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Copper in PDB 4bte: Dj-1 Cu(I) Complex

Protein crystallography data

The structure of Dj-1 Cu(I) Complex, PDB code: 4bte was solved by M.R.A.Puno, M.Odell, P.C.E.Moody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.64 / 1.38
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 75.257, 75.257, 75.354, 90.00, 90.00, 120.00
R / Rfree (%) 11.841 / 14.981

Copper Binding Sites:

The binding sites of Copper atom in the Dj-1 Cu(I) Complex (pdb code 4bte). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Dj-1 Cu(I) Complex, PDB code: 4bte:

Copper binding site 1 out of 1 in 4bte

Go back to Copper Binding Sites List in 4bte
Copper binding site 1 out of 1 in the Dj-1 Cu(I) Complex


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Dj-1 Cu(I) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1189

b:66.6
occ:0.40
SG A:CYS53 1.9 32.7 1.0
CB A:CYS53 3.4 16.0 1.0
N A:CYS53 3.8 11.9 1.0
CA A:CYS53 3.9 12.5 1.0
CB A:PRO43 4.0 17.6 1.0
CG A:PRO43 4.1 23.2 1.0
C A:ILE52 4.3 12.6 1.0
CG1 A:VAL51 4.4 13.8 1.0
O A:VAL51 4.5 11.5 1.0
C A:VAL51 4.9 11.0 1.0
O A:ILE52 4.9 13.2 1.0
CA A:ILE52 4.9 10.5 1.0
CA A:PRO43 5.0 14.5 1.0

Reference:

M.R.Puno, N.A.Patel, S.G.Moller, C.V.Robinson, P.C.E.Moody, M.Odell. Structure of Cu(I)-Bound Dj-1 Reveals A Biscysteinate Metal Binding Site at the Homodimer Interface: Insights Into Mutational Inactivation of Dj-1 in Parkinsonism. J.Am.Chem.Soc. V. 135 15974 2013.
ISSN: ISSN 0002-7863
PubMed: 24144264
DOI: 10.1021/JA406010M
Page generated: Wed Jul 31 02:39:20 2024

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