Copper in PDB 4yvn: Crystal Structure of Cota Laccase Complexed with Abts at A Novel Binding Site

The structure of Crystal Structure of Cota Laccase Complexed with Abts at A Novel Binding Site, PDB code: 4yvn was solved by Z.C.Liu, T.Xie, G.G.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.40 / 2.30
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	101.993, 101.993, 135.791, 90.00, 90.00, 120.00
R / Rfree (%)	15.8 / 19.4

The binding sites of Copper atom in the Crystal Structure of Cota Laccase Complexed with Abts at A Novel Binding Site (pdb code 4yvn). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Crystal Structure of Cota Laccase Complexed with Abts at A Novel Binding Site, PDB code: 4yvn:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in the Crystal Structure of Cota Laccase Complexed with Abts at A Novel Binding Site


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Cota Laccase Complexed with Abts at A Novel Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu601 b:14.9 occ:0.93 ND1 A:HIS419 2.0 20.6 1.0 ND1 A:HIS497 2.0 16.6 1.0 SG A:CYS492 2.2 15.0 1.0 CE1 A:HIS419 2.8 19.6 1.0 CE1 A:HIS497 3.0 16.4 1.0 CG A:HIS497 3.0 16.0 1.0 CG A:HIS419 3.1 19.4 1.0 SD A:MET502 3.1 18.2 1.0 CB A:CYS492 3.2 14.1 1.0 CB A:HIS497 3.4 16.6 1.0 CB A:HIS419 3.5 18.5 1.0 CE A:MET502 4.0 20.7 1.0 NE2 A:HIS419 4.0 20.0 1.0 CD1 A:ILE494 4.0 12.9 1.0 NE2 A:HIS497 4.1 16.0 1.0 CB A:ILE494 4.1 12.9 1.0 CD2 A:HIS419 4.2 20.3 1.0 CA A:HIS419 4.2 18.3 1.0 CD2 A:HIS497 4.2 15.9 1.0 CG1 A:ILE494 4.4 12.9 1.0 CA A:CYS492 4.6 14.1 1.0 CG A:MET502 4.6 16.3 1.0 O A:HOH803 4.7 34.5 1.0 CD A:PRO420 4.8 15.8 1.0 N A:ILE494 4.9 13.4 1.0 CA A:HIS497 4.9 15.3 1.0 O A:THR418 4.9 18.5 1.0 CG2 A:ILE494 4.9 12.6 1.0

Copper binding site 2 out of 3 in the Crystal Structure of Cota Laccase Complexed with Abts at A Novel Binding Site


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Cota Laccase Complexed with Abts at A Novel Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu602 b:16.6 occ:0.26 NE2 A:HIS491 1.9 14.6 1.0 NE2 A:HIS424 2.1 11.6 1.0 NE2 A:HIS155 2.2 20.1 1.0 O A:HOH1008 2.2 19.0 1.0 CE1 A:HIS491 2.8 14.3 1.0 CE1 A:HIS424 2.8 11.6 1.0 CD2 A:HIS491 2.9 14.4 1.0 CD2 A:HIS155 3.0 20.2 1.0 CD2 A:HIS424 3.2 11.8 1.0 CE1 A:HIS155 3.3 20.2 1.0 CD2 A:HIS422 3.4 17.2 1.0 O A:HOH868 3.7 33.5 1.0 ND1 A:HIS491 3.9 14.5 1.0 CD2 A:HIS105 3.9 11.9 1.0 CG A:HIS491 4.0 14.1 1.0 NE2 A:HIS422 4.0 18.7 1.0 ND1 A:HIS424 4.0 11.7 1.0 NE2 A:HIS105 4.1 12.8 1.0 CG2 A:VAL489 4.2 16.7 1.0 CG A:HIS155 4.2 18.2 1.0 CG A:HIS424 4.2 11.9 1.0 ND1 A:HIS155 4.3 21.0 1.0 CU A:CU603 4.5 14.0 0.3 CG A:HIS422 4.6 15.7 1.0 CG A:HIS105 4.6 11.0 1.0 OE2 A:GLU498 4.6 16.3 1.0 O A:HOH904 4.7 24.9 1.0 CD2 A:HIS493 4.7 14.7 1.0 CE1 A:HIS105 4.8 12.1 1.0 NE2 A:HIS493 4.9 14.5 1.0 OE1 A:GLU498 4.9 15.8 1.0

Copper binding site 3 out of 3 in the Crystal Structure of Cota Laccase Complexed with Abts at A Novel Binding Site


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Cota Laccase Complexed with Abts at A Novel Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu603 b:14.0 occ:0.33 ND1 A:HIS107 1.7 12.5 1.0 NE2 A:HIS153 2.2 13.0 1.0 O A:HOH1008 2.3 19.0 1.0 NE2 A:HIS493 2.4 14.5 1.0 CE1 A:HIS107 2.4 12.2 1.0 CG A:HIS107 2.9 11.7 1.0 CE1 A:HIS153 3.0 12.6 1.0 CD2 A:HIS493 3.1 14.7 1.0 CD2 A:HIS153 3.3 12.6 1.0 CE1 A:HIS493 3.4 14.7 1.0 CB A:HIS107 3.5 11.1 1.0 NE2 A:HIS107 3.6 12.1 1.0 CD2 A:HIS105 3.8 11.9 1.0 CD2 A:HIS107 3.9 12.0 1.0 CZ2 A:TRP151 4.0 10.0 1.0 O A:HOH868 4.0 33.5 1.0 ND1 A:HIS153 4.1 13.2 1.0 CD2 A:HIS422 4.2 17.2 1.0 CE2 A:TRP151 4.2 9.9 1.0 CB A:ALA297 4.3 11.7 1.0 NE2 A:HIS422 4.3 18.7 1.0 NE1 A:TRP151 4.3 10.2 1.0 CG A:HIS493 4.3 14.7 1.0 CG A:HIS153 4.3 12.6 1.0 ND1 A:HIS493 4.4 15.1 1.0 NE2 A:HIS105 4.4 12.8 1.0 CU A:CU602 4.5 16.6 0.3 CA A:HIS107 4.6 11.1 1.0 CH2 A:TRP151 4.7 10.5 1.0 CG A:HIS422 5.0 15.7 1.0

Z.Liu, T.Xie, Q.Zhong, G.Wang. Crystal Structure of Cota Laccase Complexed with 2,2-Azinobis-(3-Ethylbenzothiazoline-6-Sulfonate) at A Novel Binding Site Acta Crystallogr.,Sect.F V. 72 328 2016.
ISSN: ESSN 2053-230X
PubMed: 27050268
DOI: 10.1107/S2053230X1600426X