Copper in PDB 8ytr: The Structure of Cu(II)-Copc From Thioalkalivibrio Paradoxus

The structure of The Structure of Cu(II)-Copc From Thioalkalivibrio Paradoxus, PDB code: 8ytr was solved by O.G.Kulikova, A.Y.Solovieva, L.A.Varfolomeeva, N.I.Dergousova, A.Y.Nikolaeva, K.M.Boyko, T.V.Tikhonova, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.39 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	28.241, 38.275, 104.666, 90, 90.33, 90
R / Rfree (%)	18.6 / 23

The binding sites of Copper atom in the The Structure of Cu(II)-Copc From Thioalkalivibrio Paradoxus (pdb code 8ytr). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the The Structure of Cu(II)-Copc From Thioalkalivibrio Paradoxus, PDB code: 8ytr:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the The Structure of Cu(II)-Copc From Thioalkalivibrio Paradoxus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of The Structure of Cu(II)-Copc From Thioalkalivibrio Paradoxus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu204 b:33.2 occ:0.80 ND1 A:HIS142 2.0 38.3 1.0 ND1 A:HIS31 2.0 48.7 1.0 OD2 A:ASP140 2.0 36.4 1.0 N A:HIS31 2.0 38.8 1.0 O A:HOH327 2.2 23.8 0.5 CG A:ASP140 2.8 40.3 1.0 CA A:HIS31 2.9 34.3 1.0 OD1 A:ASP140 2.9 38.1 1.0 CE1 A:HIS31 2.9 47.8 1.0 CG A:HIS142 3.0 37.4 1.0 CG A:HIS31 3.0 44.5 1.0 CE1 A:HIS142 3.0 44.2 1.0 CB A:HIS142 3.3 32.6 1.0 CB A:HIS31 3.4 36.2 1.0 O A:HOH301 3.8 27.6 0.5 NE2 A:HIS31 4.0 43.5 1.0 CD2 A:HIS31 4.1 42.4 1.0 CD2 A:HIS142 4.1 40.1 1.0 NE2 A:HIS142 4.1 41.0 1.0 CB A:ASP140 4.3 41.4 1.0 C A:HIS31 4.3 35.7 1.0 OE1 A:GLU58 4.4 40.4 1.0 CA A:HIS142 4.6 31.8 1.0 N A:HIS142 4.7 30.5 1.0 O A:HIS31 4.9 32.6 1.0

Copper binding site 2 out of 2 in the The Structure of Cu(II)-Copc From Thioalkalivibrio Paradoxus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of The Structure of Cu(II)-Copc From Thioalkalivibrio Paradoxus within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu201 b:36.8 occ:0.80 ND1 B:HIS142 2.0 36.0 1.0 ND1 B:HIS31 2.0 42.6 1.0 N B:HIS31 2.0 44.0 1.0 OD2 B:ASP140 2.1 35.0 1.0 CA B:HIS31 2.9 40.4 1.0 CG B:ASP140 2.9 38.5 1.0 CE1 B:HIS31 2.9 46.0 1.0 CG B:HIS142 3.0 37.1 1.0 CE1 B:HIS142 3.0 37.6 1.0 CG B:HIS31 3.0 43.9 1.0 OD1 B:ASP140 3.0 40.2 1.0 CB B:HIS142 3.2 33.9 1.0 CB B:HIS31 3.4 44.1 1.0 NE2 B:HIS31 4.0 44.2 1.0 NE2 B:HIS142 4.0 40.0 1.0 CD2 B:HIS31 4.1 45.8 1.0 CD2 B:HIS142 4.1 37.1 1.0 C B:HIS31 4.3 38.9 1.0 CB B:ASP140 4.4 40.1 1.0 OE1 B:GLU58 4.5 35.3 1.0 CA B:HIS142 4.6 34.0 1.0 N B:HIS142 4.7 35.5 1.0 O B:HIS31 4.9 40.4 1.0

O.G.Kulikova, A.Y.Solovieva, L.A.Varfolomeeva, N.I.Dergousova, A.Y.Nikolaeva, K.M.Boyko, T.V.Tikhonova, V.O.Popov. The Structure of Cu(II)-Copc From Thioalkalivibrio Paradoxus To Be Published.