back to
Copper Binding Sites List in 5f7a
Copper binding site 4 out
of 6 in the Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K within 5.0Å range:
|
Copper binding site 5 out of 6 in 5f7a
Go back to
Copper Binding Sites List in 5f7a
Copper binding site 5 out
of 6 in the Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K within 5.0Å range:
|
Copper binding site 6 out of 6 in 5f7a
Go back to
Copper Binding Sites List in 5f7a
Copper binding site 6 out
of 6 in the Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Nitrite Complex Structure of Copper Nitrite Reductase From Alcaligenes Faecalis Determined at 293 K within 5.0Å range:
|
Reference:
Y.Fukuda,
K.M.Tse,
T.Nakane,
T.Nakatsu,
M.Suzuki,
M.Sugahara,
S.Inoue,
T.Masuda,
F.Yumoto,
N.Matsugaki,
E.Nango,
K.Tono,
Y.Joti,
T.Kameshima,
C.Song,
T.Hatsui,
M.Yabashi,
O.Nureki,
M.E.P.Murphy,
T.Inoue,
S.Iwata,
E.Mizohata.
Redox-Coupled Proton Transfer Mechanism in Nitrite Reductase Revealed By Femtosecond Crystallography Proc.Natl.Acad.Sci.Usa V. 113 2928 2016.
ISSN: ESSN 1091-6490
PubMed: 26929369
DOI: 10.1073/PNAS.1517770113
Page generated: Mon Jul 14 04:32:44 2025
ISSN: ESSN 1091-6490
PubMed: 26929369
DOI: 10.1073/PNAS.1517770113
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