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Copper in PDB 8hua: Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell

Enzymatic activity of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell

All present enzymatic activity of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell:
7.1.1.9;

Protein crystallography data

The structure of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell, PDB code: 8hua was solved by S.Ghosh, D.Zoric, M.Bjelcic, J.Johannesson, E.Sandelin, G.Branden, R.Neutze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.80 / 2.12
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 146.06, 100.17, 96.62, 90, 126.76, 90
R / Rfree (%) 15.2 / 18.4

Other elements in 8hua:

The structure of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell (pdb code 8hua). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell, PDB code: 8hua:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 8hua

Go back to Copper Binding Sites List in 8hua
Copper binding site 1 out of 3 in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu601

b:36.6
occ:1.00
 NE2 A:HIS282 1.9 40.3 1.0
ND1 A:HIS233 2.0 34.9 1.0
NE2 A:HIS283 2.0 39.4 1.0
O A:HOH752 2.3 21.6 1.0
CE1 A:HIS282 2.9 40.2 1.0
CG A:HIS233 2.9 34.5 1.0
CE1 A:HIS283 2.9 35.6 1.0
CE1 A:HIS233 3.0 36.4 1.0
CD2 A:HIS282 3.0 40.9 1.0
CD2 A:HIS283 3.0 36.9 1.0
CB A:HIS233 3.2 34.2 1.0
CA A:HIS233 3.6 35.5 1.0
ND1 A:HIS282 4.0 38.8 1.0
ND1 A:HIS283 4.0 35.9 1.0
NE2 A:HIS233 4.1 39.7 1.0
CD2 A:HIS233 4.1 37.8 1.0
CG A:HIS282 4.1 36.0 1.0
CG A:HIS283 4.1 38.5 1.0
ND A:HAS603 4.3 35.7 1.0
C1D A:HAS603 4.4 35.8 1.0
C4D A:HAS603 4.5 30.7 1.0
N A:HIS233 4.5 36.8 1.0
C2D A:HAS603 4.6 34.8 1.0
C A:HIS233 4.6 39.0 1.0
C3D A:HAS603 4.7 33.2 1.0
O A:HIS233 4.7 35.1 1.0
O A:GLY232 4.9 35.2 1.0
CHB A:HAS603 4.9 34.8 1.0
FE A:HAS603 5.0 36.3 1.0

Copper binding site 2 out of 3 in 8hua

Go back to Copper Binding Sites List in 8hua
Copper binding site 2 out of 3 in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu202

b:35.3
occ:1.00
 CU1 B:CUA202 0.0 35.3 1.0
ND1 B:HIS157 1.8 33.9 1.0
SG B:CYS153 2.2 34.2 1.0
SG B:CYS149 2.3 34.8 1.0
O B:GLN151 2.5 35.2 1.0
CE1 B:HIS157 2.5 37.2 1.0
CU2 B:CUA202 2.6 34.9 1.0
CG B:HIS157 3.0 31.1 1.0
CB B:CYS153 3.3 35.9 1.0
CB B:CYS149 3.3 35.9 1.0
N B:CYS153 3.5 38.7 1.0
C B:GLN151 3.5 33.6 1.0
CB B:HIS157 3.6 33.4 1.0
NE2 B:HIS157 3.7 34.3 1.0
CA B:HIS157 3.8 33.5 1.0
CD2 B:HIS157 3.9 31.4 1.0
CA B:CYS153 4.1 37.8 1.0
O B:CYS149 4.1 34.2 1.0
C B:TYR152 4.2 37.8 1.0
O B:HIS157 4.2 34.4 1.0
CA B:TYR152 4.2 37.4 1.0
ND1 B:HIS114 4.3 35.0 1.0
N B:TYR152 4.3 34.5 1.0
C B:CYS149 4.3 35.4 1.0
N B:GLN151 4.3 35.8 1.0
CA B:CYS149 4.4 36.2 1.0
SD B:MET160 4.4 35.2 1.0
C B:HIS157 4.5 32.1 1.0
CA B:GLN151 4.6 34.8 1.0
CB B:MET160 4.8 34.5 1.0
N B:ASN150 4.9 32.2 1.0
N B:HIS157 5.0 32.7 1.0
CE1 B:HIS114 5.0 36.2 1.0

Copper binding site 3 out of 3 in 8hua

Go back to Copper Binding Sites List in 8hua
Copper binding site 3 out of 3 in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu202

b:34.9
occ:1.00
 CU2 B:CUA202 0.0 34.9 1.0
ND1 B:HIS114 2.0 35.0 1.0
SG B:CYS149 2.3 34.8 1.0
SG B:CYS153 2.3 34.2 1.0
SD B:MET160 2.4 35.2 1.0
CU1 B:CUA202 2.6 35.3 1.0
CE1 B:HIS114 2.8 36.2 1.0
CG B:HIS114 3.1 38.2 1.0
CB B:CYS153 3.2 35.9 1.0
CE B:MET160 3.3 34.7 1.0
CB B:CYS149 3.3 35.9 1.0
CB B:HIS114 3.5 40.4 1.0
CG B:MET160 3.8 36.6 1.0
CA B:HIS114 4.0 38.2 1.0
NE2 B:HIS114 4.0 35.4 1.0
O B:GLN151 4.1 35.2 1.0
CD2 B:HIS114 4.1 35.1 1.0
CB B:MET160 4.2 34.5 1.0
ND1 B:HIS157 4.3 33.9 1.0
CA B:CYS153 4.6 37.8 1.0
CA B:CYS149 4.7 36.2 1.0
N B:GLY115 4.7 36.6 1.0
O B:ILE113 4.7 35.7 1.0
CD1 B:PHE88 4.9 36.7 1.0
N B:CYS153 4.9 38.7 1.0
CE1 B:HIS157 4.9 37.2 1.0
C B:HIS114 4.9 34.8 1.0

Reference:

S.Ghosh, D.Zoric, M.Bjelcic, J.Johannesson, E.Sandelin, P.Borjesson, P.Dahl, G.Branden, R.Neutze. A Simple Goniometer-Compatible Flow-Cell For Serial Synchrotron Crystallography J.Appl.Crystallogr. 2023.
ISSN: ESSN 1600-5767
Page generated: Wed Jul 31 09:47:16 2024

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