Atomistry » Copper » PDB 1rju-1tl4 » 1rzq
Atomistry »
  Copper »
    PDB 1rju-1tl4 »
      1rzq »

Copper in PDB 1rzq: Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0

Enzymatic activity of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0

All present enzymatic activity of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0:
1.7.2.1;

Protein crystallography data

The structure of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0, PDB code: 1rzq was solved by H.T.Li, C.Wang, T.Chang, W.C.Chang, M.Y.Liu, J.Le Gall, L.L.Gui, J.P.Zhang, X.M.An, W.R.Chang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 99.020, 117.440, 122.800, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 20.8

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 (pdb code 1rzq). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0, PDB code: 1rzq:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in 1rzq

Go back to Copper Binding Sites List in 1rzq
Copper binding site 1 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:27.4
occ:1.00
 ND1 A:HIS145 2.1 15.7 1.0
ND1 A:HIS95 2.2 18.7 1.0
SG A:CYS136 2.2 22.0 1.0
SD A:MET150 2.4 23.5 1.0
CE1 A:HIS145 3.0 16.1 1.0
CE1 A:HIS95 3.1 20.6 1.0
CB A:CYS136 3.1 17.6 1.0
CG A:HIS145 3.2 17.1 1.0
CG A:HIS95 3.2 20.1 1.0
CE A:MET150 3.3 25.9 1.0
CB A:HIS95 3.6 20.0 1.0
CB A:HIS145 3.6 14.3 1.0
CG A:MET150 4.0 21.1 1.0
CA A:HIS95 4.0 19.7 1.0
CG A:PRO138 4.1 21.5 1.0
NE2 A:HIS145 4.2 16.3 1.0
NE2 A:HIS95 4.2 21.6 1.0
CD2 A:HIS145 4.3 16.3 1.0
O A:LEU94 4.3 19.9 1.0
CD2 A:HIS95 4.3 20.9 1.0
SD A:MET62 4.3 18.2 1.0
CB A:MET150 4.3 15.7 1.0
CD A:PRO138 4.6 19.6 1.0
CA A:CYS136 4.6 16.7 1.0
CA A:HIS145 4.7 15.9 1.0
N A:ASN96 4.8 20.0 1.0
CB A:MET62 4.8 16.0 1.0
N A:HIS95 5.0 20.1 1.0

Copper binding site 2 out of 6 in 1rzq

Go back to Copper Binding Sites List in 1rzq
Copper binding site 2 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:19.4
occ:1.00
 O A:HOH3006 2.0 11.2 1.0
NE2 A:HIS100 2.0 15.2 1.0
NE2 B:HIS306 2.1 12.4 1.0
NE2 A:HIS135 2.2 16.4 1.0
CE1 A:HIS100 2.9 14.3 1.0
CE1 B:HIS306 3.0 11.5 1.0
CD2 A:HIS100 3.1 12.8 1.0
CD2 A:HIS135 3.1 14.3 1.0
CD2 B:HIS306 3.2 11.6 1.0
CE1 A:HIS135 3.2 15.3 1.0
OD2 A:ASP98 3.2 33.1 1.0
ND1 A:HIS100 4.1 15.8 1.0
CG A:HIS100 4.2 15.1 1.0
ND1 B:HIS306 4.2 10.6 1.0
NE2 B:HIS255 4.2 13.4 1.0
CG A:HIS135 4.3 14.9 1.0
CG B:HIS306 4.3 13.2 1.0
ND1 A:HIS135 4.3 15.6 1.0
CG A:ASP98 4.3 28.4 1.0
CE1 B:HIS255 4.4 15.2 1.0
CD2 B:HIS255 4.5 12.3 1.0
ND1 B:HIS255 4.8 14.3 1.0
CG B:HIS255 4.9 14.7 1.0
OD1 A:ASP98 5.0 25.9 1.0
CD2 B:LEU308 5.0 13.2 1.0
O B:HOH3028 5.0 15.2 1.0

Copper binding site 3 out of 6 in 1rzq

Go back to Copper Binding Sites List in 1rzq
Copper binding site 3 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu501

b:27.2
occ:1.00
 ND1 B:HIS95 2.1 24.7 1.0
ND1 B:HIS145 2.2 23.2 1.0
SG B:CYS136 2.3 24.0 1.0
SD B:MET150 2.4 24.1 1.0
CE1 B:HIS95 3.0 22.8 1.0
CE1 B:HIS145 3.1 22.8 1.0
CB B:CYS136 3.2 20.9 1.0
CG B:HIS95 3.2 23.5 1.0
CE B:MET150 3.2 24.9 1.0
CG B:HIS145 3.3 22.5 1.0
CB B:HIS95 3.6 23.6 1.0
CB B:HIS145 3.6 19.5 1.0
CG B:MET150 3.8 21.8 1.0
CA B:HIS95 4.0 23.8 1.0
NE2 B:HIS95 4.1 24.3 1.0
CG B:PRO138 4.2 27.1 1.0
CD2 B:HIS95 4.2 23.6 1.0
O B:LEU94 4.2 22.5 1.0
NE2 B:HIS145 4.3 22.5 1.0
CB B:MET150 4.3 19.3 1.0
CD2 B:HIS145 4.4 22.4 1.0
SD B:MET62 4.4 21.4 1.0
CA B:CYS136 4.6 18.7 1.0
CD B:PRO138 4.6 23.7 1.0
CA B:HIS145 4.8 18.6 1.0
CB B:MET62 4.8 20.7 1.0
N B:ASN96 4.8 24.1 1.0

Copper binding site 4 out of 6 in 1rzq

Go back to Copper Binding Sites List in 1rzq
Copper binding site 4 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu502

b:21.2
occ:1.00
 O B:HOH3005 2.0 10.0 1.0
NE2 B:HIS100 2.1 17.4 1.0
NE2 B:HIS135 2.1 15.3 1.0
NE2 C:HIS306 2.2 16.8 1.0
CE1 B:HIS100 2.9 15.7 1.0
CE1 C:HIS306 3.1 15.1 1.0
CD2 B:HIS135 3.1 13.3 1.0
CD2 B:HIS100 3.1 16.4 1.0
CE1 B:HIS135 3.1 13.6 1.0
CD2 C:HIS306 3.2 15.1 1.0
OD2 B:ASP98 3.3 33.7 1.0
ND1 B:HIS100 4.1 15.9 1.0
NE2 C:HIS255 4.2 18.0 1.0
CG B:HIS100 4.2 16.5 1.0
ND1 B:HIS135 4.2 14.9 1.0
ND1 C:HIS306 4.2 16.1 1.0
CG B:HIS135 4.2 13.5 1.0
CG C:HIS306 4.3 16.6 1.0
CG B:ASP98 4.4 29.7 1.0
CE1 C:HIS255 4.4 17.7 1.0
CD2 C:HIS255 4.5 16.6 1.0
ND1 C:HIS255 4.8 18.2 1.0
O C:HOH3066 4.9 24.1 1.0
CG C:HIS255 4.9 17.2 1.0
CD2 C:LEU308 5.0 14.0 1.0

Copper binding site 5 out of 6 in 1rzq

Go back to Copper Binding Sites List in 1rzq
Copper binding site 5 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu501

b:26.9
occ:1.00
 ND1 C:HIS95 2.1 14.8 1.0
ND1 C:HIS145 2.2 21.9 1.0
SG C:CYS136 2.2 20.3 1.0
SD C:MET150 2.5 21.3 1.0
CE1 C:HIS95 3.1 14.1 1.0
CE1 C:HIS145 3.1 23.4 1.0
CB C:CYS136 3.1 15.8 1.0
CG C:HIS95 3.2 15.3 1.0
CG C:HIS145 3.2 20.9 1.0
CE C:MET150 3.3 18.1 1.0
CB C:HIS95 3.5 15.4 1.0
CB C:HIS145 3.6 18.4 1.0
CA C:HIS95 3.9 14.0 1.0
CG C:MET150 4.0 19.8 1.0
O C:LEU94 4.2 15.7 1.0
NE2 C:HIS95 4.2 14.7 1.0
NE2 C:HIS145 4.2 22.8 1.0
CG C:PRO138 4.2 22.7 1.0
CD2 C:HIS95 4.3 14.7 1.0
CD2 C:HIS145 4.3 22.0 1.0
CB C:MET150 4.3 18.7 1.0
SD C:MET62 4.3 21.6 1.0
CA C:CYS136 4.6 15.4 1.0
CD C:PRO138 4.7 18.4 1.0
CA C:HIS145 4.7 18.7 1.0
N C:ASN96 4.8 15.7 1.0
CB C:MET62 4.8 18.0 1.0
N C:HIS95 4.9 14.7 1.0
C C:HIS95 4.9 15.0 1.0
C C:LEU94 5.0 17.1 1.0

Copper binding site 6 out of 6 in 1rzq

Go back to Copper Binding Sites List in 1rzq
Copper binding site 6 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu502

b:19.3
occ:1.00
 NE2 C:HIS100 2.0 13.5 1.0
O C:HOH3004 2.0 11.6 1.0
NE2 C:HIS135 2.1 13.2 1.0
NE2 A:HIS306 2.1 14.1 1.0
CE1 C:HIS100 2.9 11.0 1.0
CD2 C:HIS135 3.0 11.3 1.0
CE1 A:HIS306 3.0 11.8 1.0
CD2 C:HIS100 3.1 11.7 1.0
CE1 C:HIS135 3.2 11.0 1.0
CD2 A:HIS306 3.2 11.1 1.0
OD2 C:ASP98 3.3 32.6 1.0
ND1 C:HIS100 4.0 13.4 1.0
CG C:HIS100 4.1 14.1 1.0
ND1 A:HIS306 4.2 13.1 1.0
CG C:HIS135 4.2 12.8 1.0
ND1 C:HIS135 4.2 14.6 1.0
NE2 A:HIS255 4.2 16.6 1.0
CG C:ASP98 4.3 28.0 1.0
CG A:HIS306 4.3 12.5 1.0
CE1 A:HIS255 4.5 16.8 1.0
CD2 A:HIS255 4.6 14.4 1.0
OD1 C:ASP98 4.8 26.7 1.0
ND1 A:HIS255 4.9 15.8 1.0
CD2 A:LEU308 5.0 15.5 1.0
CG A:HIS255 5.0 15.3 1.0

Reference:

H.T.Li, C.Wang, T.Chang, W.C.Chang, M.Y.Liu, J.Le Gall, L.L.Gui, J.P.Zhang, X.M.An, W.R.Chang. pH-Profile Crystal Structure Studies of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes Biochem.Biophys.Res.Commun. V. 316 107 2004.
ISSN: ISSN 0006-291X
PubMed: 15003518
DOI: 10.1016/J.BBRC.2004.01.177
Page generated: Mon Jul 14 00:22:57 2025

Last articles

Na in 5ETM
Na in 5ETN
Na in 5EQV
Na in 5ETK
Na in 5EQ3
Na in 5EOZ
Na in 5EP8
Na in 5EOU
Na in 5EPE
Na in 5ENN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy