Atomistry » Copper » PDB 8gcq-8po9 » 8hua
Atomistry »
  Copper »
    PDB 8gcq-8po9 »
      8hua »

Copper in PDB 8hua: Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell

Enzymatic activity of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell

All present enzymatic activity of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell:
7.1.1.9;

Protein crystallography data

The structure of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell, PDB code: 8hua was solved by S.Ghosh, D.Zoric, M.Bjelcic, J.Johannesson, E.Sandelin, G.Branden, R.Neutze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.80 / 2.12
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 146.06, 100.17, 96.62, 90, 126.76, 90
R / Rfree (%) 15.2 / 18.4

Other elements in 8hua:

The structure of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell (pdb code 8hua). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell, PDB code: 8hua:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 8hua

Go back to Copper Binding Sites List in 8hua
Copper binding site 1 out of 3 in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu601

b:36.6
occ:1.00
 NE2 A:HIS282 1.9 40.3 1.0
ND1 A:HIS233 2.0 34.9 1.0
NE2 A:HIS283 2.0 39.4 1.0
O A:HOH752 2.3 21.6 1.0
CE1 A:HIS282 2.9 40.2 1.0
CG A:HIS233 2.9 34.5 1.0
CE1 A:HIS283 2.9 35.6 1.0
CE1 A:HIS233 3.0 36.4 1.0
CD2 A:HIS282 3.0 40.9 1.0
CD2 A:HIS283 3.0 36.9 1.0
CB A:HIS233 3.2 34.2 1.0
CA A:HIS233 3.6 35.5 1.0
ND1 A:HIS282 4.0 38.8 1.0
ND1 A:HIS283 4.0 35.9 1.0
NE2 A:HIS233 4.1 39.7 1.0
CD2 A:HIS233 4.1 37.8 1.0
CG A:HIS282 4.1 36.0 1.0
CG A:HIS283 4.1 38.5 1.0
ND A:HAS603 4.3 35.7 1.0
C1D A:HAS603 4.4 35.8 1.0
C4D A:HAS603 4.5 30.7 1.0
N A:HIS233 4.5 36.8 1.0
C2D A:HAS603 4.6 34.8 1.0
C A:HIS233 4.6 39.0 1.0
C3D A:HAS603 4.7 33.2 1.0
O A:HIS233 4.7 35.1 1.0
O A:GLY232 4.9 35.2 1.0
CHB A:HAS603 4.9 34.8 1.0
FE A:HAS603 5.0 36.3 1.0

Copper binding site 2 out of 3 in 8hua

Go back to Copper Binding Sites List in 8hua
Copper binding site 2 out of 3 in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu202

b:35.3
occ:1.00
 CU1 B:CUA202 0.0 35.3 1.0
ND1 B:HIS157 1.8 33.9 1.0
SG B:CYS153 2.2 34.2 1.0
SG B:CYS149 2.3 34.8 1.0
O B:GLN151 2.5 35.2 1.0
CE1 B:HIS157 2.5 37.2 1.0
CU2 B:CUA202 2.6 34.9 1.0
CG B:HIS157 3.0 31.1 1.0
CB B:CYS153 3.3 35.9 1.0
CB B:CYS149 3.3 35.9 1.0
N B:CYS153 3.5 38.7 1.0
C B:GLN151 3.5 33.6 1.0
CB B:HIS157 3.6 33.4 1.0
NE2 B:HIS157 3.7 34.3 1.0
CA B:HIS157 3.8 33.5 1.0
CD2 B:HIS157 3.9 31.4 1.0
CA B:CYS153 4.1 37.8 1.0
O B:CYS149 4.1 34.2 1.0
C B:TYR152 4.2 37.8 1.0
O B:HIS157 4.2 34.4 1.0
CA B:TYR152 4.2 37.4 1.0
ND1 B:HIS114 4.3 35.0 1.0
N B:TYR152 4.3 34.5 1.0
C B:CYS149 4.3 35.4 1.0
N B:GLN151 4.3 35.8 1.0
CA B:CYS149 4.4 36.2 1.0
SD B:MET160 4.4 35.2 1.0
C B:HIS157 4.5 32.1 1.0
CA B:GLN151 4.6 34.8 1.0
CB B:MET160 4.8 34.5 1.0
N B:ASN150 4.9 32.2 1.0
N B:HIS157 5.0 32.7 1.0
CE1 B:HIS114 5.0 36.2 1.0

Copper binding site 3 out of 3 in 8hua

Go back to Copper Binding Sites List in 8hua
Copper binding site 3 out of 3 in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu202

b:34.9
occ:1.00
 CU2 B:CUA202 0.0 34.9 1.0
ND1 B:HIS114 2.0 35.0 1.0
SG B:CYS149 2.3 34.8 1.0
SG B:CYS153 2.3 34.2 1.0
SD B:MET160 2.4 35.2 1.0
CU1 B:CUA202 2.6 35.3 1.0
CE1 B:HIS114 2.8 36.2 1.0
CG B:HIS114 3.1 38.2 1.0
CB B:CYS153 3.2 35.9 1.0
CE B:MET160 3.3 34.7 1.0
CB B:CYS149 3.3 35.9 1.0
CB B:HIS114 3.5 40.4 1.0
CG B:MET160 3.8 36.6 1.0
CA B:HIS114 4.0 38.2 1.0
NE2 B:HIS114 4.0 35.4 1.0
O B:GLN151 4.1 35.2 1.0
CD2 B:HIS114 4.1 35.1 1.0
CB B:MET160 4.2 34.5 1.0
ND1 B:HIS157 4.3 33.9 1.0
CA B:CYS153 4.6 37.8 1.0
CA B:CYS149 4.7 36.2 1.0
N B:GLY115 4.7 36.6 1.0
O B:ILE113 4.7 35.7 1.0
CD1 B:PHE88 4.9 36.7 1.0
N B:CYS153 4.9 38.7 1.0
CE1 B:HIS157 4.9 37.2 1.0
C B:HIS114 4.9 34.8 1.0

Reference:

S.Ghosh, D.Zoric, M.Bjelcic, J.Johannesson, E.Sandelin, P.Borjesson, P.Dahl, G.Branden, R.Neutze. A Simple Goniometer-Compatible Flow-Cell For Serial Synchrotron Crystallography J.Appl.Crystallogr. 2023.
ISSN: ESSN 1600-5767
Page generated: Wed Jul 31 09:47:16 2024

Last articles

Cl in 3FN9
Cl in 3FJ1
Cl in 3FLB
Cl in 3FM5
Cl in 3FLA
Cl in 3FL7
Cl in 3FKO
Cl in 3FKQ
Cl in 3FI5
Cl in 3FKN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy