Copper in PDB 8uck: Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2

The structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 also contains other interesting chemical elements:

Zinc	(Zn)	1 atom
Iron	(Fe)	2 atoms

The binding sites of Copper atom in the Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 (pdb code 8uck). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2, PDB code: 8uck:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in the Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Cu601 b:59.2 occ:1.00 ND1 a:HIS243 2.1 50.4 1.0 CE1 a:HIS293 2.3 48.9 1.0 NE2 a:HIS293 2.3 48.9 1.0 CE1 a:HIS243 2.6 50.4 1.0 CHA a:HEA603 2.7 54.1 1.0 NE2 a:HIS292 2.8 49.8 1.0 C1A a:HEA603 3.0 54.1 1.0 CE1 a:HIS292 3.3 49.8 1.0 CG a:HIS243 3.3 50.4 1.0 ND1 a:HIS293 3.5 48.9 1.0 NA a:HEA603 3.5 54.1 1.0 CD2 a:HIS293 3.5 48.9 1.0 C4D a:HEA603 3.6 54.1 1.0 CD2 a:HIS292 3.8 49.8 1.0 NE2 a:HIS243 3.8 50.4 1.0 C2A a:HEA603 3.8 54.1 1.0 FE a:HEA603 3.9 54.1 1.0 CB a:HIS243 4.1 50.4 1.0 ND a:HEA603 4.1 54.1 1.0 CG a:HIS293 4.1 48.9 1.0 CD2 a:HIS243 4.2 50.4 1.0 C4A a:HEA603 4.4 54.1 1.0 ND1 a:HIS292 4.4 49.8 1.0 CAA a:HEA603 4.4 54.1 1.0 CA a:HIS243 4.5 50.4 1.0 C3A a:HEA603 4.5 54.1 1.0 CG a:HIS292 4.7 49.8 1.0 C3D a:HEA603 4.7 54.1 1.0 CG2 a:VAL246 4.9 49.0 1.0

Copper binding site 2 out of 3 in the Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 within 5.0Å range: probe atom residue distance (Å) B Occ b:Cu301 b:77.2 occ:1.00 CU1 b:CUA301 0.0 77.2 1.0 CU2 b:CUA301 1.7 77.2 1.0 SG b:CYS219 2.2 58.2 1.0 SG b:CYS223 2.3 59.6 1.0 CB b:CYS219 3.2 58.2 1.0 ND1 b:HIS227 3.2 54.9 1.0 SD b:MET230 3.3 56.4 1.0 O b:GLU221 3.3 58.5 1.0 CE1 b:HIS227 3.8 54.9 1.0 CD2 b:HIS184 3.9 56.0 1.0 CB b:CYS223 3.9 59.6 1.0 CG b:MET230 4.3 56.4 1.0 CG b:HIS227 4.4 54.9 1.0 O b:HIS227 4.4 54.9 1.0 C b:GLU221 4.5 58.5 1.0 CG b:HIS184 4.6 56.0 1.0 CA b:CYS219 4.6 58.2 1.0 CE b:MET230 4.6 56.4 1.0 CB b:HIS184 4.7 56.0 1.0 CA b:HIS184 4.7 56.0 1.0 CA b:HIS227 4.8 54.9 1.0 N b:CYS223 4.8 59.6 1.0 N b:SER220 4.8 57.0 1.0 NE2 b:HIS184 4.8 56.0 1.0 C b:CYS219 4.9 58.2 1.0 CB b:HIS227 4.9 54.9 1.0

Copper binding site 3 out of 3 in the Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 within 5.0Å range: probe atom residue distance (Å) B Occ b:Cu301 b:77.2 occ:1.00 CU2 b:CUA301 0.0 77.2 1.0 CU1 b:CUA301 1.7 77.2 1.0 SD b:MET230 2.1 56.4 1.0 SG b:CYS223 2.8 59.6 1.0 CD2 b:HIS184 3.0 56.0 1.0 CE b:MET230 3.1 56.4 1.0 CG b:MET230 3.7 56.4 1.0 SG b:CYS219 3.7 58.2 1.0 NE2 b:HIS184 3.7 56.0 1.0 CB b:CYS223 3.9 59.6 1.0 CG b:HIS184 4.0 56.0 1.0 O b:GLN121 4.0 59.4 1.0 CB b:CYS219 4.1 58.2 1.0 ND1 b:HIS227 4.5 54.9 1.0 CB b:MET230 4.5 56.4 1.0 CB b:HIS184 4.6 56.0 1.0 O b:GLU221 4.8 58.5 1.0 CE1 b:HIS184 4.8 56.0 1.0 O b:HIS227 4.9 54.9 1.0

J.Ye, B.Liu, W.Li. Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 To Be Published.