Atomistry » Copper » PDB 8s5y-8you » 8ucl
Atomistry »
  Copper »
    PDB 8s5y-8you »
      8ucl »

Copper in PDB 8ucl: Komagataella Pastoris Cytochrome C Oxidase in Complex with Human VMAT2 and Tetrabenazine

Other elements in 8ucl:

The structure of Komagataella Pastoris Cytochrome C Oxidase in Complex with Human VMAT2 and Tetrabenazine also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Zinc (Zn) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Komagataella Pastoris Cytochrome C Oxidase in Complex with Human VMAT2 and Tetrabenazine (pdb code 8ucl). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Komagataella Pastoris Cytochrome C Oxidase in Complex with Human VMAT2 and Tetrabenazine, PDB code: 8ucl:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 8ucl

Go back to Copper Binding Sites List in 8ucl
Copper binding site 1 out of 3 in the Komagataella Pastoris Cytochrome C Oxidase in Complex with Human VMAT2 and Tetrabenazine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Komagataella Pastoris Cytochrome C Oxidase in Complex with Human VMAT2 and Tetrabenazine within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cu601

b:56.1
occ:1.00
ND1 a:HIS243 2.1 50.3 1.0
CE1 a:HIS293 2.3 48.9 1.0
CE1 a:HIS243 2.4 50.3 1.0
NE2 a:HIS292 2.5 49.2 1.0
CHA a:HEA603 2.8 53.5 1.0
NE2 a:HIS293 3.0 48.9 1.0
C1A a:HEA603 3.2 53.5 1.0
ND1 a:HIS293 3.4 48.9 1.0
CD2 a:HIS292 3.4 49.2 1.0
NA a:HEA603 3.4 53.5 1.0
CG a:HIS243 3.4 50.3 1.0
FE a:HEA603 3.4 53.5 1.0
CE1 a:HIS292 3.6 49.2 1.0
C4D a:HEA603 3.7 53.5 1.0
NE2 a:HIS243 3.7 50.3 1.0
ND a:HEA603 4.0 53.5 1.0
C2A a:HEA603 4.1 53.5 1.0
CD2 a:HIS293 4.2 48.9 1.0
CD2 a:HIS243 4.2 50.3 1.0
CB a:HIS243 4.2 50.3 1.0
CG a:HIS293 4.4 48.9 1.0
C4A a:HEA603 4.4 53.5 1.0
NB a:HEA603 4.5 53.5 1.0
CG a:HIS292 4.6 49.2 1.0
ND1 a:HIS292 4.6 49.2 1.0
CA a:HIS243 4.7 50.3 1.0
C3A a:HEA603 4.7 53.5 1.0
CAA a:HEA603 4.9 53.5 1.0
C3D a:HEA603 4.9 53.5 1.0
NC a:HEA603 4.9 53.5 1.0

Copper binding site 2 out of 3 in 8ucl

Go back to Copper Binding Sites List in 8ucl
Copper binding site 2 out of 3 in the Komagataella Pastoris Cytochrome C Oxidase in Complex with Human VMAT2 and Tetrabenazine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Komagataella Pastoris Cytochrome C Oxidase in Complex with Human VMAT2 and Tetrabenazine within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Cu301

b:74.4
occ:1.00
CU1 b:CUA301 0.0 74.4 1.0
CU2 b:CUA301 1.7 74.4 1.0
SG b:CYS223 2.0 55.3 1.0
SG b:CYS219 2.4 54.8 1.0
CD2 b:HIS184 3.1 51.9 1.0
SD b:MET230 3.4 52.7 1.0
O b:GLU221 3.4 55.0 1.0
ND1 b:HIS227 3.6 52.2 1.0
CB b:CYS219 3.6 54.8 1.0
CE b:MET230 3.6 52.7 1.0
CB b:CYS223 3.7 55.3 1.0
CG b:HIS184 3.9 51.9 1.0
NE2 b:HIS184 4.0 51.9 1.0
CE1 b:HIS227 4.1 52.2 1.0
CB b:HIS184 4.2 51.9 1.0
CA b:HIS184 4.5 51.9 1.0
N b:CYS223 4.6 55.3 1.0
C b:GLU221 4.7 55.0 1.0
CG b:HIS227 4.7 52.2 1.0
CG b:MET230 4.8 52.7 1.0
CA b:CYS223 4.8 55.3 1.0
ND1 b:HIS184 4.9 51.9 1.0
O b:HIS227 4.9 52.2 1.0
CA b:CYS219 5.0 54.8 1.0
CE1 b:HIS184 5.0 51.9 1.0

Copper binding site 3 out of 3 in 8ucl

Go back to Copper Binding Sites List in 8ucl
Copper binding site 3 out of 3 in the Komagataella Pastoris Cytochrome C Oxidase in Complex with Human VMAT2 and Tetrabenazine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Komagataella Pastoris Cytochrome C Oxidase in Complex with Human VMAT2 and Tetrabenazine within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Cu301

b:74.4
occ:1.00
CU2 b:CUA301 0.0 74.4 1.0
CU1 b:CUA301 1.7 74.4 1.0
SD b:MET230 2.0 52.7 1.0
CE b:MET230 2.2 52.7 1.0
CD2 b:HIS184 2.3 51.9 1.0
SG b:CYS223 3.0 55.3 1.0
NE2 b:HIS184 3.0 51.9 1.0
CG b:HIS184 3.5 51.9 1.0
O b:GLN121 3.6 54.1 1.0
SG b:CYS219 3.7 54.8 1.0
CG b:MET230 3.7 52.7 1.0
CB b:CYS223 4.1 55.3 1.0
CE1 b:HIS184 4.2 51.9 1.0
CB b:HIS184 4.3 51.9 1.0
CB b:MET230 4.3 52.7 1.0
CB b:CYS219 4.3 54.8 1.0
ND1 b:HIS184 4.5 51.9 1.0
O b:LEU120 4.6 52.8 1.0
C b:GLN121 4.8 54.1 1.0
ND1 b:HIS227 4.9 52.2 1.0
CD1 b:TRP122 4.9 53.4 1.0

Reference:

J.Ye, B.Liu, W.Li. Komagataella Pastoris Cytochrome C Oxidase in Complex with Human VMAT2 and Tetrabenazine To Be Published.
Page generated: Thu Oct 31 19:41:05 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy