Copper in PDB 8sr1: Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound

The structure of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound also contains other interesting chemical elements:

Fluorine

(F)

9 atoms

The binding sites of Copper atom in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound (pdb code 8sr1). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 9 binding sites of Copper where determined in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound, PDB code: 8sr1:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Copper binding site 1 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu501 b:53.6 occ:1.00 ND1 A:HIS33 2.0 49.3 1.0 NE2 A:HIS139 2.1 37.0 1.0 ND1 A:HIS137 2.3 37.0 1.0 N A:HIS33 2.6 49.3 1.0 CG A:HIS33 2.9 49.3 1.0 CD2 A:HIS139 2.9 37.0 1.0 CE1 A:HIS33 3.0 49.3 1.0 CA A:HIS33 3.0 49.3 1.0 CB A:HIS33 3.1 49.3 1.0 CE1 A:HIS139 3.2 37.0 1.0 CG A:HIS137 3.2 37.0 1.0 CE1 A:HIS137 3.4 37.0 1.0 CB A:HIS137 3.4 37.0 1.0 O A:HOH649 3.6 38.4 1.0 O A:HOH638 3.8 38.4 1.0 CD2 A:HIS33 4.0 49.3 1.0 NE2 A:HIS33 4.0 49.3 1.0 CG A:HIS139 4.1 37.0 1.0 O A:HIS137 4.1 37.0 1.0 ND1 A:HIS139 4.2 37.0 1.0 CD2 A:HIS137 4.4 37.0 1.0 NE2 A:HIS137 4.4 37.0 1.0 C A:HIS33 4.5 49.3 1.0 C A:HIS137 4.6 37.0 1.0 CA A:HIS137 4.6 37.0 1.0 N A:GLY34 4.9 43.1 1.0 OE1 A:GLU35 4.9 43.7 1.0

Copper binding site 2 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu502 b:56.2 occ:1.00 ND1 A:HIS72 2.1 37.0 1.0 ND1 A:HIS48 2.1 37.4 1.0 OE1 A:GLN404 2.4 43.9 1.0 CE1 A:HIS48 2.8 37.4 1.0 CG A:HIS48 3.0 37.4 1.0 CE1 A:HIS72 3.0 37.0 1.0 CG A:HIS72 3.1 37.0 1.0 O A:HIS72 3.4 37.0 1.0 CB A:HIS72 3.4 37.0 1.0 CB A:HIS48 3.5 37.4 1.0 CD A:GLN404 3.6 43.9 1.0 C A:HIS72 3.9 37.0 1.0 NE2 A:HIS48 3.9 37.4 1.0 CD2 A:HIS48 4.0 37.4 1.0 CA A:PHE74 4.0 38.1 1.0 CD2 A:LEU390 4.1 40.9 1.0 N A:PHE74 4.1 38.1 1.0 NE2 A:HIS72 4.1 37.0 1.0 CD2 A:HIS72 4.2 37.0 1.0 CB A:PHE74 4.2 38.1 1.0 N A:HIS48 4.2 37.4 1.0 CA A:HIS72 4.2 37.0 1.0 NE2 A:GLN404 4.3 43.9 1.0 CD1 A:PHE74 4.4 38.1 1.0 C A:VAL73 4.4 37.2 1.0 CA A:HIS48 4.5 37.4 1.0 N A:VAL73 4.6 37.2 1.0 O A:VAL73 4.6 37.2 1.0 CG A:GLN404 4.7 43.9 1.0 CG A:LEU390 4.7 40.9 1.0 CG A:PHE74 4.8 38.1 1.0 CD1 A:LEU390 5.0 40.9 1.0 N A:HIS72 5.0 37.0 1.0

Copper binding site 3 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu301 b:91.1 occ:1.00 H7 C:WIY310 1.6 0.5 0.0 NE2 C:HIS245 1.9 36.6 1.0 NE2 C:HIS231 2.0 38.8 1.0 O1 C:WIY310 2.1 0.5 1.0 OD1 C:ASN227 2.2 37.5 1.0 CE1 C:HIS231 2.3 38.8 1.0 CE1 C:HIS245 2.7 36.6 1.0 CD2 C:HIS245 3.0 36.6 1.0 C4 C:WIY310 3.1 0.5 1.0 H6 C:WIY310 3.2 0.5 1.0 CD2 C:HIS231 3.3 38.8 1.0 CG C:ASN227 3.3 37.5 1.0 ND1 C:HIS231 3.6 38.8 1.0 H1 C:WIY310 3.6 0.5 1.0 H3 C:WIY310 3.6 0.5 1.0 C3 C:WIY310 3.7 0.5 1.0 O C:HOH402 3.7 30.0 1.0 CD1 C:LEU244 3.8 38.1 1.0 ND1 C:HIS245 3.8 36.6 1.0 H5 C:WIY310 3.9 0.5 1.0 ND2 C:ASN227 3.9 37.5 1.0 CG C:HIS245 4.0 36.6 1.0 CG C:HIS231 4.0 38.8 1.0 F3 C:WIY310 4.1 0.5 1.0 C2 C:WIY310 4.1 0.5 1.0 CB C:ASN227 4.4 37.5 1.0 CG C:LEU244 4.4 38.1 1.0 CD2 C:LEU244 4.5 38.1 1.0 CD1 C:PHE240 4.6 35.5 1.0 CE1 C:PHE240 4.6 35.5 1.0 H4 C:WIY310 4.7 0.5 1.0 C1 C:WIY310 4.7 0.5 1.0 CA C:ASN227 4.8 37.5 1.0 H2 C:WIY310 5.0 0.5 1.0

Copper binding site 4 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ E:Cu501 b:53.6 occ:1.00 ND1 E:HIS33 2.0 49.3 1.0 NE2 E:HIS139 2.1 37.0 1.0 ND1 E:HIS137 2.3 37.0 1.0 N E:HIS33 2.6 49.3 1.0 CG E:HIS33 2.9 49.3 1.0 CD2 E:HIS139 2.9 37.0 1.0 CE1 E:HIS33 3.0 49.3 1.0 CA E:HIS33 3.0 49.3 1.0 CB E:HIS33 3.1 49.3 1.0 CE1 E:HIS139 3.2 37.0 1.0 CG E:HIS137 3.2 37.0 1.0 CE1 E:HIS137 3.4 37.0 1.0 CB E:HIS137 3.4 37.0 1.0 O E:HOH638 3.6 38.4 1.0 O E:HOH639 3.8 38.4 1.0 CD2 E:HIS33 4.0 49.3 1.0 NE2 E:HIS33 4.0 49.3 1.0 O E:HIS137 4.1 37.0 1.0 CG E:HIS139 4.1 37.0 1.0 ND1 E:HIS139 4.2 37.0 1.0 CD2 E:HIS137 4.4 37.0 1.0 NE2 E:HIS137 4.4 37.0 1.0 C E:HIS33 4.5 49.3 1.0 O E:HOH669 4.5 38.4 1.0 C E:HIS137 4.6 37.0 1.0 CA E:HIS137 4.6 37.0 1.0 N E:GLY34 4.9 43.1 1.0 OE1 E:GLU35 4.9 43.7 1.0

Copper binding site 5 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ E:Cu502 b:56.2 occ:1.00 ND1 E:HIS72 2.1 37.0 1.0 ND1 E:HIS48 2.1 37.4 1.0 OE1 E:GLN404 2.4 43.9 1.0 CE1 E:HIS48 2.8 37.4 1.0 CG E:HIS48 3.0 37.4 1.0 CE1 E:HIS72 3.0 37.0 1.0 CG E:HIS72 3.1 37.0 1.0 O E:HIS72 3.4 37.0 1.0 CB E:HIS72 3.4 37.0 1.0 CB E:HIS48 3.5 37.4 1.0 CD E:GLN404 3.6 43.9 1.0 C E:HIS72 3.9 37.0 1.0 NE2 E:HIS48 3.9 37.4 1.0 CD2 E:HIS48 4.0 37.4 1.0 CA E:PHE74 4.0 38.1 1.0 CD2 E:LEU390 4.1 40.9 1.0 N E:PHE74 4.1 38.1 1.0 NE2 E:HIS72 4.1 37.0 1.0 CD2 E:HIS72 4.2 37.0 1.0 CB E:PHE74 4.2 38.1 1.0 N E:HIS48 4.2 37.4 1.0 CA E:HIS72 4.2 37.0 1.0 NE2 E:GLN404 4.3 43.9 1.0 CD1 E:PHE74 4.4 38.1 1.0 C E:VAL73 4.4 37.2 1.0 CA E:HIS48 4.5 37.4 1.0 N E:VAL73 4.6 37.2 1.0 O E:VAL73 4.6 37.2 1.0 CG E:GLN404 4.7 43.9 1.0 CG E:LEU390 4.7 40.9 1.0 CG E:PHE74 4.8 38.1 1.0 CD1 E:LEU390 5.0 40.9 1.0 N E:HIS72 5.0 37.0 1.0

Copper binding site 6 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ I:Cu501 b:53.6 occ:1.00 ND1 I:HIS33 2.0 49.3 1.0 NE2 I:HIS139 2.1 37.0 1.0 ND1 I:HIS137 2.3 37.0 1.0 N I:HIS33 2.6 49.3 1.0 CG I:HIS33 2.9 49.3 1.0 CD2 I:HIS139 2.9 37.0 1.0 CE1 I:HIS33 3.0 49.3 1.0 CA I:HIS33 3.0 49.3 1.0 CB I:HIS33 3.1 49.3 1.0 CE1 I:HIS139 3.2 37.0 1.0 CG I:HIS137 3.2 37.0 1.0 CE1 I:HIS137 3.3 37.0 1.0 CB I:HIS137 3.4 37.0 1.0 O I:HOH640 3.5 38.4 1.0 O I:HOH639 3.8 38.4 1.0 CD2 I:HIS33 4.0 49.3 1.0 NE2 I:HIS33 4.0 49.3 1.0 CG I:HIS139 4.1 37.0 1.0 O I:HIS137 4.1 37.0 1.0 ND1 I:HIS139 4.2 37.0 1.0 CD2 I:HIS137 4.4 37.0 1.0 NE2 I:HIS137 4.4 37.0 1.0 C I:HIS33 4.5 49.3 1.0 C I:HIS137 4.6 37.0 1.0 CA I:HIS137 4.6 37.0 1.0 N I:GLY34 4.9 43.1 1.0 OE1 I:GLU35 4.9 43.7 1.0

Copper binding site 7 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ I:Cu502 b:56.2 occ:1.00 ND1 I:HIS72 2.1 37.0 1.0 ND1 I:HIS48 2.1 37.4 1.0 OE1 I:GLN404 2.4 43.9 1.0 CE1 I:HIS48 2.8 37.4 1.0 CG I:HIS48 3.0 37.4 1.0 CE1 I:HIS72 3.0 37.0 1.0 CG I:HIS72 3.1 37.0 1.0 O I:HIS72 3.4 37.0 1.0 CB I:HIS72 3.4 37.0 1.0 CB I:HIS48 3.5 37.4 1.0 CD I:GLN404 3.6 43.9 1.0 C I:HIS72 3.9 37.0 1.0 NE2 I:HIS48 3.9 37.4 1.0 CD2 I:HIS48 4.0 37.4 1.0 CA I:PHE74 4.0 38.1 1.0 CD2 I:LEU390 4.1 40.9 1.0 N I:PHE74 4.1 38.1 1.0 NE2 I:HIS72 4.1 37.0 1.0 CD2 I:HIS72 4.2 37.0 1.0 CB I:PHE74 4.2 38.1 1.0 N I:HIS48 4.2 37.4 1.0 CA I:HIS72 4.2 37.0 1.0 NE2 I:GLN404 4.3 43.9 1.0 CD1 I:PHE74 4.4 38.1 1.0 C I:VAL73 4.4 37.2 1.0 CA I:HIS48 4.5 37.4 1.0 N I:VAL73 4.6 37.2 1.0 O I:VAL73 4.6 37.2 1.0 CG I:GLN404 4.7 43.9 1.0 CG I:LEU390 4.7 40.9 1.0 CG I:PHE74 4.8 38.1 1.0 CD1 I:LEU390 5.0 40.9 1.0 N I:HIS72 5.0 37.0 1.0

Copper binding site 8 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ G:Cu302 b:91.1 occ:1.00 H7 G:WIY311 1.6 0.5 0.0 NE2 G:HIS245 1.9 36.6 1.0 NE2 G:HIS231 2.0 38.8 1.0 O1 G:WIY311 2.1 0.5 1.0 OD1 G:ASN227 2.2 37.5 1.0 CE1 G:HIS231 2.3 38.8 1.0 CE1 G:HIS245 2.7 36.6 1.0 CD2 G:HIS245 3.0 36.6 1.0 C4 G:WIY311 3.1 0.5 1.0 H6 G:WIY311 3.2 0.5 1.0 CD2 G:HIS231 3.3 38.8 1.0 CG G:ASN227 3.3 37.5 1.0 ND1 G:HIS231 3.6 38.8 1.0 H1 G:WIY311 3.6 0.5 1.0 H3 G:WIY311 3.6 0.5 1.0 C3 G:WIY311 3.7 0.5 1.0 O G:HOH401 3.7 30.0 1.0 CD1 G:LEU244 3.8 38.1 1.0 ND1 G:HIS245 3.8 36.6 1.0 H5 G:WIY311 3.9 0.5 1.0 ND2 G:ASN227 3.9 37.5 1.0 CG G:HIS245 4.0 36.6 1.0 CG G:HIS231 4.1 38.8 1.0 F3 G:WIY311 4.1 0.5 1.0 C2 G:WIY311 4.1 0.5 1.0 CB G:ASN227 4.4 37.5 1.0 CG G:LEU244 4.4 38.1 1.0 CD2 G:LEU244 4.5 38.1 1.0 CD1 G:PHE240 4.6 35.5 1.0 CE1 G:PHE240 4.6 35.5 1.0 H4 G:WIY311 4.7 0.5 1.0 C1 G:WIY311 4.7 0.5 1.0 CA G:ASN227 4.8 37.5 1.0 H2 G:WIY311 5.0 0.5 1.0

Copper binding site 9 out of 9 in the Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Particulate Methane Monooxygenase Crosslinked with 4,4,4- Trifluorobutanol Bound within 5.0Å range: probe atom residue distance (Å) B Occ K:Cu302 b:91.1 occ:1.00 H7 K:WIY311 1.6 0.5 0.0 NE2 K:HIS245 1.9 36.6 1.0 NE2 K:HIS231 2.0 38.8 1.0 O1 K:WIY311 2.1 0.5 1.0 OD1 K:ASN227 2.2 37.5 1.0 CE1 K:HIS231 2.3 38.8 1.0 CE1 K:HIS245 2.7 36.6 1.0 CD2 K:HIS245 3.0 36.6 1.0 C4 K:WIY311 3.1 0.5 1.0 H6 K:WIY311 3.2 0.5 1.0 CD2 K:HIS231 3.3 38.8 1.0 CG K:ASN227 3.3 37.5 1.0 ND1 K:HIS231 3.6 38.8 1.0 H1 K:WIY311 3.6 0.5 1.0 H3 K:WIY311 3.6 0.5 1.0 C3 K:WIY311 3.7 0.5 1.0 O K:HOH401 3.7 30.0 1.0 CD1 K:LEU244 3.8 38.1 1.0 ND1 K:HIS245 3.8 36.6 1.0 H5 K:WIY311 3.9 0.5 1.0 ND2 K:ASN227 3.9 37.5 1.0 CG K:HIS245 4.0 36.6 1.0 CG K:HIS231 4.0 38.8 1.0 F3 K:WIY311 4.1 0.5 1.0 C2 K:WIY311 4.1 0.5 1.0 CB K:ASN227 4.4 37.5 1.0 CG K:LEU244 4.4 38.1 1.0 CD2 K:LEU244 4.5 38.1 1.0 CD1 K:PHE240 4.6 35.5 1.0 CE1 K:PHE240 4.6 35.5 1.0 H4 K:WIY311 4.7 0.5 1.0 C1 K:WIY311 4.7 0.5 1.0 CA K:ASN227 4.8 37.5 1.0 H2 K:WIY311 5.0 0.5 1.0

F.J.Tucci, R.J.Jodts, B.M.Hoffman, A.C.Rosenzweig. Product Analogue Binding Identifies the Copper Active Site of Particulate Methane Monooyxgenase Nat Catal 2023.
ISSN: ESSN 2520-1158