Atomistry » Copper » PDB 8bae-8gbt » 8e7s
Atomistry »
  Copper »
    PDB 8bae-8gbt »
      8e7s »

Copper in PDB 8e7s: III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6

Enzymatic activity of III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6

All present enzymatic activity of III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6:
7.1.1.8; 7.1.1.9;

Other elements in 8e7s:

The structure of III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6 also contains other interesting chemical elements:

Iron (Fe) 14 atoms

Copper Binding Sites:

The binding sites of Copper atom in the III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6 (pdb code 8e7s). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6, PDB code: 8e7s:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in 8e7s

Go back to Copper Binding Sites List in 8e7s
Copper binding site 1 out of 6 in the III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cu602

b:253.9
occ:1.00
NE2 K:HIS291 2.0 253.5 1.0
NE2 K:HIS290 2.0 254.3 1.0
ND1 K:HIS241 2.0 254.7 1.0
CE1 K:HIS290 2.1 254.3 1.0
CE1 K:HIS291 2.2 253.5 1.0
CE1 K:HIS241 2.4 254.7 1.0
CD2 K:HIS291 3.0 253.5 1.0
ND1 K:HIS291 3.2 253.5 1.0
CG K:HIS241 3.3 254.7 1.0
ND1 K:HIS290 3.4 254.3 1.0
CD2 K:HIS290 3.4 254.3 1.0
CG K:HIS291 3.6 253.5 1.0
NE2 K:HIS241 3.6 254.7 1.0
CG K:HIS290 4.0 254.3 1.0
CD2 K:HIS241 4.1 254.7 1.0
CB K:HIS241 4.2 254.7 1.0
NA K:HEA601 4.4 196.6 1.0
C4A K:HEA601 4.4 196.6 1.0
C1A K:HEA601 4.5 196.6 1.0
C3A K:HEA601 4.6 196.6 1.0
C2A K:HEA601 4.7 196.6 1.0
CA K:HIS241 4.7 254.7 1.0
CHB K:HEA601 4.9 196.6 1.0
OMA K:HEA601 4.9 196.6 1.0
CB K:HIS291 5.0 253.5 1.0

Copper binding site 2 out of 6 in 8e7s

Go back to Copper Binding Sites List in 8e7s
Copper binding site 2 out of 6 in the III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6 within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cu301

b:245.3
occ:1.00
CE1 P:HIS229 1.8 196.5 1.0
ND1 P:HIS229 2.0 196.5 1.0
CE P:MET232 2.5 194.3 1.0
SG P:CYS225 2.6 191.9 1.0
CU2 P:CUA302 2.7 228.1 1.0
SD P:MET232 2.8 194.3 1.0
CE1 P:HIS186 2.8 196.9 1.0
CG P:MET232 2.9 194.3 1.0
ND1 P:HIS186 3.0 196.9 1.0
NE2 P:HIS229 3.1 196.5 1.0
CG P:HIS229 3.4 196.5 1.0
CB P:CYS225 3.6 191.9 1.0
CB P:MET232 3.8 194.3 1.0
CD2 P:HIS229 3.8 196.5 1.0
CB P:CYS221 3.8 216.1 1.0
SG P:CYS221 4.1 216.1 1.0
NE2 P:HIS186 4.1 196.9 1.0
CG P:HIS186 4.4 196.9 1.0
CB P:HIS229 4.5 196.5 1.0
O P:GLU223 4.6 205.7 1.0
CA P:HIS229 4.7 196.5 1.0
CA P:TRP124 4.7 166.2 1.0
NE1 P:TRP126 4.8 178.3 1.0
CA P:MET232 4.9 194.3 1.0
CD2 P:HIS186 4.9 196.9 1.0
CA P:CYS225 4.9 191.9 1.0

Copper binding site 3 out of 6 in 8e7s

Go back to Copper Binding Sites List in 8e7s
Copper binding site 3 out of 6 in the III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6 within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cu302

b:228.1
occ:1.00
SG P:CYS225 2.0 191.9 1.0
ND1 P:HIS186 2.0 196.9 1.0
SG P:CYS221 2.3 216.1 1.0
CE1 P:HIS229 2.4 196.5 1.0
CU1 P:CUA301 2.7 245.3 1.0
CE1 P:HIS186 2.8 196.9 1.0
CG P:HIS186 2.9 196.9 1.0
O P:GLU223 3.0 205.7 1.0
NE2 P:HIS229 3.1 196.5 1.0
CB P:CYS221 3.3 216.1 1.0
ND1 P:HIS229 3.3 196.5 1.0
CB P:HIS186 3.4 196.9 1.0
CA P:HIS186 3.5 196.9 1.0
NE2 P:HIS186 3.7 196.9 1.0
CB P:CYS225 3.7 191.9 1.0
CD2 P:HIS186 3.8 196.9 1.0
N P:ASP187 4.0 207.8 1.0
C P:GLU223 4.1 205.7 1.0
CD2 P:HIS229 4.2 196.5 1.0
C P:HIS186 4.3 196.9 1.0
O P:ILE185 4.3 197.6 1.0
CG P:HIS229 4.3 196.5 1.0
CB P:GLU223 4.4 205.7 1.0
CA P:CYS225 4.6 191.9 1.0
N P:CYS225 4.6 191.9 1.0
N P:HIS186 4.6 196.9 1.0
CA P:GLU223 4.6 205.7 1.0
CG P:GLU223 4.7 205.7 1.0
N P:GLU223 4.7 205.7 1.0
CA P:CYS221 4.7 216.1 1.0
C P:LEU224 4.7 199.9 1.0
CG P:MET232 4.8 194.3 1.0
O P:LEU224 4.9 199.9 1.0
C P:ILE185 4.9 197.6 1.0
C P:CYS221 4.9 216.1 1.0
O P:CYS221 5.0 216.1 1.0

Copper binding site 4 out of 6 in 8e7s

Go back to Copper Binding Sites List in 8e7s
Copper binding site 4 out of 6 in the III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6 within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Cu601

b:379.1
occ:1.00
CE1 k:HIS290 1.8 324.0 1.0
NE2 k:HIS291 2.0 335.6 1.0
NE2 k:HIS290 2.0 324.0 1.0
ND1 k:HIS241 2.1 340.9 1.0
CE1 k:HIS291 2.4 335.6 1.0
CE1 k:HIS241 2.7 340.9 1.0
CD2 k:HIS291 2.8 335.6 1.0
CG k:HIS241 3.1 340.9 1.0
ND1 k:HIS290 3.1 324.0 1.0
ND1 k:HIS291 3.3 335.6 1.0
CD2 k:HIS290 3.4 324.0 1.0
CG k:HIS291 3.5 335.6 1.0
CB k:HIS241 3.7 340.9 1.0
NE2 k:HIS241 3.8 340.9 1.0
CG k:HIS290 3.9 324.0 1.0
CD2 k:HIS241 4.0 340.9 1.0
CA k:HIS241 4.4 340.9 1.0
CG2 k:VAL287 4.8 307.8 1.0
CB k:HIS291 4.9 335.6 1.0
O k:VAL287 4.9 307.8 1.0

Copper binding site 5 out of 6 in 8e7s

Go back to Copper Binding Sites List in 8e7s
Copper binding site 5 out of 6 in the III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6 within 5.0Å range:
probe atom residue distance (Å) B Occ
p:Cu301

b:365.9
occ:1.00
CE1 p:HIS229 1.1 325.7 1.0
ND1 p:HIS229 2.0 325.7 1.0
NE2 p:HIS229 2.2 325.7 1.0
SD p:MET232 2.3 306.7 1.0
CU2 p:CUA302 2.7 331.0 1.0
SG p:CYS225 2.7 318.2 1.0
CG p:HIS229 3.1 325.7 1.0
CD2 p:HIS229 3.2 325.7 1.0
CB p:CYS221 3.4 303.8 1.0
CE p:MET232 3.6 306.7 1.0
SG p:CYS221 3.6 303.8 1.0
CG p:MET232 3.9 306.7 1.0
O p:GLU223 3.9 321.2 1.0
CB p:CYS225 3.9 318.2 1.0
ND1 p:HIS186 4.1 280.9 1.0
O p:CYS221 4.1 303.8 1.0
CB p:MET232 4.2 306.7 1.0
CE1 p:HIS186 4.4 280.9 1.0
CB p:HIS229 4.4 325.7 1.0
CA p:CYS221 4.5 303.8 1.0
O p:HIS229 4.6 325.7 1.0
C p:CYS221 4.7 303.8 1.0
CA p:HIS229 4.7 325.7 1.0
N p:CYS225 4.8 318.2 1.0
N p:CYS221 4.9 303.8 1.0

Copper binding site 6 out of 6 in 8e7s

Go back to Copper Binding Sites List in 8e7s
Copper binding site 6 out of 6 in the III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of III2IV2 Respiratory Supercomplex From Saccharomyces Cerevisiae with 4 Bound UQ6 within 5.0Å range:
probe atom residue distance (Å) B Occ
p:Cu302

b:331.0
occ:1.00
ND1 p:HIS186 2.0 280.9 1.0
SG p:CYS225 2.1 318.2 1.0
SG p:CYS221 2.1 303.8 1.0
CU1 p:CUA301 2.7 365.9 1.0
CG p:HIS186 2.9 280.9 1.0
CE1 p:HIS186 3.0 280.9 1.0
CE1 p:HIS229 3.0 325.7 1.0
CB p:CYS221 3.2 303.8 1.0
CB p:HIS186 3.3 280.9 1.0
O p:GLU223 3.4 321.2 1.0
CA p:HIS186 3.5 280.9 1.0
NE2 p:HIS229 3.7 325.7 1.0
CB p:CYS225 3.9 318.2 1.0
ND1 p:HIS229 4.0 325.7 1.0
N p:ASP187 4.0 279.5 1.0
NE2 p:HIS186 4.0 280.9 1.0
CD2 p:HIS186 4.0 280.9 1.0
C p:HIS186 4.3 280.9 1.0
C p:GLU223 4.5 321.2 1.0
CA p:CYS221 4.5 303.8 1.0
O p:ILE185 4.6 272.8 1.0
O p:CYS221 4.7 303.8 1.0
N p:HIS186 4.7 280.9 1.0
SD p:MET232 4.8 306.7 1.0
CA p:CYS225 4.8 318.2 1.0
C p:CYS221 4.8 303.8 1.0
CB p:GLU223 4.8 321.2 1.0
N p:CYS225 4.8 318.2 1.0
CD2 p:HIS229 4.9 325.7 1.0
N p:GLU223 5.0 321.2 1.0
CZ2 p:TRP126 5.0 275.3 1.0
C p:LEU224 5.0 324.4 1.0

Reference:

C.F.Hryc, V.K.P.S.Mallampalli, E.I.Bovshik, S.Azinas, G.Fan, I.I.Serysheva, G.C.Sparagna, M.L.Baker, E.Mileykovskaya, W.Dowhan. Structural Insights Into Cardiolipin Replacement By Phosphatidylglycerol in A Cardiolipin-Lacking Yeast Respiratory Supercomplex. Nat Commun V. 14 2783 2023.
ISSN: ESSN 2041-1723
PubMed: 37188665
DOI: 10.1038/S41467-023-38441-5
Page generated: Wed Jul 31 09:39:59 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy