Copper in PDB 8can: Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
Other elements in 8can:
The structure of Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva also contains other interesting chemical elements:
Copper Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Copper atom in the Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
(pdb code 8can). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 24 binding sites of Copper where determined in the
Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva, PDB code: 8can:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Copper binding site 1 out
of 24 in 8can
Go back to
Copper Binding Sites List in 8can
Copper binding site 1 out
of 24 in the Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu802
b:41.7
occ:1.00
|
NE2
|
A:HIS390
|
2.0
|
19.6
|
1.0
|
ND1
|
A:HIS360
|
2.0
|
9.9
|
1.0
|
HB3
|
A:HIS360
|
2.9
|
9.9
|
1.0
|
CE1
|
A:HIS360
|
2.9
|
9.9
|
1.0
|
CD2
|
A:HIS390
|
3.0
|
19.6
|
1.0
|
CE1
|
A:HIS390
|
3.0
|
19.6
|
1.0
|
CG
|
A:HIS360
|
3.1
|
9.9
|
1.0
|
HE1
|
A:HIS360
|
3.1
|
9.9
|
1.0
|
HD2
|
A:HIS390
|
3.2
|
19.6
|
1.0
|
O
|
A:HOH1364
|
3.2
|
13.2
|
1.0
|
HE1
|
A:HIS390
|
3.2
|
19.6
|
1.0
|
CB
|
A:HIS360
|
3.5
|
9.9
|
1.0
|
O
|
A:HOH1029
|
3.5
|
18.0
|
1.0
|
O
|
A:LYS393
|
3.6
|
12.7
|
1.0
|
O
|
A:HOH1040
|
3.8
|
12.8
|
1.0
|
HE3
|
C:MET451
|
3.9
|
8.7
|
1.0
|
C
|
A:HIS360
|
4.0
|
9.9
|
1.0
|
HA
|
A:ASP361
|
4.0
|
13.7
|
1.0
|
O
|
A:HIS360
|
4.0
|
9.9
|
1.0
|
NE2
|
A:HIS360
|
4.0
|
9.9
|
1.0
|
CD2
|
A:HIS360
|
4.1
|
9.9
|
1.0
|
ND1
|
A:HIS390
|
4.1
|
19.6
|
1.0
|
HA
|
A:SER394
|
4.2
|
11.4
|
1.0
|
CG
|
A:HIS390
|
4.2
|
19.6
|
1.0
|
HB2
|
A:HIS360
|
4.2
|
9.9
|
1.0
|
N
|
A:ASP361
|
4.2
|
13.7
|
1.0
|
CA
|
A:HIS360
|
4.4
|
9.9
|
1.0
|
HE1
|
C:MET451
|
4.4
|
8.7
|
1.0
|
O
|
A:LYS391
|
4.5
|
22.1
|
1.0
|
H
|
A:ASP361
|
4.5
|
13.7
|
1.0
|
CA
|
A:ASP361
|
4.6
|
13.7
|
1.0
|
CE
|
C:MET451
|
4.6
|
8.7
|
1.0
|
HB3
|
A:ASP361
|
4.6
|
13.7
|
1.0
|
O
|
C:HOH1250
|
4.7
|
13.7
|
1.0
|
C
|
A:LYS393
|
4.8
|
12.7
|
1.0
|
O
|
A:HOH1328
|
4.8
|
13.2
|
1.0
|
HE2
|
A:HIS360
|
4.8
|
9.9
|
1.0
|
HD1
|
A:HIS390
|
4.9
|
19.6
|
1.0
|
HA
|
A:HIS360
|
4.9
|
9.9
|
1.0
|
HD2
|
A:HIS360
|
5.0
|
9.9
|
1.0
|
HE2
|
C:MET451
|
5.0
|
8.7
|
1.0
|
|
Copper binding site 2 out
of 24 in 8can
Go back to
Copper Binding Sites List in 8can
Copper binding site 2 out
of 24 in the Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu803
b:36.5
occ:1.00
|
ND1
|
A:HIS500
|
2.1
|
19.8
|
1.0
|
NE2
|
A:HIS54
|
2.1
|
9.3
|
1.0
|
O
|
A:HOH977
|
2.9
|
18.9
|
1.0
|
HA
|
A:HIS500
|
2.9
|
19.8
|
1.0
|
CD2
|
A:HIS54
|
2.9
|
9.3
|
1.0
|
HD2
|
A:HIS54
|
3.0
|
9.3
|
1.0
|
HB3
|
A:HIS500
|
3.0
|
19.8
|
1.0
|
CG
|
A:HIS500
|
3.1
|
19.8
|
1.0
|
CE1
|
A:HIS500
|
3.1
|
19.8
|
1.0
|
CE1
|
A:HIS54
|
3.2
|
9.3
|
1.0
|
HE1
|
A:HIS500
|
3.3
|
19.8
|
1.0
|
CB
|
A:HIS500
|
3.3
|
19.8
|
1.0
|
HE1
|
A:HIS54
|
3.5
|
9.3
|
1.0
|
CA
|
A:HIS500
|
3.6
|
19.8
|
1.0
|
OD1
|
A:ASN53
|
4.1
|
10.5
|
1.0
|
CG
|
A:HIS54
|
4.1
|
9.3
|
1.0
|
NE2
|
A:HIS500
|
4.2
|
19.8
|
1.0
|
CD2
|
A:HIS500
|
4.2
|
19.8
|
1.0
|
O
|
A:MET497
|
4.2
|
16.2
|
1.0
|
ND1
|
A:HIS54
|
4.2
|
9.3
|
1.0
|
HB2
|
A:HIS500
|
4.3
|
19.8
|
1.0
|
H
|
A:HIS500
|
4.5
|
19.8
|
1.0
|
C
|
A:HIS500
|
4.6
|
19.8
|
1.0
|
N
|
A:HIS500
|
4.6
|
19.8
|
1.0
|
O
|
A:THR59
|
4.7
|
16.6
|
1.0
|
HB3
|
A:ASN53
|
4.7
|
10.5
|
1.0
|
HA
|
A:MET497
|
4.8
|
16.2
|
1.0
|
O
|
A:HIS500
|
4.8
|
19.8
|
1.0
|
HH21
|
A:ARG139
|
4.9
|
10.7
|
1.0
|
HE1
|
A:MET497
|
4.9
|
16.2
|
1.0
|
HE2
|
A:HIS500
|
5.0
|
19.8
|
1.0
|
|
Copper binding site 3 out
of 24 in 8can
Go back to
Copper Binding Sites List in 8can
Copper binding site 3 out
of 24 in the Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu804
b:33.6
occ:1.00
|
NE2
|
A:HIS515
|
2.1
|
8.5
|
1.0
|
ND1
|
A:HIS620
|
2.1
|
8.8
|
1.0
|
HB3
|
A:HIS620
|
2.7
|
8.8
|
1.0
|
CE1
|
A:HIS515
|
2.8
|
8.5
|
1.0
|
HD22
|
A:LEU623
|
2.8
|
7.6
|
1.0
|
HE1
|
A:HIS515
|
2.9
|
8.5
|
1.0
|
CG
|
A:HIS620
|
2.9
|
8.8
|
1.0
|
CE1
|
A:HIS620
|
3.1
|
8.8
|
1.0
|
HA
|
A:HIS620
|
3.2
|
8.8
|
1.0
|
CB
|
A:HIS620
|
3.2
|
8.8
|
1.0
|
HD23
|
A:LEU623
|
3.2
|
7.6
|
1.0
|
CD2
|
A:HIS515
|
3.2
|
8.5
|
1.0
|
O
|
A:HOH1037
|
3.3
|
11.6
|
1.0
|
O
|
A:HIS620
|
3.3
|
8.8
|
1.0
|
HB2
|
A:LEU623
|
3.4
|
7.6
|
1.0
|
HE1
|
A:HIS620
|
3.4
|
8.8
|
1.0
|
CD2
|
A:LEU623
|
3.4
|
7.6
|
1.0
|
HD2
|
A:HIS515
|
3.5
|
8.5
|
1.0
|
CA
|
A:HIS620
|
3.5
|
8.8
|
1.0
|
HB3
|
A:LEU623
|
3.5
|
7.6
|
1.0
|
C
|
A:HIS620
|
3.7
|
8.8
|
1.0
|
HG11
|
A:VAL585
|
3.8
|
8.9
|
1.0
|
CB
|
A:LEU623
|
3.9
|
7.6
|
1.0
|
HB2
|
A:SER579
|
3.9
|
13.1
|
1.0
|
O
|
A:HOH1118
|
3.9
|
11.0
|
1.0
|
ND1
|
A:HIS515
|
4.0
|
8.5
|
1.0
|
HB2
|
A:HIS620
|
4.1
|
8.8
|
1.0
|
CD2
|
A:HIS620
|
4.1
|
8.8
|
1.0
|
NE2
|
A:HIS620
|
4.2
|
8.8
|
1.0
|
HD21
|
A:LEU623
|
4.2
|
7.6
|
1.0
|
CG
|
A:HIS515
|
4.2
|
8.5
|
1.0
|
HZ3
|
A:LYS587
|
4.2
|
10.3
|
1.0
|
CG
|
A:LEU623
|
4.3
|
7.6
|
1.0
|
HG12
|
A:VAL585
|
4.4
|
8.9
|
1.0
|
O
|
A:HOH955
|
4.4
|
10.9
|
1.0
|
CG1
|
A:VAL585
|
4.5
|
8.9
|
1.0
|
HZ2
|
A:LYS587
|
4.7
|
10.3
|
1.0
|
H
|
A:LEU623
|
4.7
|
7.6
|
1.0
|
HG
|
A:SER579
|
4.7
|
13.1
|
1.0
|
HD1
|
A:HIS515
|
4.7
|
8.5
|
1.0
|
CB
|
A:SER579
|
4.8
|
13.1
|
1.0
|
O
|
A:SER579
|
4.8
|
13.1
|
1.0
|
NZ
|
A:LYS587
|
4.9
|
10.3
|
1.0
|
HE1
|
A:PHE518
|
4.9
|
10.5
|
1.0
|
N
|
A:ARG621
|
4.9
|
7.4
|
1.0
|
HD13
|
A:LEU623
|
4.9
|
7.6
|
1.0
|
N
|
A:HIS620
|
4.9
|
8.8
|
1.0
|
OG
|
A:SER579
|
4.9
|
13.1
|
1.0
|
HD2
|
A:HIS620
|
4.9
|
8.8
|
1.0
|
HG
|
A:LEU623
|
5.0
|
7.6
|
1.0
|
HG13
|
A:VAL585
|
5.0
|
8.9
|
1.0
|
HE2
|
A:HIS620
|
5.0
|
8.8
|
1.0
|
|
Copper binding site 4 out
of 24 in 8can
Go back to
Copper Binding Sites List in 8can
Copper binding site 4 out
of 24 in the Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu805
b:41.7
occ:1.00
|
ND1
|
A:HIS290
|
2.2
|
7.0
|
1.0
|
NE2
|
D:HIS291
|
2.2
|
7.5
|
1.0
|
O
|
A:HOH1362
|
2.6
|
11.3
|
1.0
|
HB3
|
A:HIS290
|
3.0
|
7.0
|
1.0
|
CE1
|
D:HIS291
|
3.1
|
7.5
|
1.0
|
CE1
|
A:HIS290
|
3.1
|
7.0
|
1.0
|
CD2
|
D:HIS291
|
3.1
|
7.5
|
1.0
|
CG
|
A:HIS290
|
3.2
|
7.0
|
1.0
|
HD2
|
A:ARG231
|
3.2
|
6.7
|
1.0
|
HE1
|
A:HIS290
|
3.2
|
7.0
|
1.0
|
HE1
|
D:HIS291
|
3.3
|
7.5
|
1.0
|
HD2
|
D:HIS291
|
3.3
|
7.5
|
1.0
|
CB
|
A:HIS290
|
3.5
|
7.0
|
1.0
|
HA
|
A:HIS290
|
3.7
|
7.0
|
1.0
|
HB3
|
A:ARG231
|
3.7
|
6.7
|
1.0
|
ND1
|
D:HIS291
|
4.1
|
7.5
|
1.0
|
CG
|
D:HIS291
|
4.1
|
7.5
|
1.0
|
CD
|
A:ARG231
|
4.1
|
6.7
|
1.0
|
CA
|
A:HIS290
|
4.2
|
7.0
|
1.0
|
NE2
|
A:HIS290
|
4.2
|
7.0
|
1.0
|
CD2
|
A:HIS290
|
4.3
|
7.0
|
1.0
|
HB2
|
A:HIS290
|
4.4
|
7.0
|
1.0
|
HH11
|
A:ARG231
|
4.4
|
6.7
|
1.0
|
O
|
A:HIS290
|
4.5
|
7.0
|
1.0
|
CB
|
A:ARG231
|
4.6
|
6.7
|
1.0
|
HD3
|
A:ARG231
|
4.7
|
6.7
|
1.0
|
NE
|
A:ARG231
|
4.7
|
6.7
|
1.0
|
NH1
|
A:ARG231
|
4.8
|
6.7
|
1.0
|
OH
|
A:TYR727
|
4.8
|
11.7
|
1.0
|
HD1
|
D:HIS291
|
4.8
|
7.5
|
1.0
|
C
|
A:HIS290
|
4.8
|
7.0
|
1.0
|
CG
|
A:ARG231
|
4.9
|
6.7
|
1.0
|
HB2
|
A:ARG231
|
4.9
|
6.7
|
1.0
|
CZ
|
A:ARG231
|
4.9
|
6.7
|
1.0
|
HE2
|
A:HIS290
|
5.0
|
7.0
|
1.0
|
HG2
|
A:ARG231
|
5.0
|
6.7
|
1.0
|
|
Copper binding site 5 out
of 24 in 8can
Go back to
Copper Binding Sites List in 8can
Copper binding site 5 out
of 24 in the Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu802
b:38.8
occ:1.00
|
ND1
|
B:HIS360
|
2.0
|
9.9
|
1.0
|
NE2
|
B:HIS390
|
2.0
|
20.2
|
1.0
|
HB3
|
B:HIS360
|
2.9
|
9.9
|
1.0
|
CE1
|
B:HIS360
|
2.9
|
9.9
|
1.0
|
CD2
|
B:HIS390
|
3.0
|
20.2
|
1.0
|
CE1
|
B:HIS390
|
3.0
|
20.2
|
1.0
|
CG
|
B:HIS360
|
3.1
|
9.9
|
1.0
|
HE1
|
B:HIS360
|
3.1
|
9.9
|
1.0
|
HD2
|
B:HIS390
|
3.2
|
20.2
|
1.0
|
O
|
B:HOH1357
|
3.2
|
14.2
|
1.0
|
HE1
|
B:HIS390
|
3.2
|
20.2
|
1.0
|
O
|
B:HOH1074
|
3.4
|
15.8
|
1.0
|
CB
|
B:HIS360
|
3.5
|
9.9
|
1.0
|
O
|
B:LYS393
|
3.6
|
13.1
|
1.0
|
HE3
|
A:MET451
|
3.9
|
8.8
|
1.0
|
C
|
B:HIS360
|
4.0
|
9.9
|
1.0
|
HA
|
B:ASP361
|
4.0
|
13.9
|
1.0
|
O
|
B:HIS360
|
4.0
|
9.9
|
1.0
|
NE2
|
B:HIS360
|
4.0
|
9.9
|
1.0
|
CD2
|
B:HIS360
|
4.1
|
9.9
|
1.0
|
ND1
|
B:HIS390
|
4.1
|
20.2
|
1.0
|
HA
|
B:SER394
|
4.2
|
11.4
|
1.0
|
CG
|
B:HIS390
|
4.2
|
20.2
|
1.0
|
HB2
|
B:HIS360
|
4.2
|
9.9
|
1.0
|
N
|
B:ASP361
|
4.2
|
13.9
|
1.0
|
CA
|
B:HIS360
|
4.4
|
9.9
|
1.0
|
HE1
|
A:MET451
|
4.4
|
8.8
|
1.0
|
O
|
B:LYS391
|
4.5
|
22.1
|
1.0
|
H
|
B:ASP361
|
4.5
|
13.9
|
1.0
|
CA
|
B:ASP361
|
4.6
|
13.9
|
1.0
|
CE
|
A:MET451
|
4.6
|
8.8
|
1.0
|
HB3
|
B:ASP361
|
4.6
|
13.9
|
1.0
|
C
|
B:LYS393
|
4.8
|
13.1
|
1.0
|
HE2
|
B:HIS360
|
4.8
|
9.9
|
1.0
|
O
|
B:HOH1324
|
4.9
|
14.1
|
1.0
|
HD1
|
B:HIS390
|
4.9
|
20.2
|
1.0
|
HA
|
B:HIS360
|
4.9
|
9.9
|
1.0
|
HD2
|
B:HIS360
|
5.0
|
9.9
|
1.0
|
HE2
|
A:MET451
|
5.0
|
8.8
|
1.0
|
|
Copper binding site 6 out
of 24 in 8can
Go back to
Copper Binding Sites List in 8can
Copper binding site 6 out
of 24 in the Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu803
b:38.0
occ:1.00
|
ND1
|
B:HIS500
|
2.1
|
19.7
|
1.0
|
NE2
|
B:HIS54
|
2.1
|
9.9
|
1.0
|
O
|
B:HOH1100
|
2.8
|
16.6
|
1.0
|
HA
|
B:HIS500
|
2.9
|
19.7
|
1.0
|
CD2
|
B:HIS54
|
2.9
|
9.9
|
1.0
|
HD2
|
B:HIS54
|
3.0
|
9.9
|
1.0
|
HB3
|
B:HIS500
|
3.0
|
19.7
|
1.0
|
CG
|
B:HIS500
|
3.1
|
19.7
|
1.0
|
CE1
|
B:HIS500
|
3.1
|
19.7
|
1.0
|
CE1
|
B:HIS54
|
3.2
|
9.9
|
1.0
|
HE1
|
B:HIS500
|
3.3
|
19.7
|
1.0
|
CB
|
B:HIS500
|
3.3
|
19.7
|
1.0
|
HE1
|
B:HIS54
|
3.5
|
9.9
|
1.0
|
CA
|
B:HIS500
|
3.6
|
19.7
|
1.0
|
O
|
B:HOH1330
|
3.7
|
12.4
|
1.0
|
OD1
|
B:ASN53
|
4.1
|
10.6
|
1.0
|
CG
|
B:HIS54
|
4.1
|
9.9
|
1.0
|
NE2
|
B:HIS500
|
4.2
|
19.7
|
1.0
|
CD2
|
B:HIS500
|
4.2
|
19.7
|
1.0
|
O
|
B:MET497
|
4.2
|
15.9
|
1.0
|
ND1
|
B:HIS54
|
4.2
|
9.9
|
1.0
|
HB2
|
B:HIS500
|
4.3
|
19.7
|
1.0
|
H
|
B:HIS500
|
4.5
|
19.7
|
1.0
|
C
|
B:HIS500
|
4.6
|
19.7
|
1.0
|
N
|
B:HIS500
|
4.6
|
19.7
|
1.0
|
O
|
B:THR59
|
4.7
|
16.1
|
1.0
|
HB3
|
B:ASN53
|
4.7
|
10.6
|
1.0
|
HA
|
B:MET497
|
4.8
|
15.9
|
1.0
|
O
|
B:HIS500
|
4.8
|
19.7
|
1.0
|
HH21
|
B:ARG139
|
4.9
|
10.7
|
1.0
|
HE1
|
B:MET497
|
4.9
|
15.9
|
1.0
|
HE2
|
B:HIS500
|
5.0
|
19.7
|
1.0
|
|
Copper binding site 7 out
of 24 in 8can
Go back to
Copper Binding Sites List in 8can
Copper binding site 7 out
of 24 in the Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 7 of Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu804
b:31.6
occ:1.00
|
NE2
|
B:HIS515
|
2.1
|
8.2
|
1.0
|
ND1
|
B:HIS620
|
2.1
|
8.8
|
1.0
|
HB3
|
B:HIS620
|
2.7
|
8.8
|
1.0
|
CE1
|
B:HIS515
|
2.8
|
8.2
|
1.0
|
HD22
|
B:LEU623
|
2.8
|
7.5
|
1.0
|
HE1
|
B:HIS515
|
2.9
|
8.2
|
1.0
|
CG
|
B:HIS620
|
2.9
|
8.8
|
1.0
|
CE1
|
B:HIS620
|
3.1
|
8.8
|
1.0
|
O
|
B:HOH998
|
3.1
|
10.6
|
1.0
|
HA
|
B:HIS620
|
3.2
|
8.8
|
1.0
|
CB
|
B:HIS620
|
3.2
|
8.8
|
1.0
|
HD23
|
B:LEU623
|
3.2
|
7.5
|
1.0
|
CD2
|
B:HIS515
|
3.2
|
8.2
|
1.0
|
O
|
B:HIS620
|
3.3
|
8.8
|
1.0
|
HB2
|
B:LEU623
|
3.4
|
7.5
|
1.0
|
HE1
|
B:HIS620
|
3.4
|
8.8
|
1.0
|
CD2
|
B:LEU623
|
3.4
|
7.5
|
1.0
|
HD2
|
B:HIS515
|
3.5
|
8.2
|
1.0
|
CA
|
B:HIS620
|
3.5
|
8.8
|
1.0
|
HB3
|
B:LEU623
|
3.5
|
7.5
|
1.0
|
C
|
B:HIS620
|
3.7
|
8.8
|
1.0
|
HG11
|
B:VAL585
|
3.8
|
8.5
|
1.0
|
O
|
B:HOH1088
|
3.8
|
11.4
|
1.0
|
CB
|
B:LEU623
|
3.9
|
7.5
|
1.0
|
HB2
|
B:SER579
|
3.9
|
12.5
|
1.0
|
ND1
|
B:HIS515
|
4.0
|
8.2
|
1.0
|
HB2
|
B:HIS620
|
4.1
|
8.8
|
1.0
|
CD2
|
B:HIS620
|
4.1
|
8.8
|
1.0
|
NE2
|
B:HIS620
|
4.2
|
8.8
|
1.0
|
HD21
|
B:LEU623
|
4.2
|
7.5
|
1.0
|
CG
|
B:HIS515
|
4.2
|
8.2
|
1.0
|
HZ3
|
B:LYS587
|
4.2
|
10.5
|
1.0
|
CG
|
B:LEU623
|
4.3
|
7.5
|
1.0
|
HG12
|
B:VAL585
|
4.4
|
8.5
|
1.0
|
CG1
|
B:VAL585
|
4.5
|
8.5
|
1.0
|
O
|
B:HOH917
|
4.7
|
9.8
|
1.0
|
HZ2
|
B:LYS587
|
4.7
|
10.5
|
1.0
|
H
|
B:LEU623
|
4.7
|
7.5
|
1.0
|
HG
|
B:SER579
|
4.7
|
12.5
|
1.0
|
HD1
|
B:HIS515
|
4.7
|
8.2
|
1.0
|
CB
|
B:SER579
|
4.8
|
12.5
|
1.0
|
O
|
B:SER579
|
4.8
|
12.5
|
1.0
|
NZ
|
B:LYS587
|
4.9
|
10.5
|
1.0
|
HE1
|
B:PHE518
|
4.9
|
9.7
|
1.0
|
N
|
B:ARG621
|
4.9
|
7.5
|
1.0
|
HD13
|
B:LEU623
|
4.9
|
7.5
|
1.0
|
N
|
B:HIS620
|
4.9
|
8.8
|
1.0
|
OG
|
B:SER579
|
4.9
|
12.5
|
1.0
|
HD2
|
B:HIS620
|
4.9
|
8.8
|
1.0
|
HG
|
B:LEU623
|
5.0
|
7.5
|
1.0
|
HG13
|
B:VAL585
|
5.0
|
8.5
|
1.0
|
HE2
|
B:HIS620
|
5.0
|
8.8
|
1.0
|
|
Copper binding site 8 out
of 24 in 8can
Go back to
Copper Binding Sites List in 8can
Copper binding site 8 out
of 24 in the Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 8 of Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu805
b:42.1
occ:1.00
|
ND1
|
B:HIS290
|
2.2
|
7.1
|
1.0
|
NE2
|
F:HIS291
|
2.2
|
7.0
|
1.0
|
HB3
|
B:HIS290
|
3.0
|
7.1
|
1.0
|
CE1
|
F:HIS291
|
3.1
|
7.0
|
1.0
|
CE1
|
B:HIS290
|
3.1
|
7.1
|
1.0
|
CD2
|
F:HIS291
|
3.1
|
7.0
|
1.0
|
CG
|
B:HIS290
|
3.2
|
7.1
|
1.0
|
HD2
|
B:ARG231
|
3.2
|
6.7
|
1.0
|
HE1
|
B:HIS290
|
3.2
|
7.1
|
1.0
|
HE1
|
F:HIS291
|
3.3
|
7.0
|
1.0
|
HD2
|
F:HIS291
|
3.3
|
7.0
|
1.0
|
CB
|
B:HIS290
|
3.5
|
7.1
|
1.0
|
O
|
B:HOH1192
|
3.7
|
10.9
|
1.0
|
HA
|
B:HIS290
|
3.7
|
7.1
|
1.0
|
HB3
|
B:ARG231
|
3.7
|
6.7
|
1.0
|
ND1
|
F:HIS291
|
4.1
|
7.0
|
1.0
|
CG
|
F:HIS291
|
4.1
|
7.0
|
1.0
|
CD
|
B:ARG231
|
4.1
|
6.7
|
1.0
|
CA
|
B:HIS290
|
4.2
|
7.1
|
1.0
|
NE2
|
B:HIS290
|
4.2
|
7.1
|
1.0
|
CD2
|
B:HIS290
|
4.3
|
7.1
|
1.0
|
HB2
|
B:HIS290
|
4.4
|
7.1
|
1.0
|
HH11
|
B:ARG231
|
4.4
|
6.7
|
1.0
|
O
|
B:HIS290
|
4.5
|
7.1
|
1.0
|
CB
|
B:ARG231
|
4.6
|
6.7
|
1.0
|
HD3
|
B:ARG231
|
4.7
|
6.7
|
1.0
|
NE
|
B:ARG231
|
4.7
|
6.7
|
1.0
|
NH1
|
B:ARG231
|
4.8
|
6.7
|
1.0
|
OH
|
B:TYR727
|
4.8
|
12.2
|
1.0
|
HD1
|
F:HIS291
|
4.8
|
7.0
|
1.0
|
C
|
B:HIS290
|
4.8
|
7.1
|
1.0
|
CG
|
B:ARG231
|
4.9
|
6.7
|
1.0
|
HB2
|
B:ARG231
|
4.9
|
6.7
|
1.0
|
CZ
|
B:ARG231
|
4.9
|
6.7
|
1.0
|
HE2
|
B:HIS290
|
5.0
|
7.1
|
1.0
|
HG2
|
B:ARG231
|
5.0
|
6.7
|
1.0
|
|
Copper binding site 9 out
of 24 in 8can
Go back to
Copper Binding Sites List in 8can
Copper binding site 9 out
of 24 in the Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 9 of Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu802
b:39.3
occ:1.00
|
NE2
|
C:HIS390
|
2.0
|
19.6
|
1.0
|
ND1
|
C:HIS360
|
2.0
|
9.5
|
1.0
|
HB3
|
C:HIS360
|
2.9
|
9.5
|
1.0
|
CE1
|
C:HIS360
|
2.9
|
9.5
|
1.0
|
CD2
|
C:HIS390
|
3.0
|
19.6
|
1.0
|
CE1
|
C:HIS390
|
3.0
|
19.6
|
1.0
|
CG
|
C:HIS360
|
3.1
|
9.5
|
1.0
|
HE1
|
C:HIS360
|
3.1
|
9.5
|
1.0
|
HD2
|
C:HIS390
|
3.2
|
19.6
|
1.0
|
HE1
|
C:HIS390
|
3.2
|
19.6
|
1.0
|
CB
|
C:HIS360
|
3.5
|
9.5
|
1.0
|
O
|
C:LYS393
|
3.6
|
12.6
|
1.0
|
O
|
B:HOH1030
|
3.6
|
18.2
|
1.0
|
O
|
C:HOH1379
|
3.7
|
14.5
|
1.0
|
O
|
C:HOH942
|
3.9
|
14.4
|
1.0
|
HE3
|
B:MET451
|
3.9
|
8.4
|
1.0
|
C
|
C:HIS360
|
4.0
|
9.5
|
1.0
|
HA
|
C:ASP361
|
4.0
|
13.9
|
1.0
|
O
|
C:HIS360
|
4.0
|
9.5
|
1.0
|
NE2
|
C:HIS360
|
4.0
|
9.5
|
1.0
|
CD2
|
C:HIS360
|
4.1
|
9.5
|
1.0
|
ND1
|
C:HIS390
|
4.1
|
19.6
|
1.0
|
HA
|
C:SER394
|
4.2
|
10.8
|
1.0
|
CG
|
C:HIS390
|
4.2
|
19.6
|
1.0
|
HB2
|
C:HIS360
|
4.2
|
9.5
|
1.0
|
N
|
C:ASP361
|
4.2
|
13.9
|
1.0
|
CA
|
C:HIS360
|
4.4
|
9.5
|
1.0
|
HE1
|
B:MET451
|
4.4
|
8.4
|
1.0
|
O
|
C:LYS391
|
4.5
|
21.1
|
1.0
|
O
|
B:HOH1244
|
4.5
|
14.6
|
1.0
|
H
|
C:ASP361
|
4.5
|
13.9
|
1.0
|
CA
|
C:ASP361
|
4.6
|
13.9
|
1.0
|
CE
|
B:MET451
|
4.6
|
8.4
|
1.0
|
HB3
|
C:ASP361
|
4.6
|
13.9
|
1.0
|
C
|
C:LYS393
|
4.8
|
12.6
|
1.0
|
O
|
C:HOH1335
|
4.8
|
12.3
|
1.0
|
HE2
|
C:HIS360
|
4.8
|
9.5
|
1.0
|
HD1
|
C:HIS390
|
4.9
|
19.6
|
1.0
|
HA
|
C:HIS360
|
4.9
|
9.5
|
1.0
|
HE2
|
B:MET451
|
5.0
|
8.4
|
1.0
|
HD2
|
C:HIS360
|
5.0
|
9.5
|
1.0
|
|
Copper binding site 10 out
of 24 in 8can
Go back to
Copper Binding Sites List in 8can
Copper binding site 10 out
of 24 in the Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 10 of Cryo-Em Structure of the Cora Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu803
b:37.5
occ:1.00
|
ND1
|
C:HIS500
|
2.1
|
20.8
|
1.0
|
NE2
|
C:HIS54
|
2.1
|
10.1
|
1.0
|
O
|
C:HOH1113
|
2.8
|
20.3
|
1.0
|
HA
|
C:HIS500
|
2.9
|
20.8
|
1.0
|
CD2
|
C:HIS54
|
2.9
|
10.1
|
1.0
|
HD2
|
C:HIS54
|
3.0
|
10.1
|
1.0
|
HB3
|
C:HIS500
|
3.0
|
20.8
|
1.0
|
CG
|
C:HIS500
|
3.1
|
20.8
|
1.0
|
CE1
|
C:HIS500
|
3.1
|
20.8
|
1.0
|
CE1
|
C:HIS54
|
3.2
|
10.1
|
1.0
|
HE1
|
C:HIS500
|
3.3
|
20.8
|
1.0
|
CB
|
C:HIS500
|
3.3
|
20.8
|
1.0
|
HE1
|
C:HIS54
|
3.5
|
10.1
|
1.0
|
CA
|
C:HIS500
|
3.6
|
20.8
|
1.0
|
OD1
|
C:ASN53
|
4.1
|
10.9
|
1.0
|
CG
|
C:HIS54
|
4.1
|
10.1
|
1.0
|
NE2
|
C:HIS500
|
4.2
|
20.8
|
1.0
|
CD2
|
C:HIS500
|
4.2
|
20.8
|
1.0
|
O
|
C:MET497
|
4.2
|
16.4
|
1.0
|
ND1
|
C:HIS54
|
4.2
|
10.1
|
1.0
|
HB2
|
C:HIS500
|
4.3
|
20.8
|
1.0
|
H
|
C:HIS500
|
4.5
|
20.8
|
1.0
|
C
|
C:HIS500
|
4.6
|
20.8
|
1.0
|
N
|
C:HIS500
|
4.6
|
20.8
|
1.0
|
O
|
C:THR59
|
4.7
|
17.0
|
1.0
|
HB3
|
C:ASN53
|
4.7
|
10.9
|
1.0
|
HA
|
C:MET497
|
4.8
|
16.4
|
1.0
|
O
|
C:HIS500
|
4.8
|
20.8
|
1.0
|
HH21
|
C:ARG139
|
4.9
|
11.3
|
1.0
|
HE1
|
C:MET497
|
4.9
|
16.4
|
1.0
|
O
|
C:HOH988
|
5.0
|
18.4
|
1.0
|
HE2
|
C:HIS500
|
5.0
|
20.8
|
1.0
|
|
Reference:
M.Spinola-Amilibia,
R.Illanes-Vicioso,
E.Ruiz-L Formula See Text Pez,
P.Colomer-Vidal,
F.V.Rodriguez,
R.Peces Perez,
C.F.Arias,
T.Torroba,
M.Sol Formula See Text,
E.Arias-Palomo,
F.Bertocchini.
Plastic Degradation By Insect Hexamerins: Near-Atomic Resolution Structures of the Polyethylene-Degrading Proteins From the Wax Worm Saliva. Sci Adv V. 9 I6813 2023.
ISSN: ESSN 2375-2548
PubMed: 37729416
DOI: 10.1126/SCIADV.ADI6813
Page generated: Wed Jul 31 09:34:29 2024
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