Copper in PDB 9kzl: Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site

The structure of Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site, PDB code: 9kzl was solved by G.H.Zhao, H.C.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.60 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	168.573, 117.675, 97.588, 90, 96.64, 90
R / Rfree (%)	16.7 / 20.9

The binding sites of Copper atom in the Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site (pdb code 9kzl). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site, PDB code: 9kzl:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in the Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu503 b:24.8 occ:1.00 O A:OH505 1.9 28.0 1.0 NE2 A:HIS50 2.0 23.4 1.0 NE2 A:HIS78 2.1 16.0 1.0 NE2 A:HIS69 2.2 23.4 1.0 HO A:OH505 2.2 33.6 1.0 CD2 A:HIS50 2.9 21.4 1.0 CE1 A:HIS50 3.0 21.8 1.0 CE1 A:HIS78 3.0 18.5 1.0 CD2 A:HIS78 3.1 19.7 1.0 CE1 A:HIS69 3.2 30.9 1.0 CD2 A:HIS69 3.2 22.1 1.0 CU A:CU504 3.7 37.4 1.0 SG A:CYS67 3.8 25.3 1.0 CB A:CYS67 3.9 19.5 1.0 ND1 A:HIS50 4.1 22.1 1.0 CG A:HIS50 4.1 19.8 1.0 ND1 A:HIS78 4.2 18.3 1.0 CG A:HIS78 4.2 20.2 1.0 CD1 A:LEU197 4.3 23.6 1.0 ND1 A:HIS69 4.3 23.7 1.0 CG A:HIS69 4.3 26.0 1.0 CZ A:PHE206 4.4 26.4 1.0 CE2 A:PHE206 4.5 25.0 1.0 CE1 A:PHE74 4.7 17.1 1.0 NE2 A:HIS210 4.7 20.9 1.0 NE2 A:HIS179 5.0 22.6 1.0

Copper binding site 2 out of 6 in the Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu504 b:37.4 occ:1.00 O A:OH505 2.0 28.0 1.0 NE2 A:HIS210 2.0 20.9 1.0 NE2 A:HIS179 2.1 22.6 1.0 HO A:OH505 2.2 33.6 1.0 NE2 A:HIS183 2.2 20.2 1.0 CE1 A:HIS210 2.4 19.3 1.0 CD2 A:HIS179 2.9 15.1 1.0 CE1 A:HIS183 3.1 21.9 1.0 CE1 A:HIS179 3.2 20.4 1.0 CD2 A:HIS183 3.2 20.8 1.0 CD2 A:HIS210 3.4 19.9 1.0 ND1 A:HIS210 3.7 27.4 1.0 CU A:CU503 3.7 24.8 1.0 CD2 A:HIS78 4.0 19.7 1.0 CG A:HIS179 4.1 18.5 1.0 NE2 A:HIS78 4.1 16.0 1.0 CE2 A:PHE206 4.2 25.0 1.0 ND1 A:HIS183 4.2 23.6 1.0 ND1 A:HIS179 4.2 18.8 1.0 CG A:HIS210 4.2 21.7 1.0 CG A:HIS183 4.3 18.9 1.0 CZ A:PHE206 4.4 26.4 1.0 CE1 A:PHE74 4.5 17.1 1.0 CD1 A:LEU340 4.6 22.0 1.0 CZ A:PHE74 4.7 18.2 1.0 CD2 A:HIS209 4.7 19.8 1.0 CG A:HIS78 4.9 20.2 1.0 NE2 A:HIS50 4.9 23.4 1.0 CD2 A:PHE206 5.0 23.7 1.0

Copper binding site 3 out of 6 in the Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu503 b:23.2 occ:1.00 NE2 B:HIS50 1.9 16.2 1.0 O B:O506 2.0 22.6 1.0 NE2 B:HIS78 2.1 15.6 1.0 NE2 B:HIS69 2.2 16.3 1.0 CE1 B:HIS69 2.9 24.3 1.0 CD2 B:HIS50 2.9 18.1 1.0 CE1 B:HIS50 2.9 19.5 1.0 O B:O505 3.1 16.4 1.0 CE1 B:HIS78 3.1 17.9 1.0 CD2 B:HIS78 3.1 19.7 1.0 CD2 B:HIS69 3.3 21.0 1.0 SG B:CYS67 3.9 21.2 1.0 CU B:CU504 3.9 32.8 1.0 CB B:CYS67 3.9 16.8 1.0 ND1 B:HIS50 4.0 18.6 1.0 CG B:HIS50 4.1 17.9 1.0 ND1 B:HIS69 4.1 19.5 1.0 CD2 B:LEU197 4.2 23.5 1.0 ND1 B:HIS78 4.2 16.5 1.0 CG B:HIS78 4.2 18.4 1.0 CZ B:PHE206 4.3 22.3 1.0 CG B:HIS69 4.3 22.6 1.0 CE2 B:PHE206 4.5 20.6 1.0 CE1 B:PHE74 4.7 16.7 1.0 NE2 B:HIS210 4.8 24.4 1.0 NE2 B:HIS179 5.0 18.4 1.0

Copper binding site 4 out of 6 in the Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu504 b:32.8 occ:1.00 O B:O505 1.3 16.4 1.0 NE2 B:HIS210 2.0 24.4 1.0 NE2 B:HIS179 2.1 18.4 1.0 NE2 B:HIS183 2.2 18.9 1.0 CE1 B:HIS210 2.3 17.9 1.0 O B:O506 2.3 22.6 1.0 CD2 B:HIS179 2.9 11.8 1.0 CD2 B:HIS183 3.1 16.1 1.0 CE1 B:HIS183 3.2 17.3 1.0 CE1 B:HIS179 3.3 17.8 1.0 CD2 B:HIS210 3.4 22.2 1.0 ND1 B:HIS210 3.6 24.0 1.0 CU B:CU503 3.9 23.2 1.0 CD2 B:HIS78 4.0 19.7 1.0 CG B:HIS179 4.1 18.4 1.0 CG B:HIS210 4.1 20.3 1.0 CE2 B:PHE206 4.1 20.6 1.0 NE2 B:HIS78 4.3 15.6 1.0 CG B:HIS183 4.3 17.4 1.0 ND1 B:HIS183 4.3 18.2 1.0 ND1 B:HIS179 4.3 16.6 1.0 CZ B:PHE206 4.4 22.3 1.0 CD2 B:HIS209 4.4 17.8 1.0 CE1 B:PHE74 4.7 16.7 1.0 CD1 B:LEU340 4.7 19.5 1.0 CD2 B:PHE206 4.8 17.3 1.0 NE2 B:HIS209 4.8 16.2 1.0 CZ B:PHE74 4.8 16.4 1.0 CG B:HIS78 4.9 18.4 1.0

Copper binding site 5 out of 6 in the Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu503 b:29.0 occ:1.00 NE2 C:HIS78 2.0 19.8 1.0 NE2 C:HIS50 2.1 22.2 1.0 O C:OH505 2.1 31.4 1.0 NE2 C:HIS69 2.2 27.8 1.0 HO C:OH505 2.2 37.7 1.0 CE1 C:HIS69 2.7 30.8 1.0 CE1 C:HIS78 3.0 23.8 1.0 CD2 C:HIS50 3.0 23.6 1.0 CD2 C:HIS78 3.1 22.7 1.0 CE1 C:HIS50 3.1 23.8 1.0 CD2 C:HIS69 3.4 26.5 1.0 CU C:CU504 3.7 37.2 1.0 SG C:CYS67 3.8 27.8 1.0 CB C:CYS67 3.9 23.0 1.0 ND1 C:HIS69 4.0 31.4 1.0 ND1 C:HIS78 4.1 22.2 1.0 CG C:HIS50 4.2 22.0 1.0 CG C:HIS78 4.2 22.1 1.0 ND1 C:HIS50 4.2 23.4 1.0 CG C:HIS69 4.3 28.9 1.0 CZ C:PHE206 4.4 25.8 1.0 CE2 C:PHE206 4.5 22.6 1.0 CE1 C:PHE74 4.6 24.2 1.0 NE2 C:HIS210 4.7 22.3 1.0

Copper binding site 6 out of 6 in the Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met Site within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu504 b:37.2 occ:1.00 NE2 C:HIS210 2.0 22.3 1.0 O C:OH505 2.0 31.4 1.0 NE2 C:HIS183 2.3 20.3 1.0 NE2 C:HIS179 2.3 20.2 1.0 HO C:OH505 2.4 37.7 1.0 CE1 C:HIS210 2.6 24.7 1.0 CD2 C:HIS179 2.8 21.5 1.0 CE1 C:HIS183 3.2 20.0 1.0 CD2 C:HIS183 3.2 24.2 1.0 CD2 C:HIS210 3.3 23.4 1.0 CE1 C:HIS179 3.6 21.3 1.0 CU C:CU503 3.7 29.0 1.0 ND1 C:HIS210 3.9 26.6 1.0 CD2 C:HIS78 4.0 22.7 1.0 CG C:HIS179 4.1 24.3 1.0 NE2 C:HIS78 4.1 19.8 1.0 CG C:HIS210 4.2 24.6 1.0 ND1 C:HIS183 4.2 21.9 1.0 CG C:HIS183 4.3 20.4 1.0 CE2 C:PHE206 4.4 22.6 1.0 CE1 C:PHE74 4.4 24.2 1.0 ND1 C:HIS179 4.4 22.2 1.0 CD1 C:LEU340 4.5 21.3 1.0 CZ C:PHE74 4.6 21.5 1.0 CZ C:PHE206 4.7 25.8 1.0 NE2 C:HIS69 4.8 27.8 1.0 CD2 C:HIS209 4.8 25.6 1.0 CG C:HIS78 4.9 22.1 1.0 CE1 C:HIS78 5.0 23.8 1.0

G.H.Zhao, H.C.Yang. Crystal Structure of the Functional Unit (HTH1-H) of Hemocyanin From Haliotis Discus Hannai,Containing A Met State To Be Published.