Copper in PDB 8cad: Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
Copper Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Copper atom in the Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
(pdb code 8cad). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 12 binding sites of Copper where determined in the
Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva, PDB code: 8cad:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Copper binding site 1 out
of 12 in 8cad
Go back to
Copper Binding Sites List in 8cad
Copper binding site 1 out
of 12 in the Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu900
b:45.0
occ:1.00
|
HE1
|
A:HIS47
|
2.7
|
42.9
|
1.0
|
ND1
|
A:HIS481
|
2.8
|
42.3
|
1.0
|
HB3
|
A:SER167
|
2.8
|
27.6
|
1.0
|
H
|
A:SER167
|
2.9
|
27.6
|
1.0
|
HG
|
A:SER167
|
3.0
|
27.6
|
1.0
|
OG
|
A:SER167
|
3.0
|
27.6
|
1.0
|
HD2
|
A:PRO166
|
3.1
|
30.8
|
1.0
|
HA
|
A:PHE165
|
3.2
|
31.1
|
1.0
|
CB
|
A:SER167
|
3.4
|
27.6
|
1.0
|
HD1
|
A:PHE165
|
3.4
|
31.1
|
1.0
|
CE1
|
A:HIS47
|
3.4
|
42.9
|
1.0
|
HB2
|
A:HIS481
|
3.5
|
42.3
|
1.0
|
CE1
|
A:HIS481
|
3.6
|
42.3
|
1.0
|
HE1
|
A:HIS481
|
3.6
|
42.3
|
1.0
|
N
|
A:SER167
|
3.6
|
27.6
|
1.0
|
CG
|
A:HIS481
|
3.8
|
42.3
|
1.0
|
ND1
|
A:HIS303
|
3.8
|
38.1
|
1.0
|
CD
|
A:PRO166
|
3.9
|
30.8
|
1.0
|
HA
|
A:HIS481
|
3.9
|
42.3
|
1.0
|
HE2
|
A:HIS47
|
4.0
|
42.9
|
1.0
|
CA
|
A:PHE165
|
4.0
|
31.1
|
1.0
|
HB3
|
A:PHE165
|
4.0
|
31.1
|
1.0
|
N
|
A:PRO166
|
4.0
|
30.8
|
1.0
|
CB
|
A:HIS481
|
4.0
|
42.3
|
1.0
|
NE2
|
A:HIS47
|
4.1
|
42.9
|
1.0
|
HB2
|
A:HIS303
|
4.1
|
38.1
|
1.0
|
CA
|
A:SER167
|
4.1
|
27.6
|
1.0
|
HB2
|
A:SER167
|
4.2
|
27.6
|
1.0
|
C
|
A:PHE165
|
4.2
|
31.1
|
1.0
|
HD3
|
A:PRO166
|
4.3
|
30.8
|
1.0
|
CD1
|
A:PHE165
|
4.3
|
31.1
|
1.0
|
HE2
|
A:MET175
|
4.4
|
35.7
|
1.0
|
ND1
|
A:HIS47
|
4.4
|
42.9
|
1.0
|
CB
|
A:PHE165
|
4.5
|
31.1
|
1.0
|
CA
|
A:HIS481
|
4.5
|
42.3
|
1.0
|
HE1
|
A:HIS303
|
4.5
|
38.1
|
1.0
|
CE1
|
A:HIS303
|
4.6
|
38.1
|
1.0
|
HA
|
A:SER167
|
4.7
|
27.6
|
1.0
|
CG
|
A:HIS303
|
4.7
|
38.1
|
1.0
|
C
|
A:PRO166
|
4.7
|
30.8
|
1.0
|
HA
|
A:HIS303
|
4.7
|
38.1
|
1.0
|
NE2
|
A:HIS481
|
4.8
|
42.3
|
1.0
|
CB
|
A:HIS303
|
4.8
|
38.1
|
1.0
|
O
|
A:VAL164
|
4.8
|
33.1
|
1.0
|
HB2
|
A:PRO166
|
4.9
|
30.8
|
1.0
|
CD2
|
A:HIS481
|
4.9
|
42.3
|
1.0
|
CA
|
A:PRO166
|
4.9
|
30.8
|
1.0
|
CG
|
A:PHE165
|
4.9
|
31.1
|
1.0
|
HB3
|
A:HIS481
|
4.9
|
42.3
|
1.0
|
O
|
A:PHE165
|
4.9
|
31.1
|
1.0
|
CG
|
A:PRO166
|
5.0
|
30.8
|
1.0
|
|
Copper binding site 2 out
of 12 in 8cad
Go back to
Copper Binding Sites List in 8cad
Copper binding site 2 out
of 12 in the Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu901
b:57.7
occ:1.00
|
HD1
|
A:HIS314
|
1.7
|
23.4
|
1.0
|
OE2
|
A:GLU291
|
2.2
|
22.1
|
1.0
|
ND1
|
A:HIS314
|
2.4
|
23.4
|
1.0
|
ND1
|
E:HIS319
|
2.8
|
25.5
|
1.0
|
HB3
|
A:HIS314
|
2.8
|
23.4
|
1.0
|
CD
|
A:GLU291
|
3.1
|
22.1
|
1.0
|
CG
|
A:HIS314
|
3.3
|
23.4
|
1.0
|
CE1
|
A:HIS314
|
3.3
|
23.4
|
1.0
|
OE1
|
A:GLU291
|
3.4
|
22.1
|
1.0
|
HB3
|
E:HIS319
|
3.4
|
25.5
|
1.0
|
CE1
|
E:HIS319
|
3.4
|
25.5
|
1.0
|
CB
|
A:HIS314
|
3.5
|
23.4
|
1.0
|
HE1
|
E:HIS319
|
3.5
|
25.5
|
1.0
|
HE1
|
A:HIS314
|
3.5
|
23.4
|
1.0
|
CG
|
E:HIS319
|
3.6
|
25.5
|
1.0
|
CB
|
E:HIS319
|
4.0
|
25.5
|
1.0
|
HB2
|
A:HIS314
|
4.2
|
23.4
|
1.0
|
HA
|
A:HIS314
|
4.2
|
23.4
|
1.0
|
O
|
A:HOH1045
|
4.3
|
19.6
|
1.0
|
HG2
|
A:GLU293
|
4.4
|
23.0
|
1.0
|
CD2
|
A:HIS314
|
4.4
|
23.4
|
1.0
|
NE2
|
A:HIS314
|
4.4
|
23.4
|
1.0
|
HB2
|
E:HIS319
|
4.4
|
25.5
|
1.0
|
NE2
|
E:HIS319
|
4.4
|
25.5
|
1.0
|
CA
|
A:HIS314
|
4.5
|
23.4
|
1.0
|
CG
|
A:GLU291
|
4.5
|
22.1
|
1.0
|
CD2
|
E:HIS319
|
4.5
|
25.5
|
1.0
|
H
|
E:GLN320
|
4.6
|
26.8
|
1.0
|
HG2
|
A:GLU291
|
4.6
|
22.1
|
1.0
|
O
|
D:HOH1045
|
4.8
|
17.9
|
1.0
|
HG3
|
A:GLU291
|
4.8
|
22.1
|
1.0
|
|
Copper binding site 3 out
of 12 in 8cad
Go back to
Copper Binding Sites List in 8cad
Copper binding site 3 out
of 12 in the Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu900
b:56.1
occ:1.00
|
HE1
|
B:HIS47
|
2.7
|
42.8
|
1.0
|
ND1
|
B:HIS481
|
2.8
|
42.0
|
1.0
|
HB3
|
B:SER167
|
2.8
|
28.6
|
1.0
|
H
|
B:SER167
|
2.9
|
28.6
|
1.0
|
HG
|
B:SER167
|
3.0
|
28.6
|
1.0
|
OG
|
B:SER167
|
3.0
|
28.6
|
1.0
|
HD2
|
B:PRO166
|
3.1
|
30.9
|
1.0
|
HA
|
B:PHE165
|
3.2
|
31.1
|
1.0
|
CB
|
B:SER167
|
3.4
|
28.6
|
1.0
|
HD1
|
B:PHE165
|
3.4
|
31.1
|
1.0
|
CE1
|
B:HIS47
|
3.4
|
42.8
|
1.0
|
HB2
|
B:HIS481
|
3.5
|
42.0
|
1.0
|
CE1
|
B:HIS481
|
3.6
|
42.0
|
1.0
|
HE1
|
B:HIS481
|
3.6
|
42.0
|
1.0
|
N
|
B:SER167
|
3.6
|
28.6
|
1.0
|
CG
|
B:HIS481
|
3.8
|
42.0
|
1.0
|
ND1
|
B:HIS303
|
3.8
|
38.3
|
1.0
|
CD
|
B:PRO166
|
3.9
|
30.9
|
1.0
|
HA
|
B:HIS481
|
3.9
|
42.0
|
1.0
|
HE2
|
B:HIS47
|
4.0
|
42.8
|
1.0
|
CA
|
B:PHE165
|
4.0
|
31.1
|
1.0
|
HB3
|
B:PHE165
|
4.0
|
31.1
|
1.0
|
N
|
B:PRO166
|
4.0
|
30.9
|
1.0
|
CB
|
B:HIS481
|
4.0
|
42.0
|
1.0
|
NE2
|
B:HIS47
|
4.1
|
42.8
|
1.0
|
HB2
|
B:HIS303
|
4.1
|
38.3
|
1.0
|
CA
|
B:SER167
|
4.1
|
28.6
|
1.0
|
HB2
|
B:SER167
|
4.2
|
28.6
|
1.0
|
C
|
B:PHE165
|
4.2
|
31.1
|
1.0
|
HD3
|
B:PRO166
|
4.3
|
30.9
|
1.0
|
CD1
|
B:PHE165
|
4.3
|
31.1
|
1.0
|
HE2
|
B:MET175
|
4.4
|
36.1
|
1.0
|
ND1
|
B:HIS47
|
4.4
|
42.8
|
1.0
|
CB
|
B:PHE165
|
4.5
|
31.1
|
1.0
|
CA
|
B:HIS481
|
4.5
|
42.0
|
1.0
|
HE1
|
B:HIS303
|
4.6
|
38.3
|
1.0
|
CE1
|
B:HIS303
|
4.6
|
38.3
|
1.0
|
HA
|
B:SER167
|
4.7
|
28.6
|
1.0
|
CG
|
B:HIS303
|
4.7
|
38.3
|
1.0
|
C
|
B:PRO166
|
4.7
|
30.9
|
1.0
|
HA
|
B:HIS303
|
4.7
|
38.3
|
1.0
|
NE2
|
B:HIS481
|
4.8
|
42.0
|
1.0
|
CB
|
B:HIS303
|
4.8
|
38.3
|
1.0
|
O
|
B:VAL164
|
4.8
|
33.2
|
1.0
|
HB2
|
B:PRO166
|
4.9
|
30.9
|
1.0
|
CD2
|
B:HIS481
|
4.9
|
42.0
|
1.0
|
CA
|
B:PRO166
|
4.9
|
30.9
|
1.0
|
CG
|
B:PHE165
|
4.9
|
31.1
|
1.0
|
HB3
|
B:HIS481
|
4.9
|
42.0
|
1.0
|
O
|
B:PHE165
|
4.9
|
31.1
|
1.0
|
CG
|
B:PRO166
|
5.0
|
30.9
|
1.0
|
|
Copper binding site 4 out
of 12 in 8cad
Go back to
Copper Binding Sites List in 8cad
Copper binding site 4 out
of 12 in the Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu901
b:62.2
occ:1.00
|
HD1
|
B:HIS314
|
1.7
|
23.1
|
1.0
|
OE2
|
B:GLU291
|
2.2
|
22.6
|
1.0
|
ND1
|
B:HIS314
|
2.4
|
23.1
|
1.0
|
ND1
|
D:HIS319
|
2.8
|
25.9
|
1.0
|
HB3
|
B:HIS314
|
2.8
|
23.1
|
1.0
|
CD
|
B:GLU291
|
3.1
|
22.6
|
1.0
|
CG
|
B:HIS314
|
3.3
|
23.1
|
1.0
|
CE1
|
B:HIS314
|
3.3
|
23.1
|
1.0
|
OE1
|
B:GLU291
|
3.4
|
22.6
|
1.0
|
HB3
|
D:HIS319
|
3.4
|
25.9
|
1.0
|
CE1
|
D:HIS319
|
3.4
|
25.9
|
1.0
|
CB
|
B:HIS314
|
3.5
|
23.1
|
1.0
|
HE1
|
B:HIS314
|
3.5
|
23.1
|
1.0
|
HE1
|
D:HIS319
|
3.5
|
25.9
|
1.0
|
CG
|
D:HIS319
|
3.6
|
25.9
|
1.0
|
CB
|
D:HIS319
|
4.0
|
25.9
|
1.0
|
HB2
|
B:HIS314
|
4.2
|
23.1
|
1.0
|
HA
|
B:HIS314
|
4.2
|
23.1
|
1.0
|
O
|
B:HOH1054
|
4.4
|
20.0
|
1.0
|
HG2
|
B:GLU293
|
4.4
|
23.4
|
1.0
|
CD2
|
B:HIS314
|
4.4
|
23.1
|
1.0
|
NE2
|
B:HIS314
|
4.4
|
23.1
|
1.0
|
HB2
|
D:HIS319
|
4.4
|
25.9
|
1.0
|
NE2
|
D:HIS319
|
4.4
|
25.9
|
1.0
|
CA
|
B:HIS314
|
4.5
|
23.1
|
1.0
|
CG
|
B:GLU291
|
4.5
|
22.6
|
1.0
|
CD2
|
D:HIS319
|
4.5
|
25.9
|
1.0
|
H
|
D:GLN320
|
4.6
|
27.8
|
1.0
|
HG2
|
B:GLU291
|
4.6
|
22.6
|
1.0
|
O
|
F:HOH1052
|
4.7
|
21.4
|
1.0
|
HG3
|
B:GLU291
|
4.8
|
22.6
|
1.0
|
|
Copper binding site 5 out
of 12 in 8cad
Go back to
Copper Binding Sites List in 8cad
Copper binding site 5 out
of 12 in the Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu900
b:50.6
occ:1.00
|
HE1
|
C:HIS47
|
2.7
|
42.2
|
1.0
|
ND1
|
C:HIS481
|
2.8
|
42.0
|
1.0
|
HB3
|
C:SER167
|
2.8
|
28.8
|
1.0
|
H
|
C:SER167
|
2.9
|
28.8
|
1.0
|
HG
|
C:SER167
|
3.0
|
28.8
|
1.0
|
OG
|
C:SER167
|
3.0
|
28.8
|
1.0
|
HD2
|
C:PRO166
|
3.1
|
31.2
|
1.0
|
HA
|
C:PHE165
|
3.2
|
31.1
|
1.0
|
CB
|
C:SER167
|
3.4
|
28.8
|
1.0
|
HD1
|
C:PHE165
|
3.4
|
31.1
|
1.0
|
CE1
|
C:HIS47
|
3.4
|
42.2
|
1.0
|
HB2
|
C:HIS481
|
3.5
|
42.0
|
1.0
|
CE1
|
C:HIS481
|
3.6
|
42.0
|
1.0
|
HE1
|
C:HIS481
|
3.6
|
42.0
|
1.0
|
N
|
C:SER167
|
3.6
|
28.8
|
1.0
|
CG
|
C:HIS481
|
3.8
|
42.0
|
1.0
|
ND1
|
C:HIS303
|
3.8
|
37.9
|
1.0
|
CD
|
C:PRO166
|
3.9
|
31.2
|
1.0
|
HA
|
C:HIS481
|
3.9
|
42.0
|
1.0
|
HE2
|
C:HIS47
|
4.0
|
42.2
|
1.0
|
CA
|
C:PHE165
|
4.0
|
31.1
|
1.0
|
HB3
|
C:PHE165
|
4.0
|
31.1
|
1.0
|
N
|
C:PRO166
|
4.0
|
31.2
|
1.0
|
CB
|
C:HIS481
|
4.0
|
42.0
|
1.0
|
NE2
|
C:HIS47
|
4.1
|
42.2
|
1.0
|
HB2
|
C:HIS303
|
4.1
|
37.9
|
1.0
|
CA
|
C:SER167
|
4.1
|
28.8
|
1.0
|
HB2
|
C:SER167
|
4.2
|
28.8
|
1.0
|
C
|
C:PHE165
|
4.2
|
31.1
|
1.0
|
HD3
|
C:PRO166
|
4.3
|
31.2
|
1.0
|
CD1
|
C:PHE165
|
4.3
|
31.1
|
1.0
|
O
|
C:HOH1061
|
4.3
|
30.8
|
1.0
|
HE2
|
C:MET175
|
4.4
|
36.3
|
1.0
|
ND1
|
C:HIS47
|
4.4
|
42.2
|
1.0
|
CB
|
C:PHE165
|
4.5
|
31.1
|
1.0
|
CA
|
C:HIS481
|
4.5
|
42.0
|
1.0
|
HE1
|
C:HIS303
|
4.5
|
37.9
|
1.0
|
CE1
|
C:HIS303
|
4.6
|
37.9
|
1.0
|
HA
|
C:SER167
|
4.7
|
28.8
|
1.0
|
CG
|
C:HIS303
|
4.7
|
37.9
|
1.0
|
C
|
C:PRO166
|
4.7
|
31.2
|
1.0
|
HA
|
C:HIS303
|
4.7
|
37.9
|
1.0
|
NE2
|
C:HIS481
|
4.8
|
42.0
|
1.0
|
CB
|
C:HIS303
|
4.8
|
37.9
|
1.0
|
O
|
C:VAL164
|
4.8
|
33.3
|
1.0
|
HB2
|
C:PRO166
|
4.9
|
31.2
|
1.0
|
CD2
|
C:HIS481
|
4.9
|
42.0
|
1.0
|
CA
|
C:PRO166
|
4.9
|
31.2
|
1.0
|
CG
|
C:PHE165
|
4.9
|
31.1
|
1.0
|
HB3
|
C:HIS481
|
4.9
|
42.0
|
1.0
|
O
|
C:PHE165
|
4.9
|
31.1
|
1.0
|
CG
|
C:PRO166
|
5.0
|
31.2
|
1.0
|
|
Copper binding site 6 out
of 12 in 8cad
Go back to
Copper Binding Sites List in 8cad
Copper binding site 6 out
of 12 in the Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu901
b:57.9
occ:1.00
|
HD1
|
C:HIS314
|
1.7
|
24.4
|
1.0
|
OE2
|
C:GLU291
|
2.2
|
23.5
|
1.0
|
ND1
|
C:HIS314
|
2.4
|
24.4
|
1.0
|
ND1
|
F:HIS319
|
2.8
|
26.3
|
1.0
|
HB3
|
C:HIS314
|
2.8
|
24.4
|
1.0
|
CD
|
C:GLU291
|
3.1
|
23.5
|
1.0
|
CG
|
C:HIS314
|
3.3
|
24.4
|
1.0
|
CE1
|
C:HIS314
|
3.3
|
24.4
|
1.0
|
OE1
|
C:GLU291
|
3.4
|
23.5
|
1.0
|
HB3
|
F:HIS319
|
3.4
|
26.3
|
1.0
|
CE1
|
F:HIS319
|
3.4
|
26.3
|
1.0
|
CB
|
C:HIS314
|
3.5
|
24.4
|
1.0
|
HE1
|
C:HIS314
|
3.5
|
24.4
|
1.0
|
HE1
|
F:HIS319
|
3.5
|
26.3
|
1.0
|
CG
|
F:HIS319
|
3.6
|
26.3
|
1.0
|
CB
|
F:HIS319
|
4.0
|
26.3
|
1.0
|
HB2
|
C:HIS314
|
4.2
|
24.4
|
1.0
|
HA
|
C:HIS314
|
4.2
|
24.4
|
1.0
|
O
|
C:HOH1053
|
4.3
|
20.8
|
1.0
|
HG2
|
C:GLU293
|
4.4
|
24.0
|
1.0
|
CD2
|
C:HIS314
|
4.4
|
24.4
|
1.0
|
NE2
|
C:HIS314
|
4.4
|
24.4
|
1.0
|
HB2
|
F:HIS319
|
4.4
|
26.3
|
1.0
|
NE2
|
F:HIS319
|
4.4
|
26.3
|
1.0
|
CA
|
C:HIS314
|
4.5
|
24.4
|
1.0
|
CG
|
C:GLU291
|
4.5
|
23.5
|
1.0
|
CD2
|
F:HIS319
|
4.5
|
26.3
|
1.0
|
H
|
F:GLN320
|
4.6
|
27.0
|
1.0
|
HG2
|
C:GLU291
|
4.6
|
23.5
|
1.0
|
O
|
E:HOH1053
|
4.7
|
19.9
|
1.0
|
HG3
|
C:GLU291
|
4.8
|
23.5
|
1.0
|
|
Copper binding site 7 out
of 12 in 8cad
Go back to
Copper Binding Sites List in 8cad
Copper binding site 7 out
of 12 in the Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 7 of Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu900
b:43.6
occ:1.00
|
HE1
|
D:HIS47
|
2.7
|
43.1
|
1.0
|
ND1
|
D:HIS481
|
2.8
|
42.6
|
1.0
|
HB3
|
D:SER167
|
2.8
|
27.7
|
1.0
|
H
|
D:SER167
|
2.9
|
27.7
|
1.0
|
HG
|
D:SER167
|
3.0
|
27.7
|
1.0
|
OG
|
D:SER167
|
3.0
|
27.7
|
1.0
|
HD2
|
D:PRO166
|
3.1
|
30.8
|
1.0
|
HA
|
D:PHE165
|
3.2
|
31.3
|
1.0
|
CB
|
D:SER167
|
3.4
|
27.7
|
1.0
|
HD1
|
D:PHE165
|
3.4
|
31.3
|
1.0
|
CE1
|
D:HIS47
|
3.4
|
43.1
|
1.0
|
HB2
|
D:HIS481
|
3.5
|
42.6
|
1.0
|
CE1
|
D:HIS481
|
3.6
|
42.6
|
1.0
|
HE1
|
D:HIS481
|
3.6
|
42.6
|
1.0
|
N
|
D:SER167
|
3.6
|
27.7
|
1.0
|
CG
|
D:HIS481
|
3.8
|
42.6
|
1.0
|
ND1
|
D:HIS303
|
3.8
|
38.2
|
1.0
|
CD
|
D:PRO166
|
3.9
|
30.8
|
1.0
|
HA
|
D:HIS481
|
3.9
|
42.6
|
1.0
|
HE2
|
D:HIS47
|
4.0
|
43.1
|
1.0
|
CA
|
D:PHE165
|
4.0
|
31.3
|
1.0
|
HB3
|
D:PHE165
|
4.0
|
31.3
|
1.0
|
N
|
D:PRO166
|
4.0
|
30.8
|
1.0
|
CB
|
D:HIS481
|
4.0
|
42.6
|
1.0
|
NE2
|
D:HIS47
|
4.1
|
43.1
|
1.0
|
HB2
|
D:HIS303
|
4.1
|
38.2
|
1.0
|
CA
|
D:SER167
|
4.1
|
27.7
|
1.0
|
HB2
|
D:SER167
|
4.2
|
27.7
|
1.0
|
C
|
D:PHE165
|
4.2
|
31.3
|
1.0
|
HD3
|
D:PRO166
|
4.3
|
30.8
|
1.0
|
CD1
|
D:PHE165
|
4.3
|
31.3
|
1.0
|
HE2
|
D:MET175
|
4.4
|
36.0
|
1.0
|
ND1
|
D:HIS47
|
4.5
|
43.1
|
1.0
|
CB
|
D:PHE165
|
4.5
|
31.3
|
1.0
|
CA
|
D:HIS481
|
4.5
|
42.6
|
1.0
|
HE1
|
D:HIS303
|
4.5
|
38.2
|
1.0
|
CE1
|
D:HIS303
|
4.6
|
38.2
|
1.0
|
HA
|
D:SER167
|
4.7
|
27.7
|
1.0
|
CG
|
D:HIS303
|
4.7
|
38.2
|
1.0
|
C
|
D:PRO166
|
4.7
|
30.8
|
1.0
|
HA
|
D:HIS303
|
4.7
|
38.2
|
1.0
|
NE2
|
D:HIS481
|
4.8
|
42.6
|
1.0
|
CB
|
D:HIS303
|
4.8
|
38.2
|
1.0
|
O
|
D:VAL164
|
4.8
|
33.5
|
1.0
|
HB2
|
D:PRO166
|
4.9
|
30.8
|
1.0
|
CD2
|
D:HIS481
|
4.9
|
42.6
|
1.0
|
CA
|
D:PRO166
|
4.9
|
30.8
|
1.0
|
CG
|
D:PHE165
|
4.9
|
31.3
|
1.0
|
HB3
|
D:HIS481
|
4.9
|
42.6
|
1.0
|
O
|
D:PHE165
|
4.9
|
31.3
|
1.0
|
CG
|
D:PRO166
|
5.0
|
30.8
|
1.0
|
|
Copper binding site 8 out
of 12 in 8cad
Go back to
Copper Binding Sites List in 8cad
Copper binding site 8 out
of 12 in the Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 8 of Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu901
b:56.6
occ:1.00
|
HD1
|
D:HIS314
|
1.7
|
23.7
|
1.0
|
OE2
|
D:GLU291
|
2.2
|
22.2
|
1.0
|
ND1
|
D:HIS314
|
2.4
|
23.7
|
1.0
|
ND1
|
B:HIS319
|
2.8
|
25.4
|
1.0
|
HB3
|
D:HIS314
|
2.8
|
23.7
|
1.0
|
CD
|
D:GLU291
|
3.1
|
22.2
|
1.0
|
CG
|
D:HIS314
|
3.3
|
23.7
|
1.0
|
CE1
|
D:HIS314
|
3.3
|
23.7
|
1.0
|
OE1
|
D:GLU291
|
3.4
|
22.2
|
1.0
|
HB3
|
B:HIS319
|
3.4
|
25.4
|
1.0
|
CE1
|
B:HIS319
|
3.4
|
25.4
|
1.0
|
CB
|
D:HIS314
|
3.5
|
23.7
|
1.0
|
HE1
|
B:HIS319
|
3.5
|
25.4
|
1.0
|
HE1
|
D:HIS314
|
3.5
|
23.7
|
1.0
|
CG
|
B:HIS319
|
3.6
|
25.4
|
1.0
|
CB
|
B:HIS319
|
4.0
|
25.4
|
1.0
|
HB2
|
D:HIS314
|
4.2
|
23.7
|
1.0
|
HA
|
D:HIS314
|
4.2
|
23.7
|
1.0
|
O
|
D:HOH1045
|
4.3
|
17.9
|
1.0
|
HG2
|
D:GLU293
|
4.4
|
23.4
|
1.0
|
CD2
|
D:HIS314
|
4.4
|
23.7
|
1.0
|
NE2
|
D:HIS314
|
4.4
|
23.7
|
1.0
|
HB2
|
B:HIS319
|
4.4
|
25.4
|
1.0
|
NE2
|
B:HIS319
|
4.4
|
25.4
|
1.0
|
CA
|
D:HIS314
|
4.5
|
23.7
|
1.0
|
CG
|
D:GLU291
|
4.5
|
22.2
|
1.0
|
CD2
|
B:HIS319
|
4.5
|
25.4
|
1.0
|
H
|
B:GLN320
|
4.6
|
26.8
|
1.0
|
HG2
|
D:GLU291
|
4.6
|
22.2
|
1.0
|
O
|
A:HOH1045
|
4.8
|
19.6
|
1.0
|
HG3
|
D:GLU291
|
4.8
|
22.2
|
1.0
|
|
Copper binding site 9 out
of 12 in 8cad
Go back to
Copper Binding Sites List in 8cad
Copper binding site 9 out
of 12 in the Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 9 of Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cu900
b:58.4
occ:1.00
|
HE1
|
E:HIS47
|
2.7
|
42.9
|
1.0
|
ND1
|
E:HIS481
|
2.8
|
41.9
|
1.0
|
HB3
|
E:SER167
|
2.8
|
28.5
|
1.0
|
H
|
E:SER167
|
2.9
|
28.5
|
1.0
|
HG
|
E:SER167
|
3.0
|
28.5
|
1.0
|
OG
|
E:SER167
|
3.0
|
28.5
|
1.0
|
HD2
|
E:PRO166
|
3.1
|
30.8
|
1.0
|
HA
|
E:PHE165
|
3.2
|
31.1
|
1.0
|
CB
|
E:SER167
|
3.4
|
28.5
|
1.0
|
HD1
|
E:PHE165
|
3.4
|
31.1
|
1.0
|
CE1
|
E:HIS47
|
3.4
|
42.9
|
1.0
|
HB2
|
E:HIS481
|
3.5
|
41.9
|
1.0
|
CE1
|
E:HIS481
|
3.6
|
41.9
|
1.0
|
HE1
|
E:HIS481
|
3.6
|
41.9
|
1.0
|
N
|
E:SER167
|
3.6
|
28.5
|
1.0
|
CG
|
E:HIS481
|
3.8
|
41.9
|
1.0
|
ND1
|
E:HIS303
|
3.8
|
38.4
|
1.0
|
CD
|
E:PRO166
|
3.9
|
30.8
|
1.0
|
HA
|
E:HIS481
|
3.9
|
41.9
|
1.0
|
HE2
|
E:HIS47
|
4.0
|
42.9
|
1.0
|
CA
|
E:PHE165
|
4.0
|
31.1
|
1.0
|
HB3
|
E:PHE165
|
4.0
|
31.1
|
1.0
|
N
|
E:PRO166
|
4.0
|
30.8
|
1.0
|
CB
|
E:HIS481
|
4.0
|
41.9
|
1.0
|
NE2
|
E:HIS47
|
4.1
|
42.9
|
1.0
|
HB2
|
E:HIS303
|
4.1
|
38.4
|
1.0
|
CA
|
E:SER167
|
4.1
|
28.5
|
1.0
|
HB2
|
E:SER167
|
4.2
|
28.5
|
1.0
|
C
|
E:PHE165
|
4.2
|
31.1
|
1.0
|
HD3
|
E:PRO166
|
4.3
|
30.8
|
1.0
|
CD1
|
E:PHE165
|
4.3
|
31.1
|
1.0
|
HE2
|
E:MET175
|
4.4
|
35.7
|
1.0
|
ND1
|
E:HIS47
|
4.4
|
42.9
|
1.0
|
CB
|
E:PHE165
|
4.5
|
31.1
|
1.0
|
CA
|
E:HIS481
|
4.5
|
41.9
|
1.0
|
HE1
|
E:HIS303
|
4.5
|
38.4
|
1.0
|
CE1
|
E:HIS303
|
4.6
|
38.4
|
1.0
|
HA
|
E:SER167
|
4.7
|
28.5
|
1.0
|
CG
|
E:HIS303
|
4.7
|
38.4
|
1.0
|
C
|
E:PRO166
|
4.7
|
30.8
|
1.0
|
HA
|
E:HIS303
|
4.7
|
38.4
|
1.0
|
NE2
|
E:HIS481
|
4.8
|
41.9
|
1.0
|
CB
|
E:HIS303
|
4.8
|
38.4
|
1.0
|
O
|
E:VAL164
|
4.8
|
33.0
|
1.0
|
HB2
|
E:PRO166
|
4.9
|
30.8
|
1.0
|
CD2
|
E:HIS481
|
4.9
|
41.9
|
1.0
|
CA
|
E:PRO166
|
4.9
|
30.8
|
1.0
|
CG
|
E:PHE165
|
4.9
|
31.1
|
1.0
|
HB3
|
E:HIS481
|
4.9
|
41.9
|
1.0
|
O
|
E:PHE165
|
4.9
|
31.1
|
1.0
|
CG
|
E:PRO166
|
5.0
|
30.8
|
1.0
|
|
Copper binding site 10 out
of 12 in 8cad
Go back to
Copper Binding Sites List in 8cad
Copper binding site 10 out
of 12 in the Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 10 of Cryo-Em Structure of the Ceres Homohexamer From Galleria Mellonella Saliva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cu901
b:61.8
occ:1.00
|
HD1
|
E:HIS314
|
1.7
|
22.9
|
1.0
|
OE2
|
E:GLU291
|
2.2
|
22.4
|
1.0
|
ND1
|
E:HIS314
|
2.4
|
22.9
|
1.0
|
ND1
|
A:HIS319
|
2.8
|
25.9
|
1.0
|
HB3
|
E:HIS314
|
2.8
|
22.9
|
1.0
|
CD
|
E:GLU291
|
3.1
|
22.4
|
1.0
|
CG
|
E:HIS314
|
3.3
|
22.9
|
1.0
|
CE1
|
E:HIS314
|
3.3
|
22.9
|
1.0
|
OE1
|
E:GLU291
|
3.4
|
22.4
|
1.0
|
HB3
|
A:HIS319
|
3.4
|
25.9
|
1.0
|
CE1
|
A:HIS319
|
3.4
|
25.9
|
1.0
|
CB
|
E:HIS314
|
3.5
|
22.9
|
1.0
|
HE1
|
A:HIS319
|
3.5
|
25.9
|
1.0
|
HE1
|
E:HIS314
|
3.5
|
22.9
|
1.0
|
CG
|
A:HIS319
|
3.6
|
25.9
|
1.0
|
CB
|
A:HIS319
|
4.0
|
25.9
|
1.0
|
HB2
|
E:HIS314
|
4.2
|
22.9
|
1.0
|
HA
|
E:HIS314
|
4.2
|
22.9
|
1.0
|
O
|
E:HOH1053
|
4.3
|
19.9
|
1.0
|
HG2
|
E:GLU293
|
4.4
|
23.1
|
1.0
|
CD2
|
E:HIS314
|
4.4
|
22.9
|
1.0
|
NE2
|
E:HIS314
|
4.4
|
22.9
|
1.0
|
HB2
|
A:HIS319
|
4.4
|
25.9
|
1.0
|
NE2
|
A:HIS319
|
4.4
|
25.9
|
1.0
|
CA
|
E:HIS314
|
4.5
|
22.9
|
1.0
|
CG
|
E:GLU291
|
4.5
|
22.4
|
1.0
|
CD2
|
A:HIS319
|
4.5
|
25.9
|
1.0
|
H
|
A:GLN320
|
4.6
|
27.8
|
1.0
|
HG2
|
E:GLU291
|
4.6
|
22.4
|
1.0
|
O
|
C:HOH1053
|
4.7
|
20.8
|
1.0
|
HG3
|
E:GLU291
|
4.8
|
22.4
|
1.0
|
|
Reference:
M.Spinola-Amilibia,
R.Illanes-Vicioso,
E.Ruiz-L Formula See Text Pez,
P.Colomer-Vidal,
F.V.Rodriguez,
R.Peces Perez,
C.F.Arias,
T.Torroba,
M.Sol Formula See Text,
E.Arias-Palomo,
F.Bertocchini.
Plastic Degradation By Insect Hexamerins: Near-Atomic Resolution Structures of the Polyethylene-Degrading Proteins From the Wax Worm Saliva. Sci Adv V. 9 I6813 2023.
ISSN: ESSN 2375-2548
PubMed: 37729416
DOI: 10.1126/SCIADV.ADI6813
Page generated: Wed Jul 31 09:33:30 2024
|