Copper in PDB 8ucj: Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (11 Subunits) in Complex with Human VMAT2

The structure of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (11 Subunits) in Complex with Human VMAT2 also contains other interesting chemical elements:

Iron	(Fe)	2 atoms
Zinc	(Zn)	1 atom

The binding sites of Copper atom in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (11 Subunits) in Complex with Human VMAT2 (pdb code 8ucj). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (11 Subunits) in Complex with Human VMAT2, PDB code: 8ucj:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (11 Subunits) in Complex with Human VMAT2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (11 Subunits) in Complex with Human VMAT2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Cu601 b:60.6 occ:1.00 NE2 a:HIS293 2.1 52.3 1.0 NE2 a:HIS292 2.1 53.5 1.0 ND1 a:HIS243 2.1 54.5 1.0 CE1 a:HIS293 2.3 52.3 1.0 CE1 a:HIS243 2.4 54.5 1.0 CE1 a:HIS292 2.8 53.5 1.0 CD2 a:HIS292 3.2 53.5 1.0 CD2 a:HIS293 3.3 52.3 1.0 CG a:HIS243 3.4 54.5 1.0 ND1 a:HIS293 3.5 52.3 1.0 NE2 a:HIS243 3.7 54.5 1.0 FE a:HEA603 3.7 56.6 1.0 NA a:HEA603 3.8 56.6 1.0 ND1 a:HIS292 3.9 53.5 1.0 CG a:HIS293 3.9 52.3 1.0 C4A a:HEA603 4.1 56.6 1.0 CG a:HIS292 4.2 53.5 1.0 CD2 a:HIS243 4.2 54.5 1.0 ND a:HEA603 4.2 56.6 1.0 CB a:HIS243 4.3 54.5 1.0 C1A a:HEA603 4.3 56.6 1.0 CHB a:HEA603 4.4 56.6 1.0 C4D a:HEA603 4.6 56.6 1.0 CHA a:HEA603 4.7 56.6 1.0 C1D a:HEA603 4.8 56.6 1.0 NB a:HEA603 4.8 56.6 1.0 C3A a:HEA603 4.8 56.6 1.0 C2A a:HEA603 4.9 56.6 1.0 CA a:HIS243 4.9 54.5 1.0 C1B a:HEA603 5.0 56.6 1.0

Copper binding site 2 out of 3 in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (11 Subunits) in Complex with Human VMAT2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (11 Subunits) in Complex with Human VMAT2 within 5.0Å range: probe atom residue distance (Å) B Occ b:Cu301 b:86.6 occ:1.00 CU1 b:CUA301 0.0 86.6 1.0 CU2 b:CUA301 1.7 86.6 1.0 SG b:CYS219 2.3 60.9 1.0 SG b:CYS223 2.3 62.0 1.0 CB b:CYS219 3.4 60.9 1.0 CD2 b:HIS184 3.5 56.0 1.0 O b:GLU221 3.6 60.2 1.0 ND1 b:HIS227 3.7 60.0 1.0 CE b:MET230 3.8 58.2 1.0 CB b:CYS223 3.8 62.0 1.0 SD b:MET230 4.1 58.2 1.0 CE1 b:HIS227 4.1 60.0 1.0 CG b:HIS184 4.1 56.0 1.0 CB b:HIS184 4.4 56.0 1.0 NE2 b:HIS184 4.4 56.0 1.0 CA b:HIS184 4.6 56.0 1.0 C b:GLU221 4.8 60.2 1.0 CA b:CYS219 4.8 60.9 1.0 CG b:HIS227 4.9 60.0 1.0 N b:CYS223 4.9 62.0 1.0

Copper binding site 3 out of 3 in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (11 Subunits) in Complex with Human VMAT2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (11 Subunits) in Complex with Human VMAT2 within 5.0Å range: probe atom residue distance (Å) B Occ b:Cu301 b:86.6 occ:1.00 CU2 b:CUA301 0.0 86.6 1.0 CU1 b:CUA301 1.7 86.6 1.0 CE b:MET230 2.5 58.2 1.0 SD b:MET230 2.6 58.2 1.0 CD2 b:HIS184 2.7 56.0 1.0 SG b:CYS223 3.1 62.0 1.0 NE2 b:HIS184 3.4 56.0 1.0 SG b:CYS219 3.7 60.9 1.0 O b:GLN121 3.8 60.5 1.0 CG b:HIS184 3.8 56.0 1.0 CB b:CYS223 4.0 62.0 1.0 CG b:MET230 4.1 58.2 1.0 CB b:CYS219 4.3 60.9 1.0 CB b:MET230 4.5 58.2 1.0 CB b:HIS184 4.5 56.0 1.0 CE1 b:HIS184 4.6 56.0 1.0 ND1 b:HIS184 4.8 56.0 1.0 O b:LEU120 4.8 58.1 1.0 C b:GLN121 4.9 60.5 1.0

J.Ye, B.Liu, W.Li. Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (11 Subunits) in Complex with Human VMAT2 To Be Published.