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Copper in PDB 8sr4: Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded

Enzymatic activity of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded

All present enzymatic activity of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded:
1.14.18.3;

Copper Binding Sites:

The binding sites of Copper atom in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded (pdb code 8sr4). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 9 binding sites of Copper where determined in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded, PDB code: 8sr4:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Copper binding site 1 out of 9 in 8sr4

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Copper binding site 1 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:136.3
occ:1.00
 N A:HIS33 2.0 136.7 1.0
ND1 A:HIS137 2.0 111.4 1.0
ND1 A:HIS33 2.0 136.7 1.0
NE2 A:HIS139 2.1 110.1 1.0
CE1 A:HIS137 2.7 111.4 1.0
CE1 A:HIS33 2.9 136.7 1.0
CE1 A:HIS139 3.1 110.1 1.0
CD2 A:HIS139 3.1 110.1 1.0
CG A:HIS33 3.2 136.7 1.0
CG A:HIS137 3.2 111.4 1.0
CA A:HIS33 3.2 136.7 1.0
CB A:HIS33 3.6 136.7 1.0
CB A:HIS137 3.7 111.4 1.0
NE2 A:HIS137 3.9 111.4 1.0
OE1 A:GLU35 3.9 131.5 1.0
NE2 A:HIS33 4.1 136.7 1.0
CD2 A:HIS137 4.1 111.4 1.0
CD2 A:HIS33 4.2 136.7 1.0
ND1 A:HIS139 4.2 110.1 1.0
CG A:HIS139 4.3 110.1 1.0
OE2 A:GLU35 4.3 131.5 1.0
C A:HIS33 4.4 136.7 1.0
O A:HIS137 4.4 111.4 1.0
N A:GLY34 4.5 135.2 1.0
CD A:GLU35 4.5 131.5 1.0
CA A:HIS137 5.0 111.4 1.0

Copper binding site 2 out of 9 in 8sr4

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Copper binding site 2 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:135.8
occ:1.00
 NE2 A:GLN404 1.7 110.1 1.0
ND1 A:HIS48 1.9 110.1 1.0
ND1 A:HIS72 2.0 110.1 1.0
CE1 A:HIS72 2.7 110.1 1.0
CE1 A:HIS48 2.8 110.1 1.0
CD A:GLN404 2.9 110.1 1.0
CG A:HIS48 3.1 110.1 1.0
CG A:HIS72 3.2 110.1 1.0
O A:HIS72 3.6 110.1 1.0
CB A:HIS48 3.6 110.1 1.0
OE1 A:GLN404 3.7 110.1 1.0
CD2 A:LEU390 3.8 110.1 1.0
CB A:HIS72 3.8 110.1 1.0
CG A:GLN404 3.8 110.1 1.0
NE2 A:HIS72 3.9 110.1 1.0
CA A:PHE74 3.9 110.1 1.0
NE2 A:HIS48 4.0 110.1 1.0
CD1 A:PHE74 4.1 110.1 1.0
CD2 A:HIS72 4.1 110.1 1.0
N A:PHE74 4.2 110.1 1.0
CB A:PHE74 4.2 110.1 1.0
C A:HIS72 4.2 110.1 1.0
CD2 A:HIS48 4.2 110.1 1.0
C A:VAL73 4.6 110.1 1.0
CG A:PHE74 4.6 110.1 1.0
CA A:HIS72 4.6 110.1 1.0
O A:VAL73 4.8 110.1 1.0
N A:HIS48 4.8 110.1 1.0
CA A:HIS48 4.9 110.1 1.0
CG A:LEU390 4.9 110.1 1.0

Copper binding site 3 out of 9 in 8sr4

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Copper binding site 3 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu301

b:184.9
occ:1.00
 NE2 C:HIS231 2.1 150.0 1.0
OD1 C:ASN227 2.1 150.7 1.0
NE2 C:HIS245 2.2 144.7 1.0
CD2 C:HIS245 2.7 144.7 1.0
CD2 C:HIS231 3.0 150.0 1.0
CE1 C:HIS231 3.0 150.0 1.0
CG C:ASN227 3.3 150.7 1.0
CE1 C:HIS245 3.4 144.7 1.0
NH2 C:ARG165 3.7 151.9 1.0
CB C:ASN227 4.0 150.7 1.0
CG C:HIS245 4.0 144.7 1.0
ND1 C:HIS231 4.1 150.0 1.0
CG C:HIS231 4.1 150.0 1.0
CZ C:ARG165 4.2 151.9 1.0
ND1 C:HIS245 4.3 144.7 1.0
NH1 C:ARG165 4.3 151.9 1.0
ND2 C:ASN227 4.3 150.7 1.0
OE2 C:GLU238 4.7 140.3 1.0
CD1 C:LEU244 4.9 147.4 1.0

Copper binding site 4 out of 9 in 8sr4

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Copper binding site 4 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu501

b:136.3
occ:1.00
 N E:HIS33 2.0 136.7 1.0
ND1 E:HIS137 2.0 111.4 1.0
ND1 E:HIS33 2.0 136.7 1.0
NE2 E:HIS139 2.1 110.1 1.0
CE1 E:HIS137 2.7 111.4 1.0
CE1 E:HIS33 2.9 136.7 1.0
CE1 E:HIS139 3.1 110.1 1.0
CD2 E:HIS139 3.1 110.1 1.0
CG E:HIS33 3.1 136.7 1.0
CG E:HIS137 3.2 111.4 1.0
CA E:HIS33 3.2 136.7 1.0
CB E:HIS33 3.6 136.7 1.0
CB E:HIS137 3.7 111.4 1.0
NE2 E:HIS137 3.9 111.4 1.0
OE1 E:GLU35 3.9 131.5 1.0
NE2 E:HIS33 4.1 136.7 1.0
CD2 E:HIS137 4.1 111.4 1.0
CD2 E:HIS33 4.2 136.7 1.0
ND1 E:HIS139 4.2 110.1 1.0
CG E:HIS139 4.3 110.1 1.0
OE2 E:GLU35 4.3 131.5 1.0
C E:HIS33 4.4 136.7 1.0
O E:HIS137 4.4 111.4 1.0
N E:GLY34 4.5 135.2 1.0
CD E:GLU35 4.5 131.5 1.0
CA E:HIS137 5.0 111.4 1.0

Copper binding site 5 out of 9 in 8sr4

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Copper binding site 5 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu502

b:135.8
occ:1.00
 NE2 E:GLN404 1.7 110.1 1.0
ND1 E:HIS48 1.9 110.1 1.0
ND1 E:HIS72 2.0 110.1 1.0
CE1 E:HIS72 2.7 110.1 1.0
CE1 E:HIS48 2.8 110.1 1.0
CD E:GLN404 2.9 110.1 1.0
CG E:HIS48 3.1 110.1 1.0
CG E:HIS72 3.2 110.1 1.0
O E:HIS72 3.6 110.1 1.0
CB E:HIS48 3.6 110.1 1.0
OE1 E:GLN404 3.7 110.1 1.0
CD2 E:LEU390 3.8 110.1 1.0
CB E:HIS72 3.8 110.1 1.0
CG E:GLN404 3.8 110.1 1.0
NE2 E:HIS72 3.9 110.1 1.0
CA E:PHE74 3.9 110.1 1.0
NE2 E:HIS48 4.0 110.1 1.0
CD1 E:PHE74 4.1 110.1 1.0
CD2 E:HIS72 4.1 110.1 1.0
N E:PHE74 4.2 110.1 1.0
CB E:PHE74 4.2 110.1 1.0
C E:HIS72 4.2 110.1 1.0
CD2 E:HIS48 4.2 110.1 1.0
C E:VAL73 4.6 110.1 1.0
CG E:PHE74 4.6 110.1 1.0
CA E:HIS72 4.6 110.1 1.0
O E:VAL73 4.8 110.1 1.0
N E:HIS48 4.8 110.1 1.0
CA E:HIS48 4.9 110.1 1.0
CG E:LEU390 4.9 110.1 1.0

Copper binding site 6 out of 9 in 8sr4

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Copper binding site 6 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cu501

b:136.3
occ:1.00
 N I:HIS33 2.0 136.7 1.0
ND1 I:HIS137 2.0 111.4 1.0
ND1 I:HIS33 2.0 136.7 1.0
NE2 I:HIS139 2.1 110.1 1.0
CE1 I:HIS137 2.7 111.4 1.0
CE1 I:HIS33 2.9 136.7 1.0
CE1 I:HIS139 3.1 110.1 1.0
CD2 I:HIS139 3.1 110.1 1.0
CG I:HIS33 3.2 136.7 1.0
CG I:HIS137 3.2 111.4 1.0
CA I:HIS33 3.2 136.7 1.0
CB I:HIS33 3.6 136.7 1.0
CB I:HIS137 3.7 111.4 1.0
NE2 I:HIS137 3.9 111.4 1.0
OE1 I:GLU35 3.9 131.5 1.0
NE2 I:HIS33 4.1 136.7 1.0
CD2 I:HIS137 4.1 111.4 1.0
CD2 I:HIS33 4.2 136.7 1.0
ND1 I:HIS139 4.2 110.1 1.0
CG I:HIS139 4.3 110.1 1.0
OE2 I:GLU35 4.3 131.5 1.0
C I:HIS33 4.4 136.7 1.0
O I:HIS137 4.4 111.4 1.0
N I:GLY34 4.5 135.2 1.0
CD I:GLU35 4.5 131.5 1.0
CA I:HIS137 5.0 111.4 1.0

Copper binding site 7 out of 9 in 8sr4

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Copper binding site 7 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cu502

b:135.8
occ:1.00
 NE2 I:GLN404 1.7 110.1 1.0
ND1 I:HIS48 1.9 110.1 1.0
ND1 I:HIS72 2.0 110.1 1.0
CE1 I:HIS72 2.7 110.1 1.0
CE1 I:HIS48 2.8 110.1 1.0
CD I:GLN404 2.9 110.1 1.0
CG I:HIS48 3.1 110.1 1.0
CG I:HIS72 3.2 110.1 1.0
O I:HIS72 3.6 110.1 1.0
CB I:HIS48 3.6 110.1 1.0
OE1 I:GLN404 3.7 110.1 1.0
CD2 I:LEU390 3.8 110.1 1.0
CB I:HIS72 3.8 110.1 1.0
CG I:GLN404 3.8 110.1 1.0
NE2 I:HIS72 3.9 110.1 1.0
CA I:PHE74 3.9 110.1 1.0
NE2 I:HIS48 4.0 110.1 1.0
CD1 I:PHE74 4.1 110.1 1.0
CD2 I:HIS72 4.1 110.1 1.0
N I:PHE74 4.2 110.1 1.0
CB I:PHE74 4.2 110.1 1.0
C I:HIS72 4.2 110.1 1.0
CD2 I:HIS48 4.2 110.1 1.0
C I:VAL73 4.6 110.1 1.0
CG I:PHE74 4.6 110.1 1.0
CA I:HIS72 4.6 110.1 1.0
O I:VAL73 4.8 110.1 1.0
N I:HIS48 4.8 110.1 1.0
CA I:HIS48 4.9 110.1 1.0
CG I:LEU390 4.9 110.1 1.0

Copper binding site 8 out of 9 in 8sr4

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Copper binding site 8 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cu301

b:184.9
occ:1.00
 NE2 G:HIS231 2.1 150.0 1.0
OD1 G:ASN227 2.1 150.7 1.0
NE2 G:HIS245 2.2 144.7 1.0
CD2 G:HIS245 2.7 144.7 1.0
CD2 G:HIS231 3.0 150.0 1.0
CE1 G:HIS231 3.0 150.0 1.0
CG G:ASN227 3.3 150.7 1.0
CE1 G:HIS245 3.4 144.7 1.0
NH2 G:ARG165 3.7 151.9 1.0
CB G:ASN227 4.0 150.7 1.0
CG G:HIS245 4.0 144.7 1.0
ND1 G:HIS231 4.1 150.0 1.0
CG G:HIS231 4.1 150.0 1.0
CZ G:ARG165 4.2 151.9 1.0
ND1 G:HIS245 4.3 144.7 1.0
NH1 G:ARG165 4.3 151.9 1.0
ND2 G:ASN227 4.3 150.7 1.0
OE2 G:GLU238 4.7 140.3 1.0
CD1 G:LEU244 4.9 147.4 1.0

Copper binding site 9 out of 9 in 8sr4

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Copper binding site 9 out of 9 in the Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Particulate Methane Monooxygeanse Treated with Potassium Cyanide and Copper Reloaded within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cu301

b:184.9
occ:1.00
 NE2 K:HIS231 2.1 150.0 1.0
OD1 K:ASN227 2.1 150.7 1.0
NE2 K:HIS245 2.2 144.7 1.0
CD2 K:HIS245 2.7 144.7 1.0
CD2 K:HIS231 3.0 150.0 1.0
CE1 K:HIS231 3.0 150.0 1.0
CG K:ASN227 3.3 150.7 1.0
CE1 K:HIS245 3.4 144.7 1.0
NH2 K:ARG165 3.7 151.9 1.0
CB K:ASN227 4.0 150.7 1.0
CG K:HIS245 4.0 144.7 1.0
ND1 K:HIS231 4.1 150.0 1.0
CG K:HIS231 4.1 150.0 1.0
CZ K:ARG165 4.2 151.9 1.0
ND1 K:HIS245 4.3 144.7 1.0
NH1 K:ARG165 4.3 151.9 1.0
ND2 K:ASN227 4.3 150.7 1.0
OE2 K:GLU238 4.7 140.3 1.0
CD1 K:LEU244 4.9 147.4 1.0

Reference:

F.J.Tucci, R.J.Jodts, B.M.Hoffman, A.C.Rosenzweig. Product Analogue Binding Identifies the Copper Active Site of Particulate Methane Monooyxgenase Nat Catal 2023.
ISSN: ESSN 2520-1158
Page generated: Wed Jul 31 10:17:15 2024

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