Atomistry » Copper » PDB 1oe2-1rjp » 1ov8
Atomistry »
  Copper »
    PDB 1oe2-1rjp »
      1ov8 »

Copper in PDB 1ov8: Auracyanin B Structure in Space Group, P65

Protein crystallography data

The structure of Auracyanin B Structure in Space Group, P65, PDB code: 1ov8 was solved by M.Lee, M.J.Maher, H.C.Freeman, J.M.Guss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.13 / 1.90
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 115.885, 115.885, 108.149, 90.00, 90.00, 120.00
R / Rfree (%) 19.2 / 21.9

Other elements in 1ov8:

The structure of Auracyanin B Structure in Space Group, P65 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Auracyanin B Structure in Space Group, P65 (pdb code 1ov8). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Auracyanin B Structure in Space Group, P65, PDB code: 1ov8:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 1ov8

Go back to Copper Binding Sites List in 1ov8
Copper binding site 1 out of 4 in the Auracyanin B Structure in Space Group, P65


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Auracyanin B Structure in Space Group, P65 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu150

b:24.4
occ:1.00
ND1 A:HIS57 1.8 3.7 1.0
SG A:CYS122 2.1 12.4 1.0
ND1 A:HIS127 2.2 4.2 1.0
CE1 A:HIS57 2.8 11.5 1.0
SD A:MET132 2.9 11.6 1.0
CG A:HIS57 2.9 10.8 1.0
CG A:HIS127 3.2 6.9 1.0
CE1 A:HIS127 3.2 9.1 1.0
CB A:CYS122 3.2 9.7 1.0
CB A:HIS57 3.4 8.5 1.0
CA A:HIS57 3.5 9.7 1.0
CB A:HIS127 3.5 7.9 1.0
O A:GLN56 3.5 11.5 1.0
CE A:MET132 3.6 5.2 1.0
NE2 A:HIS57 3.9 6.6 1.0
CD2 A:HIS57 4.0 8.9 1.0
CB A:PHE124 4.2 6.3 1.0
NE2 A:HIS127 4.3 4.7 1.0
CD2 A:HIS127 4.3 5.5 1.0
CG A:MET132 4.4 8.5 1.0
C A:GLN56 4.4 10.2 1.0
N A:HIS57 4.4 10.2 1.0
N A:ASN58 4.4 10.0 1.0
C A:HIS57 4.5 10.7 1.0
CA A:CYS122 4.6 10.6 1.0
CB A:MET132 4.8 8.2 1.0
N A:PHE124 4.9 7.7 1.0
CA A:HIS127 5.0 6.6 1.0

Copper binding site 2 out of 4 in 1ov8

Go back to Copper Binding Sites List in 1ov8
Copper binding site 2 out of 4 in the Auracyanin B Structure in Space Group, P65


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Auracyanin B Structure in Space Group, P65 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu151

b:24.5
occ:1.00
ND1 B:HIS57 1.8 7.5 1.0
ND1 B:HIS127 2.2 2.5 1.0
SG B:CYS122 2.2 10.6 1.0
CE1 B:HIS57 2.7 12.1 1.0
SD B:MET132 2.9 10.7 1.0
CG B:HIS57 2.9 9.3 1.0
CB B:CYS122 3.1 8.6 1.0
CE1 B:HIS127 3.1 7.1 1.0
CG B:HIS127 3.2 8.5 1.0
CB B:HIS57 3.4 9.0 1.0
CB B:HIS127 3.5 9.2 1.0
CE B:MET132 3.5 8.7 1.0
CA B:HIS57 3.5 9.7 1.0
O B:GLN56 3.6 10.7 1.0
NE2 B:HIS57 3.8 10.7 1.0
CD2 B:HIS57 4.0 8.9 1.0
CB B:PHE124 4.2 6.5 1.0
NE2 B:HIS127 4.2 4.8 1.0
CG B:MET132 4.3 10.3 1.0
CD2 B:HIS127 4.3 6.9 1.0
N B:ASN58 4.4 10.6 1.0
C B:GLN56 4.5 10.9 1.0
N B:HIS57 4.5 8.1 1.0
C B:HIS57 4.6 9.3 1.0
CA B:CYS122 4.6 9.1 1.0
CB B:MET132 4.8 10.2 1.0
N B:PHE124 5.0 8.9 1.0
CA B:HIS127 5.0 8.7 1.0

Copper binding site 3 out of 4 in 1ov8

Go back to Copper Binding Sites List in 1ov8
Copper binding site 3 out of 4 in the Auracyanin B Structure in Space Group, P65


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Auracyanin B Structure in Space Group, P65 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu152

b:25.1
occ:1.00
ND1 C:HIS57 1.9 4.8 1.0
SG C:CYS122 2.0 12.7 1.0
ND1 C:HIS127 2.2 4.1 1.0
CE1 C:HIS57 2.8 7.7 1.0
SD C:MET132 2.9 10.2 1.0
CG C:HIS57 3.0 10.5 1.0
CE1 C:HIS127 3.1 9.3 1.0
CB C:CYS122 3.1 8.4 1.0
CG C:HIS127 3.2 8.8 1.0
CB C:HIS57 3.4 9.4 1.0
CB C:HIS127 3.5 8.2 1.0
O C:GLN56 3.5 10.1 1.0
CA C:HIS57 3.5 9.4 1.0
CE C:MET132 3.5 4.0 1.0
NE2 C:HIS57 4.0 6.1 1.0
CD2 C:HIS57 4.1 8.5 1.0
CB C:PHE124 4.2 7.0 1.0
NE2 C:HIS127 4.3 5.9 1.0
CD2 C:HIS127 4.3 5.0 1.0
CG C:MET132 4.3 8.2 1.0
C C:GLN56 4.4 10.1 1.0
N C:ASN58 4.4 11.0 1.0
N C:HIS57 4.5 8.5 1.0
C C:HIS57 4.5 11.3 1.0
CA C:CYS122 4.6 9.3 1.0
CB C:MET132 4.8 9.1 1.0
N C:PHE124 4.9 8.2 1.0
CA C:HIS127 5.0 7.9 1.0

Copper binding site 4 out of 4 in 1ov8

Go back to Copper Binding Sites List in 1ov8
Copper binding site 4 out of 4 in the Auracyanin B Structure in Space Group, P65


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Auracyanin B Structure in Space Group, P65 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu153

b:24.6
occ:1.00
ND1 D:HIS57 1.8 10.0 1.0
SG D:CYS122 2.2 11.4 1.0
ND1 D:HIS127 2.2 2.1 1.0
CE1 D:HIS57 2.7 13.1 1.0
SD D:MET132 2.9 11.0 1.0
CG D:HIS57 3.0 8.7 1.0
CB D:CYS122 3.1 8.7 1.0
CE1 D:HIS127 3.2 9.1 1.0
CG D:HIS127 3.2 6.9 1.0
CB D:HIS57 3.5 9.2 1.0
CB D:HIS127 3.5 9.4 1.0
CA D:HIS57 3.5 9.1 1.0
CE D:MET132 3.5 3.1 1.0
O D:GLN56 3.6 11.4 1.0
NE2 D:HIS57 3.9 11.8 1.0
CD2 D:HIS57 4.0 8.1 1.0
CB D:PHE124 4.1 5.6 1.0
NE2 D:HIS127 4.3 4.9 1.0
CG D:MET132 4.3 9.0 1.0
CD2 D:HIS127 4.3 9.4 1.0
C D:GLN56 4.4 10.8 1.0
N D:ASN58 4.4 9.5 1.0
N D:HIS57 4.4 8.6 1.0
C D:HIS57 4.5 8.5 1.0
CA D:CYS122 4.6 8.2 1.0
CB D:MET132 4.8 9.1 1.0
N D:PHE124 4.9 7.1 1.0
CA D:HIS127 5.0 8.4 1.0

Reference:

M.Lee, M.J.Maher, H.C.Freeman, J.M.Guss. Auracyanin B Structure in Space Group P6(5). Acta Crystallogr.,Sect.D V. 59 1545 2003.
ISSN: ISSN 0907-4449
PubMed: 12925783
DOI: 10.1107/S0907444903014161
Page generated: Tue Jul 30 22:33:34 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy