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Copper in PDB 1dyu: The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies with Mutational Variants.

Enzymatic activity of The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies with Mutational Variants.

All present enzymatic activity of The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies with Mutational Variants.:
1.4.3.4;

Protein crystallography data

The structure of The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies with Mutational Variants., PDB code: 1dyu was solved by J.M.Murray, C.M.Wilmot, C.G.Saysell, J.Jaeger, P.F.Knowles, S.E.V.Phillips, M.J.Mcpherson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20 / 2.04
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 135.050, 167.170, 79.920, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 23.7

Other elements in 1dyu:

The structure of The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies with Mutational Variants. also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Copper Binding Sites:

The binding sites of Copper atom in the The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies with Mutational Variants. (pdb code 1dyu). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies with Mutational Variants., PDB code: 1dyu:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1dyu

Go back to Copper Binding Sites List in 1dyu
Copper binding site 1 out of 2 in the The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies with Mutational Variants.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies with Mutational Variants. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu801

b:30.8
occ:1.00
 NE2 A:HIS526 2.1 26.7 1.0
ND1 A:HIS689 2.2 23.4 1.0
NE2 A:HIS524 2.3 29.4 1.0
CD2 A:HIS526 2.9 22.7 1.0
O A:HOH2618 2.9 30.1 1.0
CG A:HIS689 3.2 22.5 1.0
CE1 A:HIS524 3.2 26.2 1.0
CD2 A:HIS524 3.2 26.7 1.0
CE1 A:HIS689 3.2 22.3 1.0
CE1 A:HIS526 3.2 26.4 1.0
CB A:HIS689 3.4 22.8 1.0
O A:HOH2737 4.1 50.8 1.0
CG A:HIS526 4.1 24.6 1.0
ND1 A:HIS526 4.2 23.7 1.0
ND1 A:HIS524 4.3 28.6 1.0
CG A:HIS524 4.3 27.3 1.0
CD2 A:HIS689 4.3 24.4 1.0
NE2 A:HIS689 4.3 24.6 1.0
O A:HOH2291 4.7 39.4 1.0
O A:HOH2617 4.7 43.8 1.0
CE A:MET699 4.8 43.3 1.0
O A:HOH2515 4.9 27.9 1.0
CE1 A:HIS613 4.9 27.1 1.0
SD A:MET699 4.9 53.5 1.0
CA A:HIS689 4.9 21.1 1.0

Copper binding site 2 out of 2 in 1dyu

Go back to Copper Binding Sites List in 1dyu
Copper binding site 2 out of 2 in the The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies with Mutational Variants.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies with Mutational Variants. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu801

b:28.8
occ:1.00
 NE2 B:HIS526 2.1 29.5 1.0
ND1 B:HIS689 2.1 22.9 1.0
NE2 B:HIS524 2.4 24.8 1.0
CD2 B:HIS526 2.9 25.5 1.0
O B:HOH2523 2.9 23.9 1.0
CG B:HIS689 3.1 21.9 1.0
CE1 B:HIS689 3.2 21.2 1.0
CD2 B:HIS524 3.2 24.6 1.0
CE1 B:HIS526 3.2 28.7 1.0
CB B:HIS689 3.4 21.1 1.0
CE1 B:HIS524 3.5 23.4 1.0
O B:HOH2712 3.7 37.3 1.0
CG B:HIS526 4.1 21.6 1.0
ND1 B:HIS526 4.2 27.3 1.0
CD2 B:HIS689 4.2 22.0 1.0
NE2 B:HIS689 4.2 25.7 1.0
CG B:HIS524 4.4 22.0 1.0
ND1 B:HIS524 4.5 20.8 1.0
SD B:MET699 4.8 59.3 1.0
O B:HOH2226 4.9 27.4 1.0
CE B:MET699 4.9 45.0 1.0
CA B:HIS689 4.9 20.9 1.0
O2 B:TPQ466 4.9 45.8 1.0
NE2 B:HIS613 4.9 25.3 1.0
O B:HOH2521 5.0 35.0 1.0
O B:HOH2429 5.0 32.8 1.0

Reference:

J.M.Murray, C.M.Wilmot, C.G.Saysell, J.Jaeger, P.F.Knowles, S.E.V.Phillips, M.J.Mcpherson. The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase : X-Ray Crystallographicstudies with Mutational Variants Biochemistry V. 38 8217 1999.
ISSN: ISSN 0006-2960
PubMed: 10387067
DOI: 10.1021/BI9900469
Page generated: Sun Jul 13 23:36:08 2025

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