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Copper in PDB 9fom: Crystal Structure of As-Isolated F295L Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii

Enzymatic activity of Crystal Structure of As-Isolated F295L Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii

All present enzymatic activity of Crystal Structure of As-Isolated F295L Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii:
1.7.2.1;

Protein crystallography data

The structure of Crystal Structure of As-Isolated F295L Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii, PDB code: 9fom was solved by N.Petchyam, S.V.Antonyuk, S.S.Hasnain, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.09 / 1.16
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 128.257, 128.257, 86.194, 90, 90, 120
R / Rfree (%) 11.4 / 13.9

Other elements in 9fom:

The structure of Crystal Structure of As-Isolated F295L Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii also contains other interesting chemical elements:

Iron (Fe) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of As-Isolated F295L Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii (pdb code 9fom). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of As-Isolated F295L Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii, PDB code: 9fom:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 9fom

Go back to Copper Binding Sites List in 9fom
Copper binding site 1 out of 2 in the Crystal Structure of As-Isolated F295L Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of As-Isolated F295L Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:12.2
occ:1.00
ND1 A:HIS94 2.0 12.5 1.0
ND1 A:HIS143 2.1 11.3 1.0
SG A:CYS135 2.2 12.2 1.0
SD A:MET148 2.6 12.8 1.0
HB3 A:HIS143 2.9 11.3 1.0
CE1 A:HIS94 2.9 11.5 1.0
CE1 A:HIS143 3.0 12.5 1.0
CG A:HIS94 3.1 11.6 1.0
HE1 A:HIS94 3.1 11.8 1.0
HE1 A:HIS143 3.1 12.2 1.0
CG A:HIS143 3.1 11.0 1.0
HA A:HIS94 3.1 11.6 1.0
HB3 A:HIS94 3.1 11.8 1.0
HB2 A:CYS135 3.2 11.5 1.0
CB A:CYS135 3.2 11.6 1.0
HE1 A:MET148 3.3 13.6 1.0
HB3 A:CYS135 3.3 11.5 1.0
CE A:MET148 3.4 13.7 1.0
CB A:HIS94 3.5 12.2 1.0
HB A:THR137 3.5 12.4 1.0
CB A:HIS143 3.5 11.8 1.0
HE2 A:MET148 3.6 13.5 1.0
CA A:HIS94 3.8 11.2 1.0
H A:ASN95 3.9 11.6 1.0
HE3 A:TRP61 3.9 11.7 1.0
O A:PRO93 4.0 12.8 1.0
NE2 A:HIS143 4.1 11.8 1.0
CG A:MET148 4.1 12.4 1.0
HB2 A:HIS143 4.1 11.5 1.0
NE2 A:HIS94 4.1 11.9 1.0
CD2 A:HIS94 4.2 11.7 1.0
CD2 A:HIS143 4.2 12.0 1.0
OG1 A:THR137 4.3 13.0 1.0
HE3 A:MET148 4.3 13.5 1.0
CB A:THR137 4.3 12.2 1.0
HG3 A:MET148 4.4 12.1 1.0
HB2 A:HIS94 4.4 11.7 1.0
HB3 A:MET148 4.4 11.1 1.0
HA A:HIS143 4.5 10.8 1.0
HB2 A:MET148 4.5 11.0 1.0
H A:THR137 4.5 11.8 1.0
CE3 A:TRP61 4.6 11.3 1.0
CA A:HIS143 4.6 10.7 1.0
CA A:CYS135 4.6 10.3 1.0
N A:ASN95 4.6 11.5 1.0
CB A:MET148 4.6 10.9 1.0
HB3 A:TRP61 4.8 11.4 1.0
N A:HIS94 4.8 12.3 1.0
C A:PRO93 4.8 11.8 1.0
HZ3 A:TRP61 4.8 12.3 1.0
C A:HIS94 4.8 11.7 1.0
HG2 A:MET148 4.8 12.2 1.0
HA A:CYS135 4.8 10.5 1.0
HG12 A:VAL45 4.8 13.1 1.0
HG22 A:THR137 4.9 12.5 1.0

Copper binding site 2 out of 2 in 9fom

Go back to Copper Binding Sites List in 9fom
Copper binding site 2 out of 2 in the Crystal Structure of As-Isolated F295L Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of As-Isolated F295L Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:11.7
occ:1.00
NE2 A:HIS134 2.0 10.8 1.0
NE2 A:HIS99 2.0 11.2 1.0
O A:HOH635 2.0 13.1 1.0
CD2 A:HIS134 2.9 9.8 1.0
CE1 A:HIS99 3.0 11.8 1.0
CD2 A:HIS99 3.0 10.5 1.0
CE1 A:HIS134 3.1 11.1 1.0
HD2 A:HIS134 3.1 9.7 1.0
HE1 A:HIS99 3.1 11.6 1.0
HD2 A:HIS99 3.2 10.5 1.0
HE1 A:HIS134 3.3 11.0 1.0
OD1 A:ASP97 3.7 13.5 1.0
CG A:HIS134 4.1 9.5 1.0
ND1 A:HIS99 4.1 10.9 1.0
ND1 A:HIS134 4.2 10.7 1.0
CG A:HIS99 4.2 10.4 1.0
CG A:ASP97 4.4 11.8 1.0
HB3 A:ASP97 4.7 11.1 1.0
OD2 A:ASP97 4.8 13.1 1.0
HG11 A:VAL132 4.9 10.6 1.0
HA3 A:GLY269 4.9 10.7 1.0

Reference:

N.Petchyam, S.V.Antonyuk, S.S.Hasnain. Crystal Structure of As-Isolated F295LMUTANT of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii To Be Published.
Page generated: Mon Jul 14 09:54:34 2025

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