Copper in PDB 8gul: Chitin-Active AA10 Lpmo (Gbpa) Complexed with Cu(II) From Vibrio Campbellii

The structure of Chitin-Active AA10 Lpmo (Gbpa) Complexed with Cu(II) From Vibrio Campbellii, PDB code: 8gul was solved by Y.Zhou, R.C.Robinson, W.Suginta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.78 / 2.44
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	113.433, 113.433, 213.761, 90, 90, 90
R / Rfree (%)	20.5 / 24

The binding sites of Copper atom in the Chitin-Active AA10 Lpmo (Gbpa) Complexed with Cu(II) From Vibrio Campbellii (pdb code 8gul). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Chitin-Active AA10 Lpmo (Gbpa) Complexed with Cu(II) From Vibrio Campbellii, PDB code: 8gul:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Chitin-Active AA10 Lpmo (Gbpa) Complexed with Cu(II) From Vibrio Campbellii


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Chitin-Active AA10 Lpmo (Gbpa) Complexed with Cu(II) From Vibrio Campbellii within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu501 b:47.2 occ:0.50 ND1 A:HIS1 2.0 55.4 1.0 N A:HIS1 2.1 54.3 1.0 NE2 A:HIS98 2.2 67.5 1.0 CD2 A:HIS98 2.8 58.3 1.0 CG A:HIS1 2.9 52.1 1.0 CE1 A:HIS1 2.9 49.0 1.0 O B:HOH629 3.0 58.1 1.0 CA A:HIS1 3.1 46.8 1.0 CB A:HIS1 3.2 45.4 1.0 CE1 A:HIS98 3.4 65.7 1.0 CZ A:PHE170 3.6 52.6 1.0 CB A:ALA96 3.8 53.3 1.0 CD2 A:HIS1 4.0 55.4 1.0 NE2 A:HIS1 4.0 56.1 1.0 CG A:HIS98 4.0 55.4 1.0 CE1 A:PHE170 4.1 52.6 1.0 ND1 A:HIS98 4.3 64.1 1.0 O A:ALA96 4.3 44.0 1.0 C A:HIS1 4.4 52.6 1.0 OE2 B:GLU216 4.4 76.2 1.0 CE2 A:PHE170 4.6 46.2 1.0 O B:HOH679 4.7 48.3 1.0 O A:HIS1 4.8 52.7 1.0 CA A:ALA96 4.9 52.0 1.0 NH2 B:ARG209 4.9 47.1 1.0

Copper binding site 2 out of 2 in the Chitin-Active AA10 Lpmo (Gbpa) Complexed with Cu(II) From Vibrio Campbellii


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Chitin-Active AA10 Lpmo (Gbpa) Complexed with Cu(II) From Vibrio Campbellii within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu501 b:48.7 occ:0.51 ND1 B:HIS1 2.0 48.9 1.0 N B:HIS1 2.1 43.9 1.0 NE2 B:HIS98 2.2 72.2 1.0 O B:HOH668 2.8 63.7 1.0 CD2 B:HIS98 2.8 63.3 1.0 CG B:HIS1 2.8 46.9 1.0 CE1 B:HIS1 2.8 44.0 1.0 CA B:HIS1 3.1 47.1 1.0 CB B:HIS1 3.3 48.6 1.0 CE1 B:HIS98 3.3 77.9 1.0 CZ B:PHE170 3.5 50.3 1.0 NE2 B:HIS1 3.8 45.6 1.0 CD2 B:HIS1 3.8 41.6 1.0 CE1 B:PHE170 3.9 50.1 1.0 CG B:HIS98 4.0 69.7 1.0 CB B:ALA96 4.1 55.1 1.0 ND1 B:HIS98 4.2 79.7 1.0 O B:ALA96 4.3 54.5 1.0 C B:HIS1 4.5 49.8 1.0 CE2 B:PHE170 4.6 49.7 1.0 OE2 A:GLU216 4.6 67.0 1.0 NH2 A:ARG209 4.7 49.8 1.0 O A:HOH657 4.8 58.8 1.0 O B:HIS1 4.9 54.6 1.0

Y.Zhou, S.Wannapaiboon, M.Prongjit, S.Pornsuwan, J.Sucharitakul, N.Kamonsutthipaijit, R.C.Robinson, W.Suginta. Structural and Binding Studies of A New Chitin-Active AA10 Lytic Polysaccharide Monooxygenase From the Marine Bacterium Vibrio Campbellii. Acta Crystallogr D Struct V. 79 479 2023BIOL.
ISSN: ISSN 2059-7983
PubMed: 37259836
DOI: 10.1107/S2059798323003261