Atomistry » Copper » PDB 8go3-9pcy » 8sr4
Atomistry »
  Copper »
    PDB 8go3-9pcy »
      8sr4 »

Copper in PDB 8sr4: Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded

Enzymatic activity of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded

All present enzymatic activity of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded:
1.14.18.3;

Copper Binding Sites:

The binding sites of Copper atom in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded (pdb code 8sr4). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 9 binding sites of Copper where determined in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded, PDB code: 8sr4:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Copper binding site 1 out of 9 in 8sr4

Go back to Copper Binding Sites List in 8sr4
Copper binding site 1 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:136.3
occ:1.00
 N A:HIS33 2.0 136.7 1.0
ND1 A:HIS137 2.0 111.4 1.0
ND1 A:HIS33 2.0 136.7 1.0
NE2 A:HIS139 2.1 110.1 1.0
CE1 A:HIS137 2.7 111.4 1.0
CE1 A:HIS33 2.9 136.7 1.0
CE1 A:HIS139 3.1 110.1 1.0
CD2 A:HIS139 3.1 110.1 1.0
CG A:HIS33 3.2 136.7 1.0
CG A:HIS137 3.2 111.4 1.0
CA A:HIS33 3.2 136.7 1.0
CB A:HIS33 3.6 136.7 1.0
CB A:HIS137 3.7 111.4 1.0
NE2 A:HIS137 3.9 111.4 1.0
OE1 A:GLU35 3.9 131.5 1.0
NE2 A:HIS33 4.1 136.7 1.0
CD2 A:HIS137 4.1 111.4 1.0
CD2 A:HIS33 4.2 136.7 1.0
ND1 A:HIS139 4.2 110.1 1.0
CG A:HIS139 4.3 110.1 1.0
OE2 A:GLU35 4.3 131.5 1.0
C A:HIS33 4.4 136.7 1.0
O A:HIS137 4.4 111.4 1.0
N A:GLY34 4.5 135.2 1.0
CD A:GLU35 4.5 131.5 1.0
CA A:HIS137 5.0 111.4 1.0

Copper binding site 2 out of 9 in 8sr4

Go back to Copper Binding Sites List in 8sr4
Copper binding site 2 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:135.8
occ:1.00
 NE2 A:GLN404 1.7 110.1 1.0
ND1 A:HIS48 1.9 110.1 1.0
ND1 A:HIS72 2.0 110.1 1.0
CE1 A:HIS72 2.7 110.1 1.0
CE1 A:HIS48 2.8 110.1 1.0
CD A:GLN404 2.9 110.1 1.0
CG A:HIS48 3.1 110.1 1.0
CG A:HIS72 3.2 110.1 1.0
O A:HIS72 3.6 110.1 1.0
CB A:HIS48 3.6 110.1 1.0
OE1 A:GLN404 3.7 110.1 1.0
CD2 A:LEU390 3.8 110.1 1.0
CB A:HIS72 3.8 110.1 1.0
CG A:GLN404 3.8 110.1 1.0
NE2 A:HIS72 3.9 110.1 1.0
CA A:PHE74 3.9 110.1 1.0
NE2 A:HIS48 4.0 110.1 1.0
CD1 A:PHE74 4.1 110.1 1.0
CD2 A:HIS72 4.1 110.1 1.0
N A:PHE74 4.2 110.1 1.0
CB A:PHE74 4.2 110.1 1.0
C A:HIS72 4.2 110.1 1.0
CD2 A:HIS48 4.2 110.1 1.0
C A:VAL73 4.6 110.1 1.0
CG A:PHE74 4.6 110.1 1.0
CA A:HIS72 4.6 110.1 1.0
O A:VAL73 4.8 110.1 1.0
N A:HIS48 4.8 110.1 1.0
CA A:HIS48 4.9 110.1 1.0
CG A:LEU390 4.9 110.1 1.0

Copper binding site 3 out of 9 in 8sr4

Go back to Copper Binding Sites List in 8sr4
Copper binding site 3 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu301

b:184.9
occ:1.00
 NE2 C:HIS231 2.1 150.0 1.0
OD1 C:ASN227 2.1 150.7 1.0
NE2 C:HIS245 2.2 144.7 1.0
CD2 C:HIS245 2.7 144.7 1.0
CD2 C:HIS231 3.0 150.0 1.0
CE1 C:HIS231 3.0 150.0 1.0
CG C:ASN227 3.3 150.7 1.0
CE1 C:HIS245 3.4 144.7 1.0
NH2 C:ARG165 3.7 151.9 1.0
CB C:ASN227 4.0 150.7 1.0
CG C:HIS245 4.0 144.7 1.0
ND1 C:HIS231 4.1 150.0 1.0
CG C:HIS231 4.1 150.0 1.0
CZ C:ARG165 4.2 151.9 1.0
ND1 C:HIS245 4.3 144.7 1.0
NH1 C:ARG165 4.3 151.9 1.0
ND2 C:ASN227 4.3 150.7 1.0
OE2 C:GLU238 4.7 140.3 1.0
CD1 C:LEU244 4.9 147.4 1.0

Copper binding site 4 out of 9 in 8sr4

Go back to Copper Binding Sites List in 8sr4
Copper binding site 4 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu501

b:136.3
occ:1.00
 N E:HIS33 2.0 136.7 1.0
ND1 E:HIS137 2.0 111.4 1.0
ND1 E:HIS33 2.0 136.7 1.0
NE2 E:HIS139 2.1 110.1 1.0
CE1 E:HIS137 2.7 111.4 1.0
CE1 E:HIS33 2.9 136.7 1.0
CE1 E:HIS139 3.1 110.1 1.0
CD2 E:HIS139 3.1 110.1 1.0
CG E:HIS33 3.1 136.7 1.0
CG E:HIS137 3.2 111.4 1.0
CA E:HIS33 3.2 136.7 1.0
CB E:HIS33 3.6 136.7 1.0
CB E:HIS137 3.7 111.4 1.0
NE2 E:HIS137 3.9 111.4 1.0
OE1 E:GLU35 3.9 131.5 1.0
NE2 E:HIS33 4.1 136.7 1.0
CD2 E:HIS137 4.1 111.4 1.0
CD2 E:HIS33 4.2 136.7 1.0
ND1 E:HIS139 4.2 110.1 1.0
CG E:HIS139 4.3 110.1 1.0
OE2 E:GLU35 4.3 131.5 1.0
C E:HIS33 4.4 136.7 1.0
O E:HIS137 4.4 111.4 1.0
N E:GLY34 4.5 135.2 1.0
CD E:GLU35 4.5 131.5 1.0
CA E:HIS137 5.0 111.4 1.0

Copper binding site 5 out of 9 in 8sr4

Go back to Copper Binding Sites List in 8sr4
Copper binding site 5 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu502

b:135.8
occ:1.00
 NE2 E:GLN404 1.7 110.1 1.0
ND1 E:HIS48 1.9 110.1 1.0
ND1 E:HIS72 2.0 110.1 1.0
CE1 E:HIS72 2.7 110.1 1.0
CE1 E:HIS48 2.8 110.1 1.0
CD E:GLN404 2.9 110.1 1.0
CG E:HIS48 3.1 110.1 1.0
CG E:HIS72 3.2 110.1 1.0
O E:HIS72 3.6 110.1 1.0
CB E:HIS48 3.6 110.1 1.0
OE1 E:GLN404 3.7 110.1 1.0
CD2 E:LEU390 3.8 110.1 1.0
CB E:HIS72 3.8 110.1 1.0
CG E:GLN404 3.8 110.1 1.0
NE2 E:HIS72 3.9 110.1 1.0
CA E:PHE74 3.9 110.1 1.0
NE2 E:HIS48 4.0 110.1 1.0
CD1 E:PHE74 4.1 110.1 1.0
CD2 E:HIS72 4.1 110.1 1.0
N E:PHE74 4.2 110.1 1.0
CB E:PHE74 4.2 110.1 1.0
C E:HIS72 4.2 110.1 1.0
CD2 E:HIS48 4.2 110.1 1.0
C E:VAL73 4.6 110.1 1.0
CG E:PHE74 4.6 110.1 1.0
CA E:HIS72 4.6 110.1 1.0
O E:VAL73 4.8 110.1 1.0
N E:HIS48 4.8 110.1 1.0
CA E:HIS48 4.9 110.1 1.0
CG E:LEU390 4.9 110.1 1.0

Copper binding site 6 out of 9 in 8sr4

Go back to Copper Binding Sites List in 8sr4
Copper binding site 6 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cu501

b:136.3
occ:1.00
 N I:HIS33 2.0 136.7 1.0
ND1 I:HIS137 2.0 111.4 1.0
ND1 I:HIS33 2.0 136.7 1.0
NE2 I:HIS139 2.1 110.1 1.0
CE1 I:HIS137 2.7 111.4 1.0
CE1 I:HIS33 2.9 136.7 1.0
CE1 I:HIS139 3.1 110.1 1.0
CD2 I:HIS139 3.1 110.1 1.0
CG I:HIS33 3.2 136.7 1.0
CG I:HIS137 3.2 111.4 1.0
CA I:HIS33 3.2 136.7 1.0
CB I:HIS33 3.6 136.7 1.0
CB I:HIS137 3.7 111.4 1.0
NE2 I:HIS137 3.9 111.4 1.0
OE1 I:GLU35 3.9 131.5 1.0
NE2 I:HIS33 4.1 136.7 1.0
CD2 I:HIS137 4.1 111.4 1.0
CD2 I:HIS33 4.2 136.7 1.0
ND1 I:HIS139 4.2 110.1 1.0
CG I:HIS139 4.3 110.1 1.0
OE2 I:GLU35 4.3 131.5 1.0
C I:HIS33 4.4 136.7 1.0
O I:HIS137 4.4 111.4 1.0
N I:GLY34 4.5 135.2 1.0
CD I:GLU35 4.5 131.5 1.0
CA I:HIS137 5.0 111.4 1.0

Copper binding site 7 out of 9 in 8sr4

Go back to Copper Binding Sites List in 8sr4
Copper binding site 7 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cu502

b:135.8
occ:1.00
 NE2 I:GLN404 1.7 110.1 1.0
ND1 I:HIS48 1.9 110.1 1.0
ND1 I:HIS72 2.0 110.1 1.0
CE1 I:HIS72 2.7 110.1 1.0
CE1 I:HIS48 2.8 110.1 1.0
CD I:GLN404 2.9 110.1 1.0
CG I:HIS48 3.1 110.1 1.0
CG I:HIS72 3.2 110.1 1.0
O I:HIS72 3.6 110.1 1.0
CB I:HIS48 3.6 110.1 1.0
OE1 I:GLN404 3.7 110.1 1.0
CD2 I:LEU390 3.8 110.1 1.0
CB I:HIS72 3.8 110.1 1.0
CG I:GLN404 3.8 110.1 1.0
NE2 I:HIS72 3.9 110.1 1.0
CA I:PHE74 3.9 110.1 1.0
NE2 I:HIS48 4.0 110.1 1.0
CD1 I:PHE74 4.1 110.1 1.0
CD2 I:HIS72 4.1 110.1 1.0
N I:PHE74 4.2 110.1 1.0
CB I:PHE74 4.2 110.1 1.0
C I:HIS72 4.2 110.1 1.0
CD2 I:HIS48 4.2 110.1 1.0
C I:VAL73 4.6 110.1 1.0
CG I:PHE74 4.6 110.1 1.0
CA I:HIS72 4.6 110.1 1.0
O I:VAL73 4.8 110.1 1.0
N I:HIS48 4.8 110.1 1.0
CA I:HIS48 4.9 110.1 1.0
CG I:LEU390 4.9 110.1 1.0

Copper binding site 8 out of 9 in 8sr4

Go back to Copper Binding Sites List in 8sr4
Copper binding site 8 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cu301

b:184.9
occ:1.00
 NE2 G:HIS231 2.1 150.0 1.0
OD1 G:ASN227 2.1 150.7 1.0
NE2 G:HIS245 2.2 144.7 1.0
CD2 G:HIS245 2.7 144.7 1.0
CD2 G:HIS231 3.0 150.0 1.0
CE1 G:HIS231 3.0 150.0 1.0
CG G:ASN227 3.3 150.7 1.0
CE1 G:HIS245 3.4 144.7 1.0
NH2 G:ARG165 3.7 151.9 1.0
CB G:ASN227 4.0 150.7 1.0
CG G:HIS245 4.0 144.7 1.0
ND1 G:HIS231 4.1 150.0 1.0
CG G:HIS231 4.1 150.0 1.0
CZ G:ARG165 4.2 151.9 1.0
ND1 G:HIS245 4.3 144.7 1.0
NH1 G:ARG165 4.3 151.9 1.0
ND2 G:ASN227 4.3 150.7 1.0
OE2 G:GLU238 4.7 140.3 1.0
CD1 G:LEU244 4.9 147.4 1.0

Copper binding site 9 out of 9 in 8sr4

Go back to Copper Binding Sites List in 8sr4
Copper binding site 9 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cu301

b:184.9
occ:1.00
 NE2 K:HIS231 2.1 150.0 1.0
OD1 K:ASN227 2.1 150.7 1.0
NE2 K:HIS245 2.2 144.7 1.0
CD2 K:HIS245 2.7 144.7 1.0
CD2 K:HIS231 3.0 150.0 1.0
CE1 K:HIS231 3.0 150.0 1.0
CG K:ASN227 3.3 150.7 1.0
CE1 K:HIS245 3.4 144.7 1.0
NH2 K:ARG165 3.7 151.9 1.0
CB K:ASN227 4.0 150.7 1.0
CG K:HIS245 4.0 144.7 1.0
ND1 K:HIS231 4.1 150.0 1.0
CG K:HIS231 4.1 150.0 1.0
CZ K:ARG165 4.2 151.9 1.0
ND1 K:HIS245 4.3 144.7 1.0
NH1 K:ARG165 4.3 151.9 1.0
ND2 K:ASN227 4.3 150.7 1.0
OE2 K:GLU238 4.7 140.3 1.0
CD1 K:LEU244 4.9 147.4 1.0

Reference:

F.J.Tucci, R.J.Jodts, B.M.Hoffman, A.C.Rosenzweig. Product Analogue Binding Identifies the Copper Active Site of Particulate Methane Monooyxgenase Nat Catal 2023.
ISSN: ESSN 2520-1158
Page generated: Thu Dec 28 03:52:19 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy