Copper in PDB 8ca9: Cryo-Em Structure of the Cibeles-Demetra 3:3 Heterocomplex From Galleria Mellonella Saliva

The binding sites of Copper atom in the Cryo-Em Structure of the Cibeles-Demetra 3:3 Heterocomplex From Galleria Mellonella Saliva (pdb code 8ca9). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Cryo-Em Structure of the Cibeles-Demetra 3:3 Heterocomplex From Galleria Mellonella Saliva, PDB code: 8ca9:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in the Cryo-Em Structure of the Cibeles-Demetra 3:3 Heterocomplex From Galleria Mellonella Saliva


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cryo-Em Structure of the Cibeles-Demetra 3:3 Heterocomplex From Galleria Mellonella Saliva within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu900 b:37.4 occ:1.00 O A:GLN299 2.2 19.1 1.0 O A:HOH1061 2.3 21.4 1.0 O A:HOH1194 2.5 19.4 1.0 OD2 A:ASP318 2.7 18.1 1.0 OE2 A:GLU219 2.8 17.9 1.0 OD1 A:ASP318 2.9 18.1 1.0 O A:HOH1114 2.9 25.3 1.0 CG A:ASP318 3.0 18.1 1.0 OE1 A:GLU219 3.1 17.9 1.0 CD A:GLU219 3.2 17.9 1.0 C A:GLN299 3.3 19.1 1.0 HB3 A:GLN299 3.5 19.1 1.0 O A:HOH1060 3.9 22.1 1.0 HA A:GLN299 3.9 19.1 1.0 HA A:THR300 3.9 16.5 1.0 CA A:GLN299 4.0 19.1 1.0 OD2 A:ASP220 4.1 20.3 1.0 CB A:GLN299 4.2 19.1 1.0 H A:SER301 4.4 15.2 1.0 N A:THR300 4.4 16.5 1.0 O A:HOH1001 4.4 22.3 1.0 CB A:ASP318 4.4 18.1 1.0 HB2 A:GLN299 4.4 19.1 1.0 HB2 A:ASP318 4.5 18.1 1.0 CA A:THR300 4.6 16.5 1.0 O A:HOH1004 4.6 22.8 1.0 CG A:GLU219 4.6 17.9 1.0 HG3 A:GLU219 4.7 17.9 1.0 OD1 A:ASP220 4.7 20.3 1.0 O A:HOH1115 4.7 26.1 1.0 CG A:ASP220 4.8 20.3 1.0 H A:ASP319 4.8 19.3 1.0 OD1 A:ASP319 4.8 19.3 1.0 HA A:ASP318 4.9 18.1 1.0 N A:SER301 4.9 15.2 1.0 HB3 A:ASP318 5.0 18.1 1.0

Copper binding site 2 out of 3 in the Cryo-Em Structure of the Cibeles-Demetra 3:3 Heterocomplex From Galleria Mellonella Saliva


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cryo-Em Structure of the Cibeles-Demetra 3:3 Heterocomplex From Galleria Mellonella Saliva within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu900 b:34.6 occ:1.00 O B:GLN299 2.2 19.0 1.0 O B:HOH1059 2.3 20.7 1.0 O B:HOH1216 2.5 20.8 1.0 OD2 B:ASP318 2.7 18.1 1.0 OE2 B:GLU219 2.8 18.0 1.0 OD1 B:ASP318 2.9 18.1 1.0 O B:HOH1148 2.9 26.8 1.0 CG B:ASP318 3.0 18.1 1.0 OE1 B:GLU219 3.1 18.0 1.0 CD B:GLU219 3.2 18.0 1.0 C B:GLN299 3.3 19.0 1.0 HB3 B:GLN299 3.5 19.0 1.0 O B:HOH1056 3.9 22.5 1.0 HA B:GLN299 3.9 19.0 1.0 HA B:THR300 3.9 16.1 1.0 CA B:GLN299 4.0 19.0 1.0 OD2 B:ASP220 4.1 19.5 1.0 CB B:GLN299 4.2 19.0 1.0 H B:SER301 4.4 15.2 1.0 N B:THR300 4.4 16.1 1.0 CB B:ASP318 4.4 18.1 1.0 O B:HOH1001 4.4 20.8 1.0 HB2 B:GLN299 4.4 19.0 1.0 HB2 B:ASP318 4.5 18.1 1.0 CA B:THR300 4.6 16.1 1.0 CG B:GLU219 4.6 18.0 1.0 HG3 B:GLU219 4.7 18.0 1.0 OD1 B:ASP220 4.7 19.5 1.0 O B:HOH1006 4.8 21.5 1.0 CG B:ASP220 4.8 19.5 1.0 H B:ASP319 4.8 19.2 1.0 OD1 B:ASP319 4.8 19.2 1.0 HA B:ASP318 4.9 18.1 1.0 O B:HOH1125 4.9 24.3 1.0 N B:SER301 4.9 15.2 1.0 HB3 B:ASP318 5.0 18.1 1.0

Copper binding site 3 out of 3 in the Cryo-Em Structure of the Cibeles-Demetra 3:3 Heterocomplex From Galleria Mellonella Saliva


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cryo-Em Structure of the Cibeles-Demetra 3:3 Heterocomplex From Galleria Mellonella Saliva within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu900 b:35.5 occ:1.00 O C:GLN299 2.2 18.3 1.0 O C:HOH1058 2.3 21.7 1.0 O C:HOH1188 2.5 20.1 1.0 OD2 C:ASP318 2.7 17.4 1.0 OE2 C:GLU219 2.8 17.8 1.0 OD1 C:ASP318 2.9 17.4 1.0 O C:HOH1117 2.9 21.9 1.0 CG C:ASP318 3.0 17.4 1.0 OE1 C:GLU219 3.1 17.8 1.0 CD C:GLU219 3.2 17.8 1.0 C C:GLN299 3.3 18.3 1.0 HB3 C:GLN299 3.5 18.3 1.0 O C:HOH1063 3.8 20.2 1.0 HA C:GLN299 3.9 18.3 1.0 O C:HOH1143 3.9 24.7 1.0 HA C:THR300 3.9 15.9 1.0 CA C:GLN299 4.0 18.3 1.0 OD2 C:ASP220 4.1 19.6 1.0 CB C:GLN299 4.2 18.3 1.0 H C:SER301 4.4 14.9 1.0 N C:THR300 4.4 15.9 1.0 CB C:ASP318 4.4 17.4 1.0 HB2 C:GLN299 4.4 18.3 1.0 HB2 C:ASP318 4.5 17.4 1.0 O C:HOH1002 4.5 24.1 1.0 CA C:THR300 4.6 15.9 1.0 CG C:GLU219 4.6 17.8 1.0 HG3 C:GLU219 4.7 17.8 1.0 OD1 C:ASP220 4.7 19.6 1.0 CG C:ASP220 4.8 19.6 1.0 H C:ASP319 4.8 18.2 1.0 OD1 C:ASP319 4.8 18.2 1.0 HA C:ASP318 4.9 17.4 1.0 N C:SER301 4.9 14.9 1.0 HB3 C:ASP318 5.0 17.4 1.0

M.Spinola-Amilibia, R.Illanes-Vicioso, E.Ruiz-L Formula See Text Pez, P.Colomer-Vidal, F.V.Rodriguez, R.Peces Perez, C.F.Arias, T.Torroba, M.Sol Formula See Text, E.Arias-Palomo, F.Bertocchini. Plastic Degradation By Insect Hexamerins: Near-Atomic Resolution Structures of the Polyethylene-Degrading Proteins From the Wax Worm Saliva. Sci Adv V. 9 I6813 2023.
ISSN: ESSN 2375-2548
PubMed: 37729416
DOI: 10.1126/SCIADV.ADI6813