Copper in PDB 8dg1: Crystal Structure of Ecdsba in A Complex with Dmso

Protein crystallography data

The structure of Crystal Structure of Ecdsba in A Complex with Dmso, PDB code: 8dg1 was solved by R.L.Whitehouse, O.V.Ilyichova, A.J.Taylor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.86 / 1.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 117.214, 63.205, 74.848, 90, 125.25, 90
R / Rfree (%) 19 / 22.1

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Ecdsba in A Complex with Dmso (pdb code 8dg1). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of Ecdsba in A Complex with Dmso, PDB code: 8dg1:

Copper binding site 1 out of 1 in 8dg1

Go back to Copper Binding Sites List in 8dg1
Copper binding site 1 out of 1 in the Crystal Structure of Ecdsba in A Complex with Dmso


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Ecdsba in A Complex with Dmso within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:68.4
occ:1.00
O B:ALA1 2.1 57.1 1.0
N B:ALA1 2.3 51.2 1.0
OE2 B:GLU4 2.3 52.1 1.0
C B:ALA1 2.8 50.9 1.0
CA B:ALA1 3.0 51.3 1.0
CD B:GLU4 3.2 61.8 1.0
CG B:GLU4 3.3 48.9 1.0
CB B:ALA1 3.7 53.4 1.0
O B:HOH321 4.0 46.4 1.0
N B:GLN2 4.1 49.1 1.0
O B:HOH325 4.2 45.4 1.0
OE1 B:GLU4 4.4 62.6 1.0
CA B:GLN2 4.8 43.6 1.0
C B:GLN2 4.8 42.7 1.0
O B:GLN2 4.8 42.5 1.0
CB B:GLU4 4.9 48.0 1.0
C1 B:DMS207 4.9 67.5 1.0

Reference:

R.L.Whitehouse, W.S.Alwan, O.V.Ilyichova, A.J.Taylor, I.R.Chandrashekaran, B.Mohanty, B.C.Doak, M.J.Scanlon. Fragment Screening Libraries For the Identification of Protein Hot Spots and Their Minimal Binding Pharmacophores Rsc Med Chem 2022.
ISSN: ESSN 2632-8682
DOI: 10.1039/D2MD00253A
Page generated: Tue Apr 4 23:33:52 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy