Atomistry » Copper » PDB 8gcq-8po9 » 8ovc
Atomistry »
  Copper »
    PDB 8gcq-8po9 »
      8ovc »

Copper in PDB 8ovc: Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis

Enzymatic activity of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis

All present enzymatic activity of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis:
1.15.1.1; 7.1.1.8; 7.1.1.9;

Other elements in 8ovc:

The structure of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis also contains other interesting chemical elements:

Iron (Fe) 16 atoms
Magnesium (Mg) 2 atoms
Calcium (Ca) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis (pdb code 8ovc). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis, PDB code: 8ovc:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in 8ovc

Go back to Copper Binding Sites List in 8ovc
Copper binding site 1 out of 6 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cu604

b:22.2
occ:1.00
NE2 R:HIS314 1.9 18.4 1.0
NE2 R:HIS313 2.0 17.7 1.0
ND1 R:HIS264 2.0 13.3 1.0
CE1 R:HIS264 2.3 13.5 1.0
CD2 R:HIS313 2.4 17.8 1.0
CD2 R:HIS314 2.5 18.3 1.0
CE1 R:HIS314 2.9 18.3 1.0
CE1 R:HIS313 3.2 17.7 1.0
CG R:HIS264 3.2 13.2 1.0
NE2 R:HIS264 3.5 13.4 1.0
CG R:HIS314 3.5 18.3 1.0
ND1 R:HIS314 3.7 18.2 1.0
CG R:HIS313 3.7 17.8 1.0
CD2 R:HIS264 3.9 13.3 1.0
C4A R:HEA602 3.9 16.1 1.0
C1A R:HEA602 3.9 16.2 1.0
CB R:HIS264 4.0 13.0 1.0
ND1 R:HIS313 4.0 17.8 1.0
C3A R:HEA602 4.0 16.1 1.0
C2A R:HEA602 4.0 16.2 1.0
NA R:HEA602 4.0 16.1 1.0
FE R:HEA602 4.4 16.1 1.0
CHB R:HEA602 4.6 16.2 1.0
CHA R:HEA602 4.6 16.1 1.0
CMA R:HEA602 4.7 15.9 1.0
N R:HIS314 4.7 18.0 1.0
CAA R:HEA602 4.7 16.4 1.0
CB R:HIS314 4.8 18.2 1.0
OMA R:HEA602 4.8 15.8 1.0
O R:VAL310 4.9 17.6 1.0
ND R:HEA602 4.9 16.2 1.0
CB R:HIS313 5.0 17.8 1.0
NB R:HEA602 5.0 16.3 1.0

Copper binding site 2 out of 6 in 8ovc

Go back to Copper Binding Sites List in 8ovc
Copper binding site 2 out of 6 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu401

b:13.1
occ:1.00
ND1 Q:HIS281 2.0 14.3 1.0
SG Q:CYS277 2.1 14.0 1.0
SG Q:CYS273 2.6 14.3 1.0
CU Q:CU402 2.8 11.1 1.0
CE1 Q:HIS281 2.8 14.3 1.0
N Q:CYS277 2.8 14.1 1.0
CB Q:CYS277 2.8 14.0 1.0
CG Q:HIS281 3.0 14.3 1.0
CA Q:CYS277 3.4 13.9 1.0
CB Q:HIS281 3.5 14.3 1.0
N Q:MET276 3.7 14.5 1.0
C Q:MET276 3.8 14.1 1.0
NE2 Q:HIS281 3.9 14.2 1.0
CA Q:HIS281 4.0 14.4 1.0
CD2 Q:HIS281 4.0 14.3 1.0
CA Q:MET276 4.0 14.3 1.0
N Q:GLU275 4.1 14.6 1.0
CB Q:CYS273 4.1 14.4 1.0
ND1 Q:HIS232 4.2 14.4 1.0
O Q:HIS281 4.3 14.5 1.0
C Q:GLU275 4.3 14.6 1.0
C Q:CYS277 4.4 13.8 1.0
CA Q:GLU275 4.5 14.7 1.0
CB Q:GLU275 4.6 14.9 1.0
SD Q:MET284 4.6 15.1 1.0
C Q:HIS281 4.6 14.5 1.0
N Q:GLY278 4.7 13.7 1.0
C Q:CYS273 4.9 14.5 1.0
O Q:MET276 4.9 14.1 1.0
O Q:CYS273 5.0 14.5 1.0
CE1 Q:HIS232 5.0 14.4 1.0

Copper binding site 3 out of 6 in 8ovc

Go back to Copper Binding Sites List in 8ovc
Copper binding site 3 out of 6 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu402

b:11.1
occ:1.00
ND1 Q:HIS232 2.1 14.4 1.0
SG Q:CYS277 2.3 14.0 1.0
SD Q:MET284 2.3 15.1 1.0
SG Q:CYS273 2.6 14.3 1.0
CU Q:CU401 2.8 13.1 1.0
CE Q:MET284 2.8 15.2 1.0
CE1 Q:HIS232 2.9 14.4 1.0
CG Q:HIS232 3.2 14.5 1.0
CB Q:CYS277 3.3 14.0 1.0
CB Q:HIS232 3.6 14.6 1.0
CB Q:CYS273 3.8 14.4 1.0
CG Q:MET284 4.0 15.3 1.0
NE2 Q:HIS232 4.1 14.4 1.0
CD2 Q:HIS232 4.2 14.4 1.0
CA Q:HIS232 4.4 14.8 1.0
ND1 Q:HIS281 4.4 14.3 1.0
CB Q:MET284 4.5 15.4 1.0
CA Q:CYS277 4.6 13.9 1.0
N Q:CYS277 4.9 14.1 1.0
O Q:PHE136 5.0 20.4 1.0

Copper binding site 4 out of 6 in 8ovc

Go back to Copper Binding Sites List in 8ovc
Copper binding site 4 out of 6 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cu604

b:19.4
occ:1.00
ND1 L:HIS264 2.1 10.9 1.0
NE2 L:HIS314 2.3 14.3 1.0
NE2 L:HIS313 2.5 13.1 1.0
CE1 L:HIS264 2.6 11.0 1.0
CE1 L:HIS314 2.9 14.3 1.0
FE L:HEA602 3.1 16.1 1.0
NA L:HEA602 3.2 16.1 1.0
CD2 L:HIS314 3.3 14.2 1.0
CD2 L:HIS313 3.4 13.2 1.0
C4A L:HEA602 3.4 16.1 1.0
C1A L:HEA602 3.4 16.2 1.0
CE1 L:HIS313 3.5 13.1 1.0
CG L:HIS264 3.5 10.8 1.0
ND L:HEA602 3.8 16.2 1.0
NE2 L:HIS264 3.9 11.0 1.0
NB L:HEA602 3.9 16.3 1.0
C3A L:HEA602 4.0 16.1 1.0
C2A L:HEA602 4.0 16.2 1.0
ND1 L:HIS314 4.0 14.1 1.0
CHA L:HEA602 4.1 16.1 1.0
CHB L:HEA602 4.1 16.2 1.0
CB L:HIS264 4.2 10.7 1.0
C4D L:HEA602 4.2 16.2 1.0
CG L:HIS314 4.2 14.1 1.0
C1B L:HEA602 4.3 16.3 1.0
CD2 L:HIS264 4.3 10.9 1.0
NC L:HEA602 4.5 16.2 1.0
CG L:HIS313 4.5 13.2 1.0
ND1 L:HIS313 4.5 13.1 1.0
C1D L:HEA602 4.8 16.2 1.0
C4B L:HEA602 4.9 16.4 1.0
CG2 L:VAL267 4.9 10.9 1.0
CMA L:HEA602 4.9 15.9 1.0
CA L:HIS264 5.0 10.5 1.0
CAA L:HEA602 5.0 16.4 1.0

Copper binding site 5 out of 6 in 8ovc

Go back to Copper Binding Sites List in 8ovc
Copper binding site 5 out of 6 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cu401

b:12.5
occ:1.00
ND1 X:HIS281 2.0 11.0 1.0
O X:GLU275 2.2 11.1 1.0
SG X:CYS277 2.3 10.2 1.0
SG X:CYS273 2.4 12.1 1.0
CE1 X:HIS281 2.7 11.0 1.0
CU X:CU402 2.7 8.1 1.0
CG X:HIS281 3.1 11.0 1.0
CB X:CYS277 3.3 10.3 1.0
C X:GLU275 3.3 11.0 1.0
N X:CYS277 3.6 10.4 1.0
CB X:CYS273 3.7 12.1 1.0
CB X:HIS281 3.8 11.1 1.0
NE2 X:HIS281 3.9 11.0 1.0
CA X:HIS281 4.0 11.1 1.0
N X:GLU275 4.0 11.3 1.0
CA X:CYS277 4.0 10.3 1.0
CD2 X:HIS281 4.1 11.0 1.0
C X:MET276 4.1 10.6 1.0
O X:HIS281 4.1 11.2 1.0
N X:MET276 4.2 10.8 1.0
CA X:GLU275 4.2 11.2 1.0
CA X:MET276 4.3 10.7 1.0
SD X:MET284 4.3 11.8 1.0
ND1 X:HIS232 4.3 11.4 1.0
C X:HIS281 4.5 11.2 1.0
C X:CYS273 4.7 11.9 1.0
CA X:CYS273 4.8 12.1 1.0
CB X:GLU275 4.8 11.3 1.0
N X:THR274 4.8 11.7 1.0
O X:MET276 4.9 10.6 1.0
CA X:HIS232 4.9 11.8 1.0
O X:ILE231 5.0 11.9 1.0
O X:CYS273 5.0 11.9 1.0

Copper binding site 6 out of 6 in 8ovc

Go back to Copper Binding Sites List in 8ovc
Copper binding site 6 out of 6 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cu402

b:8.1
occ:1.00
ND1 X:HIS232 2.1 11.4 1.0
SD X:MET284 2.3 11.8 1.0
SG X:CYS277 2.5 10.2 1.0
SG X:CYS273 2.6 12.1 1.0
CU X:CU401 2.7 12.5 1.0
CE1 X:HIS232 2.9 11.4 1.0
CE X:MET284 2.9 11.7 1.0
CG X:HIS232 3.2 11.5 1.0
CB X:CYS277 3.5 10.3 1.0
CB X:HIS232 3.7 11.6 1.0
CB X:CYS273 3.8 12.1 1.0
CG X:MET284 3.9 11.9 1.0
NE2 X:HIS232 4.1 11.4 1.0
CD2 X:HIS232 4.2 11.4 1.0
CA X:HIS232 4.3 11.8 1.0
O X:GLU275 4.4 11.1 1.0
ND1 X:HIS281 4.4 11.0 1.0
O X:ILE231 4.9 11.9 1.0
CA X:CYS277 4.9 10.3 1.0
N X:GLY233 5.0 12.0 1.0

Reference:

D.Riepl, A.P.Gamiz-Hernandez, T.Kovalova, S.M.Krol, S.L.Mader, D.Sjostrand, M.Hogbom, P.Brzezinski, V.R.I.Kaila. Long-Range Charge Transfer Mechanism of the III 2 IV 2 Mycobacterial Supercomplex. Nat Commun V. 15 5276 2024.
ISSN: ESSN 2041-1723
PubMed: 38902248
DOI: 10.1038/S41467-024-49628-9
Page generated: Wed Jul 31 09:52:54 2024

Last articles

Ca in 2P5V
Ca in 2P5R
Ca in 2P69
Ca in 2P5W
Ca in 2P1R
Ca in 2P3U
Ca in 2P4P
Ca in 2P3T
Ca in 2P37
Ca in 2P34
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy