Copper in PDB 9vqm: Cryo-Em Structure of ELAPOR1WT in Tetrameric Form

The binding sites of Copper atom in the Cryo-Em Structure of ELAPOR1WT in Tetrameric Form (pdb code 9vqm). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Cryo-Em Structure of ELAPOR1WT in Tetrameric Form, PDB code: 9vqm:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in the Cryo-Em Structure of ELAPOR1WT in Tetrameric Form


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cryo-Em Structure of ELAPOR1WT in Tetrameric Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1104 b:30.0 occ:1.00 NE2 A:HIS55 2.1 43.4 1.0 NE2 D:HIS55 2.2 41.4 1.0 ND1 D:HIS74 2.2 46.5 1.0 ND1 A:HIS74 2.2 60.6 1.0 CB A:HIS74 2.3 60.6 1.0 CG A:HIS74 2.6 60.6 1.0 CD2 A:HIS55 2.9 43.4 1.0 CE1 D:HIS55 3.0 41.4 1.0 CB D:HIS74 3.0 46.5 1.0 CG D:HIS74 3.0 46.5 1.0 CD2 D:HIS55 3.2 41.4 1.0 CE1 A:HIS55 3.3 43.4 1.0 CE1 D:HIS74 3.4 46.5 1.0 CE1 A:HIS74 3.5 60.6 1.0 CA A:HIS74 3.8 60.6 1.0 CD2 A:HIS74 3.9 60.6 1.0 CG A:HIS55 4.1 43.4 1.0 ND1 D:HIS55 4.2 41.4 1.0 CD2 D:HIS74 4.2 46.5 1.0 ND1 A:HIS55 4.3 43.4 1.0 CG D:HIS55 4.3 41.4 1.0 NE2 A:HIS74 4.3 60.6 1.0 NE2 D:HIS74 4.4 46.5 1.0 CA D:HIS74 4.4 46.5 1.0 O A:SER52 4.6 48.6 1.0 N A:HIS74 4.6 60.6 1.0 C A:HIS74 4.9 60.6 1.0 O D:GLU53 4.9 40.5 1.0 O D:SER52 4.9 52.0 1.0

Copper binding site 2 out of 3 in the Cryo-Em Structure of ELAPOR1WT in Tetrameric Form


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cryo-Em Structure of ELAPOR1WT in Tetrameric Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1105 b:30.0 occ:1.00 ND1 A:HIS309 2.4 80.4 1.0 CE1 A:HIS309 2.8 80.4 1.0 NE2 C:HIS47 3.0 66.0 1.0 CE1 C:HIS47 3.5 66.0 1.0 CG A:HIS309 3.7 80.4 1.0 CD2 C:HIS47 4.0 66.0 1.0 NE2 A:HIS309 4.1 80.4 1.0 CB A:HIS309 4.4 80.4 1.0 CA A:HIS309 4.5 80.4 1.0 CD2 A:HIS309 4.5 80.4 1.0 ND1 C:HIS47 4.6 66.0 1.0 CB C:GLU45 4.7 76.3 1.0 OE1 C:GLU45 4.7 76.3 1.0 CD A:PRO310 4.8 87.8 1.0 CG C:HIS47 4.8 66.0 1.0

Copper binding site 3 out of 3 in the Cryo-Em Structure of ELAPOR1WT in Tetrameric Form


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cryo-Em Structure of ELAPOR1WT in Tetrameric Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu1104 b:178.0 occ:1.00 ND1 D:HIS309 2.7 72.8 1.0 NE2 B:HIS47 3.5 76.0 1.0 CE1 D:HIS309 3.5 72.8 1.0 CG D:HIS309 3.7 72.8 1.0 CB D:HIS309 4.0 72.8 1.0 CA D:HIS309 4.0 72.8 1.0 CD2 B:HIS47 4.1 76.0 1.0 CE1 B:HIS47 4.2 76.0 1.0 N D:HIS309 4.6 72.8 1.0 CD D:PRO310 4.6 80.8 1.0 NE2 D:HIS309 4.7 72.8 1.0 CD2 D:HIS309 4.8 72.8 1.0 O D:CYS308 5.0 73.0 1.0 C D:CYS308 5.0 73.0 1.0

T.Shao, J.Ma. ELAPOR1 Is A Copper-Dependent Tethering Factor Driving Proacrosomal Vesicle Fusion in Acrosome Biogenesis To Be Published.