Atomistry » Copper » PDB 3iea-3mn0 » 3kw7
Atomistry »
  Copper »
    PDB 3iea-3mn0 »
      3kw7 »

Copper in PDB 3kw7: Crystal Structure of Lacb From Trametes Sp. AH28-2

Enzymatic activity of Crystal Structure of Lacb From Trametes Sp. AH28-2

All present enzymatic activity of Crystal Structure of Lacb From Trametes Sp. AH28-2:
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Lacb From Trametes Sp. AH28-2, PDB code: 3kw7 was solved by H.H.Ge, M.K.Teng, L.W.Niu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 3.44
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 98.778, 98.778, 149.960, 90.00, 90.00, 90.00
R / Rfree (%) 22.3 / 29.2

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Lacb From Trametes Sp. AH28-2 (pdb code 3kw7). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the Crystal Structure of Lacb From Trametes Sp. AH28-2, PDB code: 3kw7:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in 3kw7

Go back to Copper Binding Sites List in 3kw7
Copper binding site 1 out of 8 in the Crystal Structure of Lacb From Trametes Sp. AH28-2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Lacb From Trametes Sp. AH28-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu601

b:46.9
occ:1.00
 ND1 A:HIS461 2.0 35.8 1.0
SG A:CYS456 2.1 41.7 1.0
ND1 A:HIS400 2.1 34.6 1.0
CE1 A:HIS461 3.0 36.7 1.0
CG A:HIS461 3.0 35.2 1.0
CE1 A:HIS400 3.1 36.3 1.0
CG A:HIS400 3.1 35.8 1.0
CB A:CYS456 3.2 39.0 1.0
CB A:HIS461 3.3 35.9 1.0
CD1 A:ILE458 3.3 33.0 1.0
CB A:HIS400 3.4 36.9 1.0
CD2 A:PHE466 3.8 28.5 1.0
CB A:ILE458 3.9 36.4 1.0
CE2 A:PHE466 4.1 28.5 1.0
CG1 A:ILE458 4.1 34.0 1.0
CA A:HIS400 4.1 36.9 1.0
NE2 A:HIS461 4.1 36.6 1.0
CD2 A:HIS461 4.2 34.6 1.0
NE2 A:HIS400 4.2 36.9 1.0
CD2 A:HIS400 4.3 35.2 1.0
CA A:CYS456 4.6 38.9 1.0
CG2 A:ILE458 4.7 36.4 1.0
CD A:PRO401 4.7 35.5 1.0
N A:ILE458 4.8 37.6 1.0
CA A:HIS461 4.8 35.9 1.0
O A:ILE458 4.8 37.7 1.0
CA A:ILE458 4.9 36.9 1.0
C A:HIS400 5.0 36.4 1.0
C A:CYS456 5.0 38.5 1.0

Copper binding site 2 out of 8 in 3kw7

Go back to Copper Binding Sites List in 3kw7
Copper binding site 2 out of 8 in the Crystal Structure of Lacb From Trametes Sp. AH28-2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Lacb From Trametes Sp. AH28-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu602

b:58.4
occ:1.00
 NE2 A:HIS403 1.9 33.8 1.0
NE2 A:HIS64 2.0 30.0 1.0
CE1 A:HIS403 2.7 33.6 1.0
CE1 A:HIS64 2.8 29.5 1.0
CD2 A:HIS403 2.9 35.5 1.0
CD2 A:HIS64 3.0 31.0 1.0
ND1 A:HIS66 3.4 32.2 1.0
CE1 A:HIS405 3.4 39.6 1.0
ND1 A:HIS405 3.5 37.6 1.0
NE2 A:HIS405 3.6 39.2 1.0
CG A:HIS66 3.7 32.5 1.0
CA A:HIS66 3.7 30.9 1.0
CE1 A:HIS66 3.8 33.2 1.0
CG A:HIS405 3.8 35.9 1.0
ND1 A:HIS403 3.8 34.5 1.0
N A:GLY67 3.9 31.0 1.0
CD2 A:HIS405 3.9 38.6 1.0
CG A:HIS403 3.9 34.3 1.0
ND1 A:HIS64 4.0 30.2 1.0
CG A:HIS64 4.1 30.4 1.0
CB A:HIS66 4.1 31.0 1.0
CD2 A:HIS66 4.2 33.7 1.0
NE2 A:HIS66 4.2 34.0 1.0
CU A:CU604 4.2 61.1 1.0
C A:HIS66 4.3 30.5 1.0
CU A:CU603 4.4 53.3 1.0
CA A:HIS405 4.5 33.2 1.0
CB A:HIS405 4.7 33.7 1.0
N A:HIS66 4.7 30.7 1.0
CA A:GLY67 5.0 32.3 1.0
O A:TRP65 5.0 31.2 1.0

Copper binding site 3 out of 8 in 3kw7

Go back to Copper Binding Sites List in 3kw7
Copper binding site 3 out of 8 in the Crystal Structure of Lacb From Trametes Sp. AH28-2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Lacb From Trametes Sp. AH28-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu603

b:53.3
occ:1.00
 NE2 A:HIS405 1.9 39.2 1.0
NE2 A:HIS455 1.9 42.2 1.0
NE2 A:HIS111 2.0 36.2 1.0
CE1 A:HIS405 2.6 39.6 1.0
CE1 A:HIS455 2.8 42.3 1.0
CD2 A:HIS455 3.0 40.9 1.0
CD2 A:HIS111 3.0 32.6 1.0
CE1 A:HIS111 3.1 36.4 1.0
CD2 A:HIS405 3.1 38.6 1.0
ND1 A:HIS405 3.8 37.6 1.0
CD2 A:HIS403 3.9 35.5 1.0
ND1 A:HIS455 3.9 40.5 1.0
CG A:HIS455 4.1 38.4 1.0
CG A:HIS405 4.1 35.9 1.0
ND1 A:HIS111 4.2 32.3 1.0
CG A:HIS111 4.2 32.3 1.0
CU A:CU602 4.4 58.4 1.0
CD2 A:HIS64 4.4 31.0 1.0
NE2 A:HIS403 4.5 33.8 1.0
NE2 A:HIS64 4.6 30.0 1.0
CD2 A:PHE453 4.6 30.4 1.0
NE2 A:HIS457 4.6 45.4 1.0
CE1 A:HIS109 4.7 33.1 1.0
CD2 A:HIS457 4.8 44.7 1.0
CG A:PRO79 4.8 36.6 1.0
CB A:PHE453 4.8 32.9 1.0
CD1 A:LEU462 4.9 37.8 1.0
CG A:HIS64 4.9 30.4 1.0
CU A:CU604 5.0 61.1 1.0

Copper binding site 4 out of 8 in 3kw7

Go back to Copper Binding Sites List in 3kw7
Copper binding site 4 out of 8 in the Crystal Structure of Lacb From Trametes Sp. AH28-2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Lacb From Trametes Sp. AH28-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu604

b:61.1
occ:1.00
 ND1 A:HIS66 1.9 32.2 1.0
NE2 A:HIS457 2.0 45.4 1.0
NE2 A:HIS109 2.1 33.1 1.0
CE1 A:HIS66 2.7 33.2 1.0
CE1 A:HIS457 2.8 46.0 1.0
CD2 A:HIS109 2.9 34.1 1.0
CG A:HIS66 3.0 32.5 1.0
CD2 A:HIS457 3.0 44.7 1.0
CE1 A:HIS109 3.1 33.1 1.0
CZ2 A:TRP107 3.5 35.1 1.0
CB A:HIS66 3.5 31.0 1.0
CE2 A:TRP107 3.8 36.4 1.0
NE2 A:HIS66 3.9 34.0 1.0
ND1 A:HIS457 4.0 45.0 1.0
NE1 A:TRP107 4.0 35.3 1.0
CD2 A:HIS64 4.0 31.0 1.0
CG A:HIS109 4.0 33.5 1.0
CD2 A:HIS66 4.0 33.7 1.0
ND1 A:HIS109 4.1 32.9 1.0
CB A:SER241 4.1 41.6 1.0
CG A:HIS457 4.1 41.8 1.0
CU A:CU602 4.2 58.4 1.0
CH2 A:TRP107 4.2 34.6 1.0
NE2 A:HIS64 4.4 30.0 1.0
CA A:HIS66 4.6 30.9 1.0
CD2 A:HIS403 4.6 35.5 1.0
NE2 A:HIS403 4.7 33.8 1.0
OG A:SER241 4.7 40.2 1.0
CD2 A:TRP107 4.8 37.4 1.0
CU A:CU603 5.0 53.3 1.0
CD1 A:TRP107 5.0 35.9 1.0

Copper binding site 5 out of 8 in 3kw7

Go back to Copper Binding Sites List in 3kw7
Copper binding site 5 out of 8 in the Crystal Structure of Lacb From Trametes Sp. AH28-2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of Lacb From Trametes Sp. AH28-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu601

b:52.7
occ:1.00
 ND1 B:HIS400 2.1 36.8 1.0
SG B:CYS456 2.1 39.4 1.0
ND1 B:HIS461 2.1 37.0 1.0
CE1 B:HIS400 3.0 38.7 1.0
CG B:HIS400 3.0 37.6 1.0
CE1 B:HIS461 3.1 38.1 1.0
CG B:HIS461 3.1 36.4 1.0
CB B:CYS456 3.2 38.8 1.0
CB B:HIS400 3.3 38.4 1.0
CD1 B:ILE458 3.4 38.7 1.0
CB B:HIS461 3.4 36.3 1.0
CD2 B:PHE466 3.8 26.3 1.0
CB B:ILE458 4.0 38.1 1.0
CE2 B:PHE466 4.0 25.5 1.0
CA B:HIS400 4.0 38.4 1.0
NE2 B:HIS400 4.2 40.0 1.0
CG1 B:ILE458 4.2 37.4 1.0
NE2 B:HIS461 4.2 38.2 1.0
CD2 B:HIS400 4.2 37.8 1.0
CD2 B:HIS461 4.2 36.7 1.0
CA B:CYS456 4.6 39.0 1.0
CD B:PRO401 4.6 36.3 1.0
CG2 B:ILE458 4.8 37.4 1.0
C B:HIS400 4.9 37.6 1.0
N B:ILE458 4.9 38.8 1.0
CA B:HIS461 4.9 36.2 1.0
CA B:ILE458 5.0 38.4 1.0

Copper binding site 6 out of 8 in 3kw7

Go back to Copper Binding Sites List in 3kw7
Copper binding site 6 out of 8 in the Crystal Structure of Lacb From Trametes Sp. AH28-2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of Lacb From Trametes Sp. AH28-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu602

b:61.0
occ:1.00
 NE2 B:HIS64 1.9 32.4 1.0
NE2 B:HIS403 1.9 36.6 1.0
CE1 B:HIS64 2.7 32.3 1.0
CE1 B:HIS403 2.7 37.2 1.0
CD2 B:HIS64 2.9 32.5 1.0
CD2 B:HIS403 3.0 38.0 1.0
CE1 B:HIS405 3.1 44.4 1.0
ND1 B:HIS405 3.2 42.3 1.0
NE2 B:HIS405 3.3 44.0 1.0
CG B:HIS405 3.4 39.7 1.0
CD2 B:HIS405 3.5 42.7 1.0
ND1 B:HIS66 3.8 30.8 1.0
ND1 B:HIS64 3.8 30.8 1.0
ND1 B:HIS403 3.9 37.1 1.0
CA B:HIS66 3.9 32.2 1.0
N B:GLY67 4.0 33.0 1.0
CG B:HIS64 4.0 31.1 1.0
CG B:HIS66 4.0 32.3 1.0
CG B:HIS403 4.0 36.3 1.0
CA B:HIS405 4.2 36.8 1.0
CE1 B:HIS66 4.2 34.2 1.0
CB B:HIS405 4.3 37.1 1.0
CB B:HIS66 4.4 32.3 1.0
CU B:CU603 4.4 51.3 1.0
CD2 B:HIS66 4.5 33.7 1.0
C B:HIS66 4.5 32.5 1.0
CU B:CU604 4.5 67.7 1.0
NE2 B:HIS66 4.6 34.9 1.0
N B:HIS405 4.8 35.2 1.0
N B:HIS66 4.9 31.5 1.0
O B:TRP65 4.9 31.4 1.0

Copper binding site 7 out of 8 in 3kw7

Go back to Copper Binding Sites List in 3kw7
Copper binding site 7 out of 8 in the Crystal Structure of Lacb From Trametes Sp. AH28-2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Crystal Structure of Lacb From Trametes Sp. AH28-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu603

b:51.3
occ:1.00
 NE2 B:HIS455 1.8 43.9 1.0
NE2 B:HIS405 1.8 44.0 1.0
NE2 B:HIS111 2.1 44.0 1.0
CE1 B:HIS405 2.5 44.4 1.0
CD2 B:HIS455 2.8 43.4 1.0
CE1 B:HIS455 2.8 43.4 1.0
CE1 B:HIS111 3.0 44.8 1.0
CD2 B:HIS405 3.0 42.7 1.0
CD2 B:HIS111 3.1 41.1 1.0
ND1 B:HIS405 3.7 42.3 1.0
ND1 B:HIS455 3.9 42.3 1.0
CD2 B:HIS403 3.9 38.0 1.0
CG B:HIS455 3.9 40.0 1.0
CG B:HIS405 4.0 39.7 1.0
ND1 B:HIS111 4.1 40.6 1.0
CD2 B:PHE453 4.2 30.3 1.0
CG B:HIS111 4.2 38.9 1.0
CD2 B:HIS64 4.4 32.5 1.0
CU B:CU602 4.4 61.0 1.0
NE2 B:HIS403 4.4 36.6 1.0
CB B:PHE453 4.6 32.9 1.0
NE2 B:HIS64 4.6 32.4 1.0
NE2 B:HIS457 4.7 45.7 1.0
CE1 B:HIS109 4.8 33.0 1.0
CG B:PHE453 4.8 32.1 1.0
CG B:PRO79 4.8 32.9 1.0
CD2 B:HIS457 4.8 44.5 1.0
CD1 B:LEU462 4.8 38.1 1.0

Copper binding site 8 out of 8 in 3kw7

Go back to Copper Binding Sites List in 3kw7
Copper binding site 8 out of 8 in the Crystal Structure of Lacb From Trametes Sp. AH28-2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Crystal Structure of Lacb From Trametes Sp. AH28-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu604

b:67.7
occ:1.00
 NE2 B:HIS457 1.9 45.7 1.0
ND1 B:HIS66 1.9 30.8 1.0
NE2 B:HIS109 2.2 32.1 1.0
CE1 B:HIS457 2.7 45.5 1.0
CE1 B:HIS66 2.7 34.2 1.0
CD2 B:HIS109 2.9 33.3 1.0
CD2 B:HIS457 2.9 44.5 1.0
CG B:HIS66 3.0 32.3 1.0
CE1 B:HIS109 3.2 33.0 1.0
CZ2 B:TRP107 3.4 33.6 1.0
CB B:HIS66 3.5 32.3 1.0
CE2 B:TRP107 3.8 34.1 1.0
ND1 B:HIS457 3.8 44.5 1.0
NE2 B:HIS66 3.9 34.9 1.0
NE1 B:TRP107 3.9 33.6 1.0
CG B:HIS457 4.0 42.1 1.0
CB B:SER241 4.0 41.1 1.0
CG B:HIS109 4.1 32.7 1.0
CD2 B:HIS66 4.1 33.7 1.0
CD2 B:HIS64 4.1 32.5 1.0
ND1 B:HIS109 4.1 31.7 1.0
CH2 B:TRP107 4.2 33.9 1.0
CD2 B:HIS403 4.3 38.0 1.0
NE2 B:HIS403 4.5 36.6 1.0
CU B:CU602 4.5 61.0 1.0
NE2 B:HIS64 4.6 32.4 1.0
CA B:HIS66 4.7 32.2 1.0
OG B:SER241 4.7 38.3 1.0
CD2 B:TRP107 4.8 35.6 1.0
CD1 B:TRP107 4.9 35.3 1.0

Reference:

H.H.Ge, Y.X.Gao, Y.Z.Hong, M.Zhang, Y.Z.Xiao, M.K.Teng, L.W.Niu. Structure of Native Laccase B From Trametes Sp. AH28-2 Acta Crystallogr.,Sect.F V. 66 254 2010.
ISSN: ESSN 1744-3091
PubMed: 20208154
DOI: 10.1107/S1744309110000084
Page generated: Wed Jul 31 01:15:24 2024

Last articles

Br in 4DVR
Br in 4DNF
Br in 4DMA
Br in 4DMN
Br in 4D4M
Br in 4D4J
Br in 4DA8
Br in 4D45
Br in 4CV5
Br in 4D2W
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy