Atomistry » Copper » PDB 1a2v-1baw » 1aqr
Atomistry »
  Copper »
    PDB 1a2v-1baw »
      1aqr »

Copper in PDB 1aqr: Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure

Copper Binding Sites:

The binding sites of Copper atom in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure (pdb code 1aqr). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 7 binding sites of Copper where determined in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure, PDB code: 1aqr:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7;

Copper binding site 1 out of 7 in 1aqr

Go back to Copper Binding Sites List in 1aqr
Copper binding site 1 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu41

b:0.4
occ:1.00
HB2 A:CYS7 1.8 0.5 1.0
CB A:CYS7 2.3 0.5 1.0
SG A:CYS9 2.3 0.4 1.0
SG A:CYS7 2.4 0.4 1.0
HA A:CYS7 2.4 0.5 1.0
SG A:CYS24 2.5 0.6 1.0
CU A:CU147 2.5 0.4 1.0
HB2 A:CYS24 2.6 0.5 1.0
CA A:CYS7 2.8 0.5 1.0
CU A:CU144 2.8 0.5 1.0
CB A:CYS24 2.9 0.5 1.0
HB3 A:CYS24 3.0 0.5 1.0
HB2 A:CYS9 3.2 0.3 1.0
HB3 A:CYS7 3.2 0.5 1.0
CU A:CU143 3.3 0.3 1.0
H A:CYS9 3.3 0.5 1.0
CB A:CYS9 3.4 0.3 1.0
C A:CYS7 3.7 0.5 1.0
N A:CYS7 4.0 0.6 1.0
HB2 A:CYS26 4.0 0.8 1.0
HB3 A:CYS9 4.0 0.3 1.0
SG A:CYS14 4.1 0.3 1.0
SG A:CYS38 4.1 0.5 1.0
N A:CYS9 4.2 0.5 1.0
O A:CYS7 4.2 0.5 1.0
H A:GLN8 4.4 0.7 1.0
H A:CYS7 4.4 0.7 1.0
N A:GLN8 4.4 0.6 1.0
CA A:CYS24 4.4 0.7 1.0
CA A:CYS9 4.5 0.4 1.0
SG A:CYS26 4.5 1.0 1.0
HE1 A:HIS5 4.5 0.8 1.0
CU A:CU146 4.6 0.5 1.0
HA A:GLN21 4.6 0.5 1.0
O A:CYS20 4.7 0.5 1.0
O A:GLU6 4.7 0.7 1.0
C A:GLU6 4.8 0.7 1.0
CB A:CYS26 4.8 0.8 1.0
H A:CYS24 4.8 0.7 1.0
CU A:CU142 4.8 0.3 1.0
HE22 A:GLN21 4.9 3.0 1.0
HA A:CYS24 4.9 0.7 1.0
HA A:CYS9 4.9 0.5 1.0
HB3 A:CYS14 5.0 0.3 1.0

Copper binding site 2 out of 7 in 1aqr

Go back to Copper Binding Sites List in 1aqr
Copper binding site 2 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu42

b:0.3
occ:1.00
SG A:CYS14 2.2 0.3 1.0
SG A:CYS36 2.3 0.4 1.0
HB3 A:CYS9 2.5 0.3 1.0
SG A:CYS11 2.5 0.4 1.0
CU A:CU145 2.6 0.5 1.0
HB2 A:CYS11 2.7 0.3 1.0
CB A:CYS11 3.1 0.3 1.0
HB2 A:CYS14 3.1 0.3 1.0
CU A:CU146 3.3 0.5 1.0
CB A:CYS14 3.3 0.2 1.0
CU A:CU147 3.3 0.4 1.0
CB A:CYS9 3.3 0.3 1.0
HB2 A:CYS36 3.4 0.5 1.0
HB3 A:CYS11 3.5 0.4 1.0
CB A:CYS36 3.5 0.5 1.0
SG A:CYS9 3.7 0.4 1.0
HB2 A:CYS9 3.7 0.3 1.0
H A:CYS11 3.8 0.4 1.0
HB2 A:CYS38 3.8 0.5 1.0
HB3 A:CYS14 3.9 0.3 1.0
HB3 A:CYS36 3.9 0.6 1.0
SG A:CYS30 3.9 0.3 1.0
H A:CYS14 4.4 0.3 1.0
CA A:CYS11 4.4 0.4 1.0
N A:CYS11 4.5 0.4 1.0
CA A:CYS14 4.5 0.3 1.0
N A:CYS14 4.5 0.3 1.0
CA A:CYS9 4.5 0.4 1.0
HA A:CYS9 4.6 0.5 1.0
CB A:CYS38 4.6 0.6 1.0
HA A:CYS14 4.7 0.3 1.0
CA A:CYS36 4.7 0.6 1.0
HA A:CYS36 4.7 0.6 1.0
H A:SER13 4.8 0.4 1.0
SG A:CYS38 4.8 0.5 1.0
HB3 A:CYS38 4.8 0.7 1.0
CU A:CU141 4.8 0.4 1.0
CU A:CU144 5.0 0.5 1.0

Copper binding site 3 out of 7 in 1aqr

Go back to Copper Binding Sites List in 1aqr
Copper binding site 3 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu43

b:0.3
occ:1.00
SG A:CYS20 2.3 0.5 1.0
SG A:CYS7 2.5 0.4 1.0
HB2 A:CYS24 2.6 0.5 1.0
CU A:CU147 2.6 0.4 1.0
O A:CYS20 2.9 0.5 1.0
HB3 A:CYS24 3.0 0.5 1.0
HB2 A:CYS7 3.1 0.5 1.0
SG A:CYS38 3.2 0.5 1.0
HB2 A:CYS20 3.3 0.6 1.0
CB A:CYS7 3.3 0.5 1.0
CB A:CYS24 3.3 0.5 1.0
C A:CYS20 3.3 0.5 1.0
CU A:CU141 3.3 0.4 1.0
CB A:CYS20 3.3 0.6 1.0
HE21 A:GLN21 3.4 2.4 1.0
HA A:GLN21 3.4 0.5 1.0
HB3 A:CYS7 3.4 0.5 1.0
SG A:CYS14 3.7 0.3 1.0
NE2 A:GLN21 3.7 2.4 1.0
HA A:CYS14 3.8 0.3 1.0
N A:GLN21 3.9 0.5 1.0
CA A:CYS20 3.9 0.5 1.0
HE22 A:GLN21 3.9 3.0 1.0
CU A:CU144 4.0 0.5 1.0
HB2 A:CYS9 4.0 0.3 1.0
HG2 A:GLN21 4.0 1.7 1.0
CA A:GLN21 4.1 0.5 1.0
HA A:CYS24 4.2 0.7 1.0
HB3 A:CYS20 4.2 0.7 1.0
H A:CYS20 4.3 0.5 1.0
CD A:GLN21 4.3 1.9 1.0
CA A:CYS24 4.3 0.7 1.0
H A:GLN21 4.5 0.5 1.0
HB3 A:CYS14 4.5 0.3 1.0
SG A:CYS24 4.5 0.6 1.0
O A:ASN17 4.5 0.4 1.0
CB A:CYS14 4.6 0.2 1.0
N A:CYS20 4.6 0.5 1.0
CG A:GLN21 4.6 1.1 1.0
CA A:CYS14 4.6 0.3 1.0
CA A:CYS7 4.7 0.5 1.0
HA A:CYS20 4.8 0.6 1.0
CB A:CYS9 4.8 0.3 1.0
H A:CYS24 4.8 0.7 1.0
SG A:CYS9 4.8 0.4 1.0
N A:CYS24 4.9 0.7 1.0
CB A:CYS38 4.9 0.6 1.0
H A:GLY39 4.9 1.6 1.0
HA A:GLU18 5.0 0.5 1.0
O A:CYS7 5.0 0.5 1.0

Copper binding site 4 out of 7 in 1aqr

Go back to Copper Binding Sites List in 1aqr
Copper binding site 4 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu44

b:0.5
occ:1.00
HB2 A:CYS24 1.9 0.5 1.0
SG A:CYS26 2.2 1.0 1.0
SG A:CYS38 2.3 0.5 1.0
CB A:CYS24 2.4 0.5 1.0
SG A:CYS24 2.5 0.6 1.0
CU A:CU147 2.5 0.4 1.0
CU A:CU141 2.8 0.4 1.0
HB2 A:CYS26 3.1 0.8 1.0
HA A:CYS38 3.1 0.8 1.0
CA A:CYS24 3.2 0.7 1.0
CB A:CYS26 3.3 0.8 1.0
CU A:CU146 3.3 0.5 1.0
HB2 A:CYS38 3.3 0.5 1.0
CB A:CYS38 3.3 0.6 1.0
C A:CYS24 3.3 0.8 1.0
HA A:CYS24 3.3 0.7 1.0
HB3 A:CYS24 3.4 0.5 1.0
H A:CYS26 3.5 0.8 1.0
N A:SER25 3.6 0.9 1.0
H A:SER25 3.6 0.8 1.0
HB2 A:CYS7 3.6 0.5 1.0
CA A:CYS38 3.7 0.7 1.0
N A:CYS26 3.8 0.8 1.0
O A:CYS24 3.9 0.9 1.0
CU A:CU143 4.0 0.3 1.0
HB3 A:CYS26 4.1 0.9 1.0
HE1 A:HIS5 4.1 0.8 1.0
SG A:CYS9 4.2 0.4 1.0
CA A:CYS26 4.2 0.7 1.0
C A:SER25 4.3 0.9 1.0
HB3 A:CYS38 4.3 0.7 1.0
H A:GLY39 4.4 1.6 1.0
N A:CYS24 4.5 0.7 1.0
N A:CYS38 4.5 0.7 1.0
CB A:CYS7 4.6 0.5 1.0
CA A:SER25 4.6 1.0 1.0
SG A:CYS14 4.7 0.3 1.0
SG A:CYS36 4.7 0.4 1.0
SG A:CYS7 4.7 0.4 1.0
H A:CYS24 4.8 0.7 1.0
HA A:CYS26 4.8 0.8 1.0
H A:CYS38 4.9 0.6 1.0
HA A:CYS7 4.9 0.5 1.0
C A:CYS38 5.0 1.0 1.0
O A:SER25 5.0 1.0 1.0
CU A:CU142 5.0 0.3 1.0

Copper binding site 5 out of 7 in 1aqr

Go back to Copper Binding Sites List in 1aqr
Copper binding site 5 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu45

b:0.5
occ:1.00
SG A:CYS30 2.2 0.3 1.0
SG A:CYS11 2.4 0.4 1.0
CU A:CU142 2.6 0.3 1.0
O A:CYS30 2.9 0.7 1.0
HB3 A:CYS9 3.0 0.3 1.0
HB3 A:CYS30 3.2 0.6 1.0
SG A:CYS9 3.3 0.4 1.0
CU A:CU146 3.3 0.5 1.0
CB A:CYS30 3.3 0.5 1.0
HB2 A:CYS36 3.4 0.5 1.0
SG A:CYS36 3.5 0.4 1.0
CB A:CYS9 3.6 0.3 1.0
HA A:CYS9 3.7 0.5 1.0
C A:CYS30 3.7 0.7 1.0
CB A:CYS36 3.9 0.5 1.0
CA A:CYS30 3.9 0.5 1.0
HA A:CYS30 4.1 0.5 1.0
CB A:CYS11 4.2 0.3 1.0
O A:SER32 4.2 0.6 1.0
H A:CYS11 4.2 0.4 1.0
CA A:CYS9 4.2 0.4 1.0
HB2 A:CYS30 4.2 0.5 1.0
HA A:CYS36 4.3 0.6 1.0
HB2 A:CYS11 4.4 0.3 1.0
SG A:CYS14 4.4 0.3 1.0
H A:GLN10 4.5 0.5 1.0
HB2 A:CYS9 4.5 0.3 1.0
HB3 A:CYS11 4.6 0.4 1.0
CA A:CYS36 4.7 0.6 1.0
N A:ASN31 4.8 0.8 1.0
HB3 A:CYS36 4.8 0.6 1.0
CU A:CU147 4.8 0.4 1.0
HB2 A:CYS14 4.9 0.3 1.0
HA A:ASN31 4.9 1.1 1.0
N A:CYS11 5.0 0.4 1.0
HB3 A:CYS26 5.0 0.9 1.0

Copper binding site 6 out of 7 in 1aqr

Go back to Copper Binding Sites List in 1aqr
Copper binding site 6 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu46

b:0.5
occ:1.00
SG A:CYS36 2.2 0.4 1.0
SG A:CYS26 2.3 1.0 1.0
SG A:CYS30 2.3 0.3 1.0
HA A:CYS36 2.8 0.6 1.0
HB2 A:CYS38 2.9 0.5 1.0
HB3 A:CYS26 2.9 0.9 1.0
HD2 A:PRO37 3.1 0.6 1.0
CB A:CYS26 3.1 0.8 1.0
CU A:CU145 3.3 0.5 1.0
CU A:CU142 3.3 0.3 1.0
CU A:CU144 3.3 0.5 1.0
CB A:CYS36 3.3 0.5 1.0
CA A:CYS36 3.4 0.6 1.0
HB2 A:CYS26 3.5 0.8 1.0
CU A:CU147 3.7 0.4 1.0
HB2 A:CYS36 3.7 0.5 1.0
H A:CYS38 3.8 0.6 1.0
C A:CYS36 3.8 0.6 1.0
CB A:CYS38 3.8 0.6 1.0
CB A:CYS30 3.8 0.5 1.0
CD A:PRO37 3.9 0.7 1.0
HB2 A:CYS30 3.9 0.5 1.0
N A:PRO37 3.9 0.7 1.0
N A:CYS38 4.0 0.7 1.0
SG A:CYS9 4.1 0.4 1.0
HB3 A:CYS30 4.2 0.6 1.0
SG A:CYS38 4.2 0.5 1.0
HA A:CYS38 4.2 0.8 1.0
HB3 A:CYS36 4.3 0.6 1.0
CA A:CYS38 4.3 0.7 1.0
O A:CYS36 4.4 0.6 1.0
CA A:CYS26 4.5 0.7 1.0
HD3 A:PRO37 4.5 0.7 1.0
C A:PRO37 4.5 0.8 1.0
HA A:CYS26 4.6 0.8 1.0
CU A:CU141 4.6 0.4 1.0
SG A:CYS14 4.6 0.3 1.0
HB3 A:CYS38 4.6 0.7 1.0
N A:CYS36 4.8 0.6 1.0
HB3 A:CYS9 4.8 0.3 1.0
HA A:CYS30 4.9 0.5 1.0
HD2 A:PRO27 4.9 0.7 1.0
HG2 A:PRO37 4.9 0.9 1.0
CA A:PRO37 4.9 0.8 1.0
CA A:CYS30 4.9 0.5 1.0

Copper binding site 7 out of 7 in 1aqr

Go back to Copper Binding Sites List in 1aqr
Copper binding site 7 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu47

b:0.4
occ:1.00
SG A:CYS14 2.2 0.3 1.0
SG A:CYS38 2.3 0.5 1.0
CU A:CU144 2.5 0.5 1.0
CU A:CU141 2.5 0.4 1.0
CU A:CU143 2.6 0.3 1.0
HB2 A:CYS24 2.7 0.5 1.0
HB2 A:CYS38 3.1 0.5 1.0
SG A:CYS9 3.3 0.4 1.0
CU A:CU142 3.3 0.3 1.0
SG A:CYS7 3.3 0.4 1.0
CB A:CYS38 3.3 0.6 1.0
HB2 A:CYS9 3.3 0.3 1.0
CB A:CYS9 3.6 0.3 1.0
CB A:CYS24 3.6 0.5 1.0
HB3 A:CYS9 3.6 0.3 1.0
CU A:CU146 3.7 0.5 1.0
HB2 A:CYS7 3.7 0.5 1.0
HB3 A:CYS38 3.8 0.7 1.0
CB A:CYS14 3.9 0.2 1.0
SG A:CYS36 4.0 0.4 1.0
HB3 A:CYS24 4.0 0.5 1.0
SG A:CYS24 4.0 0.6 1.0
SG A:CYS26 4.1 1.0 1.0
HA A:CYS14 4.1 0.3 1.0
HB3 A:CYS14 4.1 0.3 1.0
CB A:CYS7 4.2 0.5 1.0
SG A:CYS20 4.3 0.5 1.0
HA A:CYS38 4.5 0.8 1.0
CA A:CYS38 4.6 0.7 1.0
HB2 A:CYS14 4.6 0.3 1.0
CA A:CYS14 4.6 0.3 1.0
HA A:CYS24 4.7 0.7 1.0
H A:GLY39 4.7 1.6 1.0
CA A:CYS24 4.8 0.7 1.0
CU A:CU145 4.8 0.5 1.0
H A:CYS9 4.9 0.5 1.0
HB3 A:CYS7 4.9 0.5 1.0
HA A:CYS7 4.9 0.5 1.0
HB2 A:CYS26 5.0 0.8 1.0
HB2 A:CYS20 5.0 0.6 1.0

Reference:

C.W.Peterson, S.S.Narula, I.M.Armitage. 3D Solution Structure of Copper and Silver-Substituted Yeast Metallothioneins. Febs Lett. V. 379 85 1996.
ISSN: ISSN 0014-5793
PubMed: 8566237
DOI: 10.1016/0014-5793(95)01492-6
Page generated: Tue Jul 30 21:29:36 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy